Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02474

Experiment: UV exposure at 150J/m2 for 20 seconds

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02472 and MPMX26_02473 are separated by 113 nucleotidesMPMX26_02473 and MPMX26_02474 are separated by 111 nucleotidesMPMX26_02474 and MPMX26_02475 are separated by 301 nucleotidesMPMX26_02475 and MPMX26_02476 are separated by 99 nucleotides MPMX26_02472: MPMX26_02472 - hypothetical protein, at 2,558,115 to 2,559,158 _02472 MPMX26_02473: MPMX26_02473 - hypothetical protein, at 2,559,272 to 2,559,886 _02473 MPMX26_02474: MPMX26_02474 - hypothetical protein, at 2,559,998 to 2,560,162 _02474 MPMX26_02475: MPMX26_02475 - hypothetical protein, at 2,560,464 to 2,560,844 _02475 MPMX26_02476: MPMX26_02476 - Regulator of ribonuclease activity B, at 2,560,944 to 2,561,330 _02476 Position (kb) 2559 2560 2561Strain fitness (log2 ratio) -1 0 1at 2559.349 kb on - strand, within MPMX26_02473at 2559.401 kb on - strand, within MPMX26_02473at 2559.452 kb on + strand, within MPMX26_02473at 2559.503 kb on - strand, within MPMX26_02473at 2559.547 kb on - strand, within MPMX26_02473at 2559.620 kb on - strand, within MPMX26_02473at 2559.620 kb on - strand, within MPMX26_02473at 2559.620 kb on - strand, within MPMX26_02473at 2559.620 kb on - strand, within MPMX26_02473at 2559.620 kb on - strand, within MPMX26_02473at 2559.620 kb on - strand, within MPMX26_02473at 2559.620 kb on - strand, within MPMX26_02473at 2559.715 kb on - strand, within MPMX26_02473at 2559.715 kb on - strand, within MPMX26_02473at 2559.715 kb on - strand, within MPMX26_02473at 2559.728 kb on - strand, within MPMX26_02473at 2559.743 kb on - strand, within MPMX26_02473at 2559.743 kb on - strand, within MPMX26_02473at 2559.758 kb on - strand, within MPMX26_02473at 2559.766 kb on - strand, within MPMX26_02473at 2559.832 kb on - strandat 2560.108 kb on - strand, within MPMX26_02474at 2560.129 kb on - strand, within MPMX26_02474at 2560.787 kb on - strand, within MPMX26_02475at 2561.115 kb on - strand, within MPMX26_02476

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
remove
2,559,349 - MPMX26_02473 0.13 +1.2
2,559,401 - MPMX26_02473 0.21 -0.2
2,559,452 + MPMX26_02473 0.29 -0.2
2,559,503 - MPMX26_02473 0.38 +0.9
2,559,547 - MPMX26_02473 0.45 -0.4
2,559,620 - MPMX26_02473 0.57 -0.9
2,559,620 - MPMX26_02473 0.57 -0.1
2,559,620 - MPMX26_02473 0.57 -0.3
2,559,620 - MPMX26_02473 0.57 +1.0
2,559,620 - MPMX26_02473 0.57 -1.7
2,559,620 - MPMX26_02473 0.57 -0.5
2,559,620 - MPMX26_02473 0.57 +0.6
2,559,715 - MPMX26_02473 0.72 +0.1
2,559,715 - MPMX26_02473 0.72 -0.4
2,559,715 - MPMX26_02473 0.72 -0.5
2,559,728 - MPMX26_02473 0.74 +0.2
2,559,743 - MPMX26_02473 0.77 -1.7
2,559,743 - MPMX26_02473 0.77 +1.1
2,559,758 - MPMX26_02473 0.79 +0.6
2,559,766 - MPMX26_02473 0.80 +0.1
2,559,832 - -0.2
2,560,108 - MPMX26_02474 0.67 -1.0
2,560,129 - MPMX26_02474 0.79 -1.2
2,560,787 - MPMX26_02475 0.85 -0.0
2,561,115 - MPMX26_02476 0.44 +0.2

Or see this region's nucleotide sequence