Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02876

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02874 and MPMX26_02875 are separated by 20 nucleotidesMPMX26_02875 and MPMX26_02876 are separated by 32 nucleotidesMPMX26_02876 and MPMX26_02877 are separated by 436 nucleotides MPMX26_02874: MPMX26_02874 - hypothetical protein, at 2,971,334 to 2,972,365 _02874 MPMX26_02875: MPMX26_02875 - hypothetical protein, at 2,972,386 to 2,972,736 _02875 MPMX26_02876: MPMX26_02876 - hypothetical protein, at 2,972,769 to 2,973,638 _02876 MPMX26_02877: MPMX26_02877 - hypothetical protein, at 2,974,075 to 2,976,522 _02877 Position (kb) 2972 2973 2974Strain fitness (log2 ratio) -1 0 1at 2971.813 kb on - strand, within MPMX26_02874at 2971.838 kb on - strand, within MPMX26_02874at 2971.846 kb on - strand, within MPMX26_02874at 2971.887 kb on + strand, within MPMX26_02874at 2971.887 kb on - strand, within MPMX26_02874at 2971.939 kb on - strand, within MPMX26_02874at 2971.987 kb on - strand, within MPMX26_02874at 2972.137 kb on - strand, within MPMX26_02874at 2972.307 kb on - strandat 2972.555 kb on - strand, within MPMX26_02875at 2972.583 kb on - strand, within MPMX26_02875at 2972.698 kb on - strand, within MPMX26_02875at 2972.715 kb on - strandat 2972.792 kb on - strandat 2972.842 kb on - strandat 2972.859 kb on - strand, within MPMX26_02876at 2972.947 kb on - strand, within MPMX26_02876at 2973.157 kb on - strand, within MPMX26_02876at 2973.282 kb on + strand, within MPMX26_02876at 2973.502 kb on - strand, within MPMX26_02876at 2973.564 kb on - strandat 2974.083 kb on - strandat 2974.089 kb on - strandat 2974.089 kb on - strandat 2974.089 kb on - strandat 2974.122 kb on - strandat 2974.122 kb on - strandat 2974.122 kb on - strandat 2974.122 kb on - strandat 2974.201 kb on - strandat 2974.201 kb on - strandat 2974.209 kb on - strandat 2974.280 kb on + strandat 2974.307 kb on - strandat 2974.332 kb on + strand, within MPMX26_02877at 2974.337 kb on + strand, within MPMX26_02877at 2974.337 kb on + strand, within MPMX26_02877at 2974.337 kb on + strand, within MPMX26_02877at 2974.345 kb on - strand, within MPMX26_02877at 2974.345 kb on - strand, within MPMX26_02877at 2974.345 kb on - strand, within MPMX26_02877at 2974.345 kb on - strand, within MPMX26_02877at 2974.345 kb on - strand, within MPMX26_02877at 2974.345 kb on - strand, within MPMX26_02877at 2974.345 kb on - strand, within MPMX26_02877at 2974.345 kb on - strand, within MPMX26_02877at 2974.489 kb on - strand, within MPMX26_02877at 2974.489 kb on - strand, within MPMX26_02877at 2974.489 kb on - strand, within MPMX26_02877at 2974.489 kb on - strand, within MPMX26_02877at 2974.489 kb on - strand, within MPMX26_02877at 2974.489 kb on - strand, within MPMX26_02877at 2974.492 kb on - strand, within MPMX26_02877at 2974.492 kb on - strand, within MPMX26_02877at 2974.492 kb on - strand, within MPMX26_02877at 2974.492 kb on - strand, within MPMX26_02877at 2974.492 kb on - strand, within MPMX26_02877at 2974.549 kb on - strand, within MPMX26_02877at 2974.588 kb on - strand, within MPMX26_02877at 2974.589 kb on - strand, within MPMX26_02877at 2974.589 kb on - strand, within MPMX26_02877at 2974.589 kb on - strand, within MPMX26_02877at 2974.589 kb on - strand, within MPMX26_02877at 2974.598 kb on - strand, within MPMX26_02877at 2974.638 kb on - strand, within MPMX26_02877

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,971,813 - MPMX26_02874 0.46 +0.0
2,971,838 - MPMX26_02874 0.49 -1.0
2,971,846 - MPMX26_02874 0.50 -0.4
2,971,887 + MPMX26_02874 0.54 -0.4
2,971,887 - MPMX26_02874 0.54 +0.5
2,971,939 - MPMX26_02874 0.59 +1.4
2,971,987 - MPMX26_02874 0.63 +0.0
2,972,137 - MPMX26_02874 0.78 -0.2
2,972,307 - +1.0
2,972,555 - MPMX26_02875 0.48 -0.2
2,972,583 - MPMX26_02875 0.56 -0.7
2,972,698 - MPMX26_02875 0.89 -0.4
2,972,715 - -0.5
2,972,792 - +0.2
2,972,842 - +0.6
2,972,859 - MPMX26_02876 0.10 -0.5
2,972,947 - MPMX26_02876 0.20 -0.9
2,973,157 - MPMX26_02876 0.45 -0.6
2,973,282 + MPMX26_02876 0.59 -1.5
2,973,502 - MPMX26_02876 0.84 -0.5
2,973,564 - +0.2
2,974,083 - -0.8
2,974,089 - +0.0
2,974,089 - -0.3
2,974,089 - -0.4
2,974,122 - -0.5
2,974,122 - +0.1
2,974,122 - -0.4
2,974,122 - -0.3
2,974,201 - -0.3
2,974,201 - +0.0
2,974,209 - -0.2
2,974,280 + +0.2
2,974,307 - +1.4
2,974,332 + MPMX26_02877 0.10 +0.2
2,974,337 + MPMX26_02877 0.11 -0.1
2,974,337 + MPMX26_02877 0.11 +0.1
2,974,337 + MPMX26_02877 0.11 +0.0
2,974,345 - MPMX26_02877 0.11 +0.4
2,974,345 - MPMX26_02877 0.11 +0.5
2,974,345 - MPMX26_02877 0.11 +0.0
2,974,345 - MPMX26_02877 0.11 +0.1
2,974,345 - MPMX26_02877 0.11 -0.7
2,974,345 - MPMX26_02877 0.11 -0.1
2,974,345 - MPMX26_02877 0.11 +0.4
2,974,345 - MPMX26_02877 0.11 +0.2
2,974,489 - MPMX26_02877 0.17 -0.2
2,974,489 - MPMX26_02877 0.17 +0.5
2,974,489 - MPMX26_02877 0.17 +0.2
2,974,489 - MPMX26_02877 0.17 +0.3
2,974,489 - MPMX26_02877 0.17 -0.0
2,974,489 - MPMX26_02877 0.17 +0.2
2,974,492 - MPMX26_02877 0.17 +0.6
2,974,492 - MPMX26_02877 0.17 +0.1
2,974,492 - MPMX26_02877 0.17 +0.3
2,974,492 - MPMX26_02877 0.17 -0.7
2,974,492 - MPMX26_02877 0.17 +0.1
2,974,549 - MPMX26_02877 0.19 +0.3
2,974,588 - MPMX26_02877 0.21 -0.2
2,974,589 - MPMX26_02877 0.21 +0.7
2,974,589 - MPMX26_02877 0.21 -0.1
2,974,589 - MPMX26_02877 0.21 -1.2
2,974,589 - MPMX26_02877 0.21 +0.8
2,974,598 - MPMX26_02877 0.21 +0.4
2,974,638 - MPMX26_02877 0.23 -0.1

Or see this region's nucleotide sequence