Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02159

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02157 and MPMX26_02158 are separated by 21 nucleotidesMPMX26_02158 and MPMX26_02159 are separated by 21 nucleotidesMPMX26_02159 and MPMX26_02160 are separated by 174 nucleotidesMPMX26_02160 and MPMX26_02161 are separated by 123 nucleotides MPMX26_02157: MPMX26_02157 - hypothetical protein, at 2,212,048 to 2,212,413 _02157 MPMX26_02158: MPMX26_02158 - Signal peptidase I, at 2,212,435 to 2,213,262 _02158 MPMX26_02159: MPMX26_02159 - Elongation factor 4, at 2,213,284 to 2,215,101 _02159 MPMX26_02160: MPMX26_02160 - hypothetical protein, at 2,215,276 to 2,215,719 _02160 MPMX26_02161: MPMX26_02161 - Periplasmic pH-dependent serine endoprotease DegQ, at 2,215,843 to 2,217,225 _02161 Position (kb) 2213 2214 2215 2216Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2212.340 kb on - strand, within MPMX26_02157at 2212.340 kb on - strand, within MPMX26_02157at 2212.345 kb on - strand, within MPMX26_02157at 2212.345 kb on - strand, within MPMX26_02157at 2212.401 kb on - strandat 2212.411 kb on - strandat 2212.411 kb on - strandat 2212.423 kb on - strandat 2212.463 kb on - strandat 2212.470 kb on - strandat 2212.470 kb on - strandat 2212.506 kb on - strandat 2212.506 kb on - strandat 2212.506 kb on - strandat 2212.506 kb on - strandat 2212.506 kb on - strandat 2213.326 kb on - strandat 2213.341 kb on - strandat 2213.344 kb on - strandat 2213.344 kb on - strandat 2213.419 kb on - strandat 2213.419 kb on - strandat 2213.451 kb on - strandat 2213.485 kb on - strand, within MPMX26_02159at 2213.552 kb on - strand, within MPMX26_02159at 2213.552 kb on - strand, within MPMX26_02159at 2213.552 kb on - strand, within MPMX26_02159at 2213.552 kb on - strand, within MPMX26_02159at 2213.552 kb on - strand, within MPMX26_02159at 2213.617 kb on - strand, within MPMX26_02159at 2213.645 kb on - strand, within MPMX26_02159at 2213.684 kb on - strand, within MPMX26_02159at 2213.693 kb on - strand, within MPMX26_02159at 2213.761 kb on - strand, within MPMX26_02159at 2213.810 kb on - strand, within MPMX26_02159at 2213.810 kb on - strand, within MPMX26_02159at 2213.810 kb on - strand, within MPMX26_02159at 2213.810 kb on - strand, within MPMX26_02159at 2213.815 kb on - strand, within MPMX26_02159at 2213.830 kb on - strand, within MPMX26_02159at 2213.830 kb on - strand, within MPMX26_02159at 2213.859 kb on - strand, within MPMX26_02159at 2213.860 kb on - strand, within MPMX26_02159at 2213.974 kb on - strand, within MPMX26_02159at 2213.974 kb on - strand, within MPMX26_02159at 2213.986 kb on - strand, within MPMX26_02159at 2214.054 kb on - strand, within MPMX26_02159at 2214.086 kb on - strand, within MPMX26_02159at 2214.189 kb on - strand, within MPMX26_02159at 2214.252 kb on - strand, within MPMX26_02159at 2214.390 kb on - strand, within MPMX26_02159at 2214.598 kb on - strand, within MPMX26_02159at 2214.598 kb on - strand, within MPMX26_02159at 2214.664 kb on - strand, within MPMX26_02159at 2214.957 kb on - strandat 2215.002 kb on - strandat 2215.340 kb on - strand, within MPMX26_02160at 2215.423 kb on - strand, within MPMX26_02160at 2215.444 kb on - strand, within MPMX26_02160at 2215.462 kb on - strand, within MPMX26_02160at 2215.464 kb on - strand, within MPMX26_02160at 2215.533 kb on - strand, within MPMX26_02160at 2215.533 kb on - strand, within MPMX26_02160at 2215.533 kb on - strand, within MPMX26_02160at 2215.659 kb on - strand, within MPMX26_02160at 2215.898 kb on - strandat 2215.912 kb on - strandat 2215.912 kb on - strandat 2215.959 kb on - strandat 2215.959 kb on - strandat 2216.013 kb on - strand, within MPMX26_02161at 2216.013 kb on - strand, within MPMX26_02161at 2216.013 kb on - strand, within MPMX26_02161at 2216.013 kb on - strand, within MPMX26_02161at 2216.068 kb on - strand, within MPMX26_02161

