Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02359

Experiment: UV exposure at 150J/m2 for 20 seconds

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02357 and MPMX26_02358 are separated by 51 nucleotidesMPMX26_02358 and MPMX26_02359 are separated by 144 nucleotidesMPMX26_02359 and MPMX26_02360 are separated by 158 nucleotidesMPMX26_02360 and MPMX26_02361 are separated by 26 nucleotides MPMX26_02357: MPMX26_02357 - Proline/betaine transporter, at 2,441,609 to 2,442,877 _02357 MPMX26_02358: MPMX26_02358 - hypothetical protein, at 2,442,929 to 2,443,426 _02358 MPMX26_02359: MPMX26_02359 - hypothetical protein, at 2,443,571 to 2,443,858 _02359 MPMX26_02360: MPMX26_02360 - hypothetical protein, at 2,444,017 to 2,444,481 _02360 MPMX26_02361: MPMX26_02361 - hypothetical protein, at 2,444,508 to 2,445,080 _02361 Position (kb) 2443 2444Strain fitness (log2 ratio) -2 -1 0 1at 2442.648 kb on - strand, within MPMX26_02357at 2442.782 kb on + strandat 2443.185 kb on - strand, within MPMX26_02358at 2443.234 kb on - strand, within MPMX26_02358at 2443.631 kb on - strand, within MPMX26_02359at 2443.695 kb on - strand, within MPMX26_02359at 2443.717 kb on - strand, within MPMX26_02359at 2444.029 kb on + strandat 2444.029 kb on + strandat 2444.069 kb on + strand, within MPMX26_02360at 2444.069 kb on + strand, within MPMX26_02360at 2444.069 kb on + strand, within MPMX26_02360at 2444.092 kb on + strand, within MPMX26_02360at 2444.092 kb on + strand, within MPMX26_02360at 2444.109 kb on + strand, within MPMX26_02360at 2444.146 kb on + strand, within MPMX26_02360at 2444.146 kb on + strand, within MPMX26_02360at 2444.151 kb on + strand, within MPMX26_02360at 2444.174 kb on + strand, within MPMX26_02360at 2444.207 kb on + strand, within MPMX26_02360at 2444.212 kb on + strand, within MPMX26_02360at 2444.212 kb on + strand, within MPMX26_02360at 2444.212 kb on + strand, within MPMX26_02360at 2444.214 kb on + strand, within MPMX26_02360at 2444.227 kb on + strand, within MPMX26_02360at 2444.234 kb on + strand, within MPMX26_02360at 2444.234 kb on + strand, within MPMX26_02360at 2444.234 kb on + strand, within MPMX26_02360at 2444.235 kb on + strand, within MPMX26_02360at 2444.235 kb on - strand, within MPMX26_02360at 2444.236 kb on - strand, within MPMX26_02360at 2444.266 kb on - strand, within MPMX26_02360at 2444.268 kb on + strand, within MPMX26_02360at 2444.299 kb on + strand, within MPMX26_02360at 2444.304 kb on + strand, within MPMX26_02360at 2444.304 kb on + strand, within MPMX26_02360at 2444.304 kb on + strand, within MPMX26_02360at 2444.304 kb on + strand, within MPMX26_02360at 2444.304 kb on + strand, within MPMX26_02360at 2444.304 kb on + strand, within MPMX26_02360at 2444.304 kb on + strand, within MPMX26_02360at 2444.304 kb on + strand, within MPMX26_02360at 2444.304 kb on + strand, within MPMX26_02360at 2444.312 kb on - strand, within MPMX26_02360at 2444.336 kb on + strand, within MPMX26_02360at 2444.418 kb on + strand, within MPMX26_02360at 2444.423 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.433 kb on + strand, within MPMX26_02360at 2444.436 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.441 kb on - strandat 2444.468 kb on - strandat 2444.594 kb on - strand, within MPMX26_02361at 2444.795 kb on - strand, within MPMX26_02361at 2444.810 kb on - strand, within MPMX26_02361at 2444.826 kb on - strand, within MPMX26_02361at 2444.834 kb on - strand, within MPMX26_02361

