Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02748

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02746 and MPMX26_02747 are separated by 339 nucleotidesMPMX26_02747 and MPMX26_02748 are separated by 123 nucleotidesMPMX26_02748 and MPMX26_02749 are separated by 53 nucleotides MPMX26_02746: MPMX26_02746 - Oxygen-dependent coproporphyrinogen-III oxidase, at 2,829,382 to 2,830,323 _02746 MPMX26_02747: MPMX26_02747 - hypothetical protein, at 2,830,663 to 2,830,869 _02747 MPMX26_02748: MPMX26_02748 - Shikimate dehydrogenase (NADP(+)), at 2,830,993 to 2,831,784 _02748 MPMX26_02749: MPMX26_02749 - hypothetical protein, at 2,831,838 to 2,834,228 _02749 Position (kb) 2830 2831 2832Strain fitness (log2 ratio) -3 -2 -1 0 1at 2830.550 kb on + strandat 2830.550 kb on + strandat 2830.550 kb on + strandat 2830.568 kb on + strandat 2830.703 kb on + strand, within MPMX26_02747at 2830.776 kb on + strand, within MPMX26_02747at 2830.776 kb on + strand, within MPMX26_02747at 2830.778 kb on + strand, within MPMX26_02747at 2830.802 kb on + strand, within MPMX26_02747at 2830.802 kb on + strand, within MPMX26_02747at 2830.812 kb on + strand, within MPMX26_02747at 2830.824 kb on + strand, within MPMX26_02747at 2830.833 kb on + strand, within MPMX26_02747at 2830.873 kb on + strandat 2830.953 kb on + strandat 2830.955 kb on + strandat 2830.996 kb on + strandat 2831.034 kb on + strandat 2831.034 kb on + strandat 2831.042 kb on + strandat 2831.042 kb on + strandat 2831.042 kb on + strandat 2831.042 kb on + strandat 2831.164 kb on + strand, within MPMX26_02748at 2831.165 kb on + strand, within MPMX26_02748at 2831.220 kb on + strand, within MPMX26_02748at 2831.254 kb on + strand, within MPMX26_02748at 2831.299 kb on + strand, within MPMX26_02748at 2831.326 kb on + strand, within MPMX26_02748at 2831.326 kb on + strand, within MPMX26_02748at 2831.390 kb on + strand, within MPMX26_02748at 2831.390 kb on + strand, within MPMX26_02748at 2831.392 kb on + strand, within MPMX26_02748at 2831.394 kb on + strand, within MPMX26_02748at 2831.401 kb on + strand, within MPMX26_02748at 2831.406 kb on + strand, within MPMX26_02748at 2831.406 kb on + strand, within MPMX26_02748at 2831.456 kb on + strand, within MPMX26_02748at 2831.456 kb on + strand, within MPMX26_02748at 2831.469 kb on + strand, within MPMX26_02748at 2831.469 kb on + strand, within MPMX26_02748at 2831.489 kb on + strand, within MPMX26_02748at 2831.553 kb on + strand, within MPMX26_02748at 2831.623 kb on + strand, within MPMX26_02748at 2831.647 kb on + strand, within MPMX26_02748at 2831.647 kb on + strand, within MPMX26_02748at 2831.667 kb on + strand, within MPMX26_02748at 2831.668 kb on + strand, within MPMX26_02748at 2831.681 kb on + strand, within MPMX26_02748at 2831.681 kb on + strand, within MPMX26_02748at 2831.681 kb on + strand, within MPMX26_02748at 2831.681 kb on + strand, within MPMX26_02748at 2831.698 kb on + strand, within MPMX26_02748at 2831.698 kb on + strand, within MPMX26_02748at 2831.750 kb on + strandat 2831.750 kb on + strandat 2831.750 kb on + strandat 2831.756 kb on + strandat 2831.848 kb on - strandat 2831.914 kb on - strandat 