Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02401

Experiment: UV exposure at 150J/m2 for 20 seconds

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02399 and MPMX26_02400 are separated by 10 nucleotidesMPMX26_02400 and MPMX26_02401 are separated by 18 nucleotidesMPMX26_02401 and MPMX26_02402 are separated by 424 nucleotides MPMX26_02399: MPMX26_02399 - Glycine oxidase, at 2,482,058 to 2,483,191 _02399 MPMX26_02400: MPMX26_02400 - Epimerase family protein, at 2,483,202 to 2,484,116 _02400 MPMX26_02401: MPMX26_02401 - hypothetical protein, at 2,484,135 to 2,484,590 _02401 MPMX26_02402: MPMX26_02402 - Nuclease SbcCD subunit D, at 2,485,015 to 2,486,304 _02402 Position (kb) 2484 2485Strain fitness (log2 ratio) -3 -2 -1 0 1at 2483.145 kb on + strandat 2483.170 kb on + strandat 2483.357 kb on - strand, within MPMX26_02400at 2483.357 kb on - strand, within MPMX26_02400at 2483.369 kb on - strand, within MPMX26_02400at 2483.445 kb on - strand, within MPMX26_02400at 2483.447 kb on - strand, within MPMX26_02400at 2483.447 kb on - strand, within MPMX26_02400at 2483.447 kb on - strand, within MPMX26_02400at 2483.447 kb on - strand, within MPMX26_02400at 2483.447 kb on - strand, within MPMX26_02400at 2483.447 kb on - strand, within MPMX26_02400at 2483.619 kb on - strand, within MPMX26_02400at 2483.696 kb on - strand, within MPMX26_02400at 2483.708 kb on - strand, within MPMX26_02400at 2483.784 kb on - strand, within MPMX26_02400at 2483.792 kb on - strand, within MPMX26_02400at 2483.803 kb on - strand, within MPMX26_02400at 2483.813 kb on - strand, within MPMX26_02400at 2483.813 kb on - strand, within MPMX26_02400at 2483.909 kb on - strand, within MPMX26_02400at 2484.095 kb on - strandat 2484.171 kb on - strandat 2484.171 kb on - strandat 2484.228 kb on - strand, within MPMX26_02401at 2484.412 kb on - strand, within MPMX26_02401at 2484.425 kb on - strand, within MPMX26_02401at 2484.425 kb on - strand, within MPMX26_02401at 2484.425 kb on - strand, within MPMX26_02401at 2484.425 kb on - strand, within MPMX26_02401at 2484.443 kb on - strand, within MPMX26_02401at 2484.497 kb on - strand, within MPMX26_02401at 2484.519 kb on - strand, within MPMX26_02401at 2484.692 kb on + strandat 2484.697 kb on + strandat 2484.700 kb on + strandat 2484.743 kb on + strandat 2484.757 kb on + strandat 2484.757 kb on + strandat 2484.798 kb on + strandat 2484.798 kb on + strandat 2484.798 kb on + strandat 2484.798 kb on + strandat 2485.069 kb on + strandat 2485.117 kb on + strandat 2485.117 kb on + strandat 2485.276 kb on + strand, within MPMX26_02402at 2485.276 kb on + strand, within MPMX26_02402at 2485.329 kb on + strand, within MPMX26_02402at 2485.465 kb on + strand, within MPMX26_02402at 2485.575 kb on + strand, within MPMX26_02402

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
remove
2,483,145 + +0.3
2,483,170 + -0.1
2,483,357 - MPMX26_02400 0.17 -0.1
2,483,357 - MPMX26_02400 0.17 -0.4
2,483,369 - MPMX26_02400 0.18 +0.6
2,483,445 - MPMX26_02400 0.27 +0.0
2,483,447 - MPMX26_02400 0.27 -0.2
2,483,447 - MPMX26_02400 0.27 +0.3
2,483,447 - MPMX26_02400 0.27 +0.1
2,483,447 - MPMX26_02400 0.27 +0.8
2,483,447 - MPMX26_02400 0.27 +0.1
2,483,447 - MPMX26_02400 0.27 +0.4
2,483,619 - MPMX26_02400 0.46 +1.4
2,483,696 - MPMX26_02400 0.54 -0.7
2,483,708 - MPMX26_02400 0.55 +0.3
2,483,784 - MPMX26_02400 0.64 +0.7
2,483,792 - MPMX26_02400 0.64 -0.8
2,483,803 - MPMX26_02400 0.66 +0.3
2,483,813 - MPMX26_02400 0.67 +0.3
2,483,813 - MPMX26_02400 0.67 -0.1
2,483,909 - MPMX26_02400 0.77 +0.2
2,484,095 - -0.2
2,484,171 - -0.7
2,484,171 - -0.1
2,484,228 - MPMX26_02401 0.20 -1.1
2,484,412 - MPMX26_02401 0.61 +0.9
2,484,425 - MPMX26_02401 0.64 -1.2
2,484,425 - MPMX26_02401 0.64 -1.7
2,484,425 - MPMX26_02401 0.64 -0.9
2,484,425 - MPMX26_02401 0.64 -1.7
2,484,443 - MPMX26_02401 0.68 -1.0
2,484,497 - MPMX26_02401 0.79 -1.7
2,484,519 - MPMX26_02401 0.84 -2.7
2,484,692 + +0.4
2,484,697 + +0.2
2,484,700 + -0.3
2,484,743 + +0.5
2,484,757 + +0.5
2,484,757 + +0.1
2,484,798 + -0.5
2,484,798 + +0.0
2,484,798 + +0.0
2,484,798 + -0.0
2,485,069 + +0.2
2,485,117 + -0.4
2,485,117 + -1.2
2,485,276 + MPMX26_02402 0.20 +0.2
2,485,276 + MPMX26_02402 0.20 -2.8
2,485,329 + MPMX26_02402 0.24 +0.9
2,485,465 + MPMX26_02402 0.35 -0.1
2,485,575 + MPMX26_02402 0.43 +0.7

Or see this region's nucleotide sequence