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
remove
2,442,648 - MPMX26_02357 0.82 +0.2
2,442,782 + -1.1
2,443,185 - MPMX26_02358 0.51 -1.8
2,443,234 - MPMX26_02358 0.61 -0.3
2,443,631 - MPMX26_02359 0.21 -2.6
2,443,695 - MPMX26_02359 0.43 -0.1
2,443,717 - MPMX26_02359 0.51 -0.0
2,444,029 + +0.2
2,444,029 + -0.4
2,444,069 + MPMX26_02360 0.11 -0.4
2,444,069 + MPMX26_02360 0.11 -0.1
2,444,069 + MPMX26_02360 0.11 +0.4
2,444,092 + MPMX26_02360 0.16 +0.2
2,444,092 + MPMX26_02360 0.16 -1.3
2,444,109 + MPMX26_02360 0.20 -0.2
2,444,146 + MPMX26_02360 0.28 +0.3
2,444,146 + MPMX26_02360 0.28 +0.1
2,444,151 + MPMX26_02360 0.29 +0.5
2,444,174 + MPMX26_02360 0.34 -0.3
2,444,207 + MPMX26_02360 0.41 -0.8
2,444,212 + MPMX26_02360 0.42 +0.8
2,444,212 + MPMX26_02360 0.42 -0.1
2,444,212 + MPMX26_02360 0.42 -1.1
2,444,214 + MPMX26_02360 0.42 -0.2
2,444,227 + MPMX26_02360 0.45 -0.9
2,444,234 + MPMX26_02360 0.47 +0.1
2,444,234 + MPMX26_02360 0.47 -0.9
2,444,234 + MPMX26_02360 0.47 -0.2
2,444,235 + MPMX26_02360 0.47 -0.6
2,444,235 - MPMX26_02360 0.47 -1.3
2,444,236 - MPMX26_02360 0.47 +0.2
2,444,266 - MPMX26_02360 0.54 +0.6
2,444,268 + MPMX26_02360 0.54 -0.3
2,444,299 + MPMX26_02360 0.61 +0.2
2,444,304 + MPMX26_02360 0.62 +0.5
2,444,304 + MPMX26_02360 0.62 -0.2
2,444,304 + MPMX26_02360 0.62 +0.2
2,444,304 + MPMX26_02360 0.62 -0.9
2,444,304 + MPMX26_02360 0.62 +0.1
2,444,304 + MPMX26_02360 0.62 +0.1
2,444,304 + MPMX26_02360 0.62 -0.3
2,444,304 + MPMX26_02360 0.62 -0.7
2,444,304 + MPMX26_02360 0.62 -0.3
2,444,312 - MPMX26_02360 0.63 +0.2
2,444,336 + MPMX26_02360 0.69 +0.3
2,444,418 + MPMX26_02360 0.86 -1.0
2,444,423 + MPMX26_02360 0.87 +0.4
2,444,433 + MPMX26_02360 0.89 +0.6
2,444,433 + MPMX26_02360 0.89 -0.1
2,444,433 + MPMX26_02360 0.89 -0.1
2,444,433 + MPMX26_02360 0.89 +0.4
2,444,433 + MPMX26_02360 0.89 -0.5
2,444,433 + MPMX26_02360 0.89 +0.3
2,444,433 + MPMX26_02360 0.89 -1.5
2,444,433 + MPMX26_02360 0.89 +0.2
2,444,433 + MPMX26_02360 0.89 +0.9
2,444,433 + MPMX26_02360 0.89 +1.0
2,444,433 + MPMX26_02360 0.89 +0.9
2,444,436 - -1.2
2,444,441 - -1.1
2,444,441 - +0.3
2,444,441 - -1.1
2,444,441 - -0.1
2,444,441 - +0.4
2,444,441 - -0.4
2,444,441 - -1.0
2,444,441 - -0.0
2,444,441 - -0.6
2,444,441 - -0.2
2,444,441 - +0.8
2,444,441 - -0.9
2,444,468 - -0.8
2,444,594 - MPMX26_02361 0.15 +0.5
2,444,795 - MPMX26_02361 0.50 -0.6
2,444,810 - MPMX26_02361 0.53 +0.0
2,444,826 - MPMX26_02361 0.55 -0.4
2,444,834 - MPMX26_02361 0.57 +0.4

Or see this region's nucleotide sequence