2831.914 kb on - strandat 2831.914 kb on - strandat 2831.929 kb on - strandat 2831.954 kb on - strandat 2831.954 kb on - strandat 2831.954 kb on - strandat 2831.959 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.981 kb on - strandat 2831.986 kb on - strandat 2831.986 kb on - strandat 2832.057 kb on - strandat 2832.078 kb on - strand, within MPMX26_02749at 2832.078 kb on - strand, within MPMX26_02749at 2832.078 kb on - strand, within MPMX26_02749at 2832.078 kb on - strand, within MPMX26_02749at 2832.125 kb on - strand, within MPMX26_02749at 2832.125 kb on - strand, within MPMX26_02749at 2832.125 kb on - strand, within MPMX26_02749at 2832.135 kb on - strand, within MPMX26_02749at 2832.135 kb on - strand, within MPMX26_02749at 2832.173 kb on - strand, within MPMX26_02749at 2832.258 kb on - strand, within MPMX26_02749at 2832.263 kb on - strand, within MPMX26_02749at 2832.263 kb on - strand, within MPMX26_02749at 2832.291 kb on - strand, within MPMX26_02749at 2832.327 kb on - strand, within MPMX26_02749at 2832.327 kb on - strand, within MPMX26_02749at 2832.327 kb on - strand, within MPMX26_02749at 2832.350 kb on - strand, within MPMX26_02749at 2832.402 kb on - strand, within MPMX26_02749at 2832.402 kb on - strand, within MPMX26_02749at 2832.402 kb on - strand, within MPMX26_02749at 2832.404 kb on - strand, within MPMX26_02749at 2832.404 kb on - strand, within MPMX26_02749at 2832.434 kb on - strand, within MPMX26_02749at 2832.512 kb on - strand, within MPMX26_02749at 2832.539 kb on - strand, within MPMX26_02749at 2832.559 kb on - strand, within MPMX26_02749at 2832.666 kb on - strand, within MPMX26_02749at 2832.669 kb on - strand, within MPMX26_02749at 2832.673 kb on - strand, within MPMX26_02749at 2832.674 kb on - strand, within MPMX26_02749at 2832.694 kb on - strand, within MPMX26_02749at 2832.694 kb on - strand, within MPMX26_02749at 2832.694 kb on - strand, within MPMX26_02749at 2832.694 kb on - strand, within MPMX26_02749at 2832.694 kb on - strand, within MPMX26_02749at 2832.699 kb on - strand, within MPMX26_02749at 2832.699 kb on - strand, within MPMX26_02749at 2832.699 kb on - strand, within MPMX26_02749at 2832.699 kb on - strand, within MPMX26_02749at 2832.707 kb on - strand, within MPMX26_02749at 2832.713 kb on - strand, within MPMX26_02749at 2832.731 kb on - strand, within MPMX26_02749at 2832.731 kb on - strand, within MPMX26_02749at 2832.731 kb on - strand, within MPMX26_02749at 2832.770 kb on - strand, within MPMX26_02749

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,830,550 + +0.4
2,830,550 + +0.8
2,830,550 + -0.4
2,830,568 + -1.6
2,830,703 + MPMX26_02747 0.19 +0.1
2,830,776 + MPMX26_02747 0.55 -0.3
2,830,776 + MPMX26_02747 0.55 -0.5
2,830,778 + MPMX26_02747 0.56 +0.8
2,830,802 + MPMX26_02747 0.67 +0.4
2,830,802 + MPMX26_02747 0.67 +0.5
2,830,812 + MPMX26_02747 0.72 -0.4
2,830,824 + MPMX26_02747 0.78 +0.4
2,830,833 + MPMX26_02747 0.82 +0.4
2,830,873 + +0.1
2,830,953 + +0.7
2,830,955 + -0.2
2,830,996 + -1.9
2,831,034 + -1.2
2,831,034 + -0.7
2,831,042 + -0.7
2,831,042 + -0.1
2,831,042 + -1.7
2,831,042 + +0.0
2,831,164 + MPMX26_02748 0.22 -1.9
2,831,165 + MPMX26_02748 0.22 -0.7