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,212,340 - MPMX26_02157 0.80 -0.5
2,212,340 - MPMX26_02157 0.80 +0.1
2,212,345 - MPMX26_02157 0.81 +0.2
2,212,345 - MPMX26_02157 0.81 +0.2
2,212,401 - -0.3
2,212,411 - -0.1
2,212,411 - -0.4
2,212,423 - +0.0
2,212,463 - -0.3
2,212,470 - -0.2
2,212,470 - +0.1
2,212,506 - +0.2
2,212,506 - -0.7
2,212,506 - -0.4
2,212,506 - -0.7
2,212,506 - -1.5
2,213,326 - -1.4
2,213,341 - -2.5
2,213,344 - -1.0
2,213,344 - -0.7
2,213,419 - +0.2
2,213,419 - +0.6
2,213,451 - -0.5
2,213,485 - MPMX26_02159 0.11 +0.9
2,213,552 - MPMX26_02159 0.15 -0.0
2,213,552 - MPMX26_02159 0.15 -0.4
2,213,552 - MPMX26_02159 0.15 -1.3
2,213,552 - MPMX26_02159 0.15 -0.7
2,213,552 - MPMX26_02159 0.15 +0.3
2,213,617 - MPMX26_02159 0.18 +3.3
2,213,645 - MPMX26_02159 0.20 -1.5
2,213,684 - MPMX26_02159 0.22 +1.1
2,213,693 - MPMX26_02159 0.22 -0.8
2,213,761 - MPMX26_02159 0.26 -2.2
2,213,810 - MPMX26_02159 0.29 -1.3
2,213,810 - MPMX26_02159 0.29 -0.7
2,213,810 - MPMX26_02159 0.29 -2.1
2,213,810 - MPMX26_02159 0.29 +0.7
2,213,815 - MPMX26_02159 0.29 -0.1
2,213,830 - MPMX26_02159 0.30 +0.9
2,213,830 - MPMX26_02159 0.30 +0.1
2,213,859 - MPMX26_02159 0.32 -0.3
2,213,860 - MPMX26_02159 0.32 -0.7
2,213,974 - MPMX26_02159 0.38 -2.0
2,213,974 - MPMX26_02159 0.38 -0.3
2,213,986 - MPMX26_02159 0.39 -1.0
2,214,054 - MPMX26_02159 0.42 -1.5
2,214,086 - MPMX26_02159 0.44 -0.9
2,214,189 - MPMX26_02159 0.50 -0.7
2,214,252 - MPMX26_02159 0.53 +0.7
2,214,390 - MPMX26_02159 0.61 -0.9
2,214,598 - MPMX26_02159 0.72 -1.1
2,214,598 - MPMX26_02159 0.72 -1.7
2,214,664 - MPMX26_02159 0.76 -0.7
2,214,957 - -1.0
2,215,002 - -1.1
2,215,340 - MPMX26_02160 0.14 -0.5
2,215,423 - MPMX26_02160 0.33 -1.0
2,215,444 - MPMX26_02160 0.38 -0.4
2,215,462 - MPMX26_02160 0.42 +0.8
2,215,464 - MPMX26_02160 0.42 +0.6
2,215,533 - MPMX26_02160 0.58 +0.5
2,215,533 - MPMX26_02160 0.58 +0.1
2,215,533 - MPMX26_02160 0.58 +1.0
2,215,659 - MPMX26_02160 0.86 -0.1
2,215,898 - +0.1
2,215,912 - +0.4
2,215,912 - -0.0
2,215,959 - +0.2
2,215,959 - -0.1
2,216,013 - MPMX26_02161 0.12 +0.1
2,216,013 - MPMX26_02161 0.12 +0.3
2,216,013 - MPMX26_02161 0.12 -0.6
2,216,013 - MPMX26_02161 0.12 -0.0
2,216,068 - MPMX26_02161 0.16 -0.9

Or see this region's nucleotide sequence