2,831,220 + MPMX26_02748 0.29 +0.9
2,831,254 + MPMX26_02748 0.33 -2.2
2,831,299 + MPMX26_02748 0.39 -0.6
2,831,326 + MPMX26_02748 0.42 -1.0
2,831,326 + MPMX26_02748 0.42 -1.0
2,831,390 + MPMX26_02748 0.50 -1.8
2,831,390 + MPMX26_02748 0.50 -0.4
2,831,392 + MPMX26_02748 0.50 +0.4
2,831,394 + MPMX26_02748 0.51 -2.0
2,831,401 + MPMX26_02748 0.52 -0.7
2,831,406 + MPMX26_02748 0.52 -3.2
2,831,406 + MPMX26_02748 0.52 -2.1
2,831,456 + MPMX26_02748 0.58 -1.6
2,831,456 + MPMX26_02748 0.58 -0.3
2,831,469 + MPMX26_02748 0.60 -2.6
2,831,469 + MPMX26_02748 0.60 +0.3
2,831,489 + MPMX26_02748 0.63 -2.4
2,831,553 + MPMX26_02748 0.71 -1.6
2,831,623 + MPMX26_02748 0.80 -1.8
2,831,647 + MPMX26_02748 0.83 -1.4
2,831,647 + MPMX26_02748 0.83 -0.7
2,831,667 + MPMX26_02748 0.85 -1.0
2,831,668 + MPMX26_02748 0.85 +0.3
2,831,681 + MPMX26_02748 0.87 -0.2
2,831,681 + MPMX26_02748 0.87 -0.4
2,831,681 + MPMX26_02748 0.87 -0.6
2,831,681 + MPMX26_02748 0.87 -0.5
2,831,698 + MPMX26_02748 0.89 -0.4
2,831,698 + MPMX26_02748 0.89 -1.0
2,831,750 + +1.1
2,831,750 + +0.1
2,831,750 + -0.3
2,831,756 + -0.1
2,831,848 - -0.0
2,831,914 - -0.0
2,831,914 - -0.2
2,831,914 - -0.3
2,831,929 - -1.5
2,831,954 - +0.3
2,831,954 - +0.3
2,831,954 - +0.7
2,831,959 - +0.2
2,831,981 - -0.1
2,831,981 - +0.1
2,831,981 - -0.6
2,831,981 - -0.1
2,831,981 - -0.6
2,831,981 - +0.0
2,831,981 - -0.0
2,831,981 - +0.0
2,831,981 - -0.3
2,831,981 - -0.4
2,831,981 - -0.5
2,831,986 - -0.4
2,831,986 - +0.9
2,832,057 - -0.0
2,832,078 - MPMX26_02749 0.10 +0.5
2,832,078 - MPMX26_02749 0.10 +0.3
2,832,078 - MPMX26_02749 0.10 -0.8
2,832,078 - MPMX26_02749 0.10 +0.1
2,832,125 - MPMX26_02749 0.12 +1.2
2,832,125 - MPMX26_02749 0.12 +0.0
2,832,125 - MPMX26_02749 0.12 +0.4
2,832,135 - MPMX26_02749 0.12 -0.1
2,832,135 - MPMX26_02749 0.12 +0.1
2,832,173 - MPMX26_02749 0.14 +0.0
2,832,258 - MPMX26_02749 0.18 -0.2
2,832,263 - MPMX26_02749 0.18 -0.5
2,832,263 - MPMX26_02749 0.18 -1.3
2,832,291 - MPMX26_02749 0.19 -0.7
2,832,327 - MPMX26_02749 0.20 -0.1
2,832,327 - MPMX26_02749 0.20 +0.0
2,832,327 - MPMX26_02749 0.20 -0.6
2,832,350 - MPMX26_02749 0.21 +0.1
2,832,402 - MPMX26_02749 0.24 -1.4
2,832,402 - MPMX26_02749 0.24 +0.5
2,832,402 - MPMX26_02749 0.24 -0.2
2,832,404 - MPMX26_02749 0.24 -0.5
2,832,404 - MPMX26_02749 0.24 +0.8
2,832,434 - MPMX26_02749 0.25 +0.3
2,832,512 - MPMX26_02749 0.28 -0.5
2,832,539 - MPMX26_02749 0.29 -0.1
2,832,559 - MPMX26_02749 0.30 -0.6
2,832,666 - MPMX26_02749 0.35 -0.2
2,832,669 - MPMX26_02749 0.35 -0.1
2,832,673 - MPMX26_02749 0.35 +0.6
2,832,674 - MPMX26_02749 0.35 +0.5
2,832,694 - MPMX26_02749 0.36 +0.7
2,832,694 - MPMX26_02749 0.36 +0.2
2,832,694 - MPMX26_02749 0.36 +0.3
2,832,694 - MPMX26_02749 0.36 +0.0
2,832,694 - MPMX26_02749 0.36 -1.1
2,832,699 - MPMX26_02749 0.36 -0.8
2,832,699 - MPMX26_02749 0.36 -1.0
2,832,699 - MPMX26_02749 0.36 +0.2
2,832,699 - MPMX26_02749 0.36 +0.2
2,832,707 - MPMX26_02749 0.36 +1.0
2,832,713 - MPMX26_02749 0.37 -0.1
2,832,731 - MPMX26_02749 0.37 +0.1
2,832,731 - MPMX26_02749 0.37 -1.2
2,832,731 - MPMX26_02749 0.37 -0.9
2,832,770 - MPMX26_02749 0.39 -0.1

Or see this region's nucleotide sequence