Experiment: UV exposure at 150J/m2 for 20 seconds
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02157 and MPMX26_02158 are separated by 21 nucleotides MPMX26_02158 and MPMX26_02159 are separated by 21 nucleotides MPMX26_02159 and MPMX26_02160 are separated by 174 nucleotides MPMX26_02160 and MPMX26_02161 are separated by 123 nucleotides
MPMX26_02157: MPMX26_02157 - hypothetical protein, at 2,212,048 to 2,212,413
_02157
MPMX26_02158: MPMX26_02158 - Signal peptidase I, at 2,212,435 to 2,213,262
_02158
MPMX26_02159: MPMX26_02159 - Elongation factor 4, at 2,213,284 to 2,215,101
_02159
MPMX26_02160: MPMX26_02160 - hypothetical protein, at 2,215,276 to 2,215,719
_02160
MPMX26_02161: MPMX26_02161 - Periplasmic pH-dependent serine endoprotease DegQ, at 2,215,843 to 2,217,225
_02161
Position (kb)
2213
2214
2215
2216 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2212.340 kb on - strand, within MPMX26_02157 at 2212.340 kb on - strand, within MPMX26_02157 at 2212.345 kb on - strand, within MPMX26_02157 at 2212.345 kb on - strand, within MPMX26_02157 at 2212.401 kb on - strand at 2212.411 kb on - strand at 2212.411 kb on - strand at 2212.423 kb on - strand at 2212.463 kb on - strand at 2212.470 kb on - strand at 2212.470 kb on - strand at 2212.506 kb on - strand at 2212.506 kb on - strand at 2212.506 kb on - strand at 2212.506 kb on - strand at 2212.506 kb on - strand at 2213.326 kb on - strand at 2213.341 kb on - strand at 2213.344 kb on - strand at 2213.344 kb on - strand at 2213.419 kb on - strand at 2213.419 kb on - strand at 2213.451 kb on - strand at 2213.485 kb on - strand, within MPMX26_02159 at 2213.552 kb on - strand, within MPMX26_02159 at 2213.552 kb on - strand, within MPMX26_02159 at 2213.552 kb on - strand, within MPMX26_02159 at 2213.552 kb on - strand, within MPMX26_02159 at 2213.552 kb on - strand, within MPMX26_02159 at 2213.617 kb on - strand, within MPMX26_02159 at 2213.645 kb on - strand, within MPMX26_02159 at 2213.684 kb on - strand, within MPMX26_02159 at 2213.693 kb on - strand, within MPMX26_02159 at 2213.761 kb on - strand, within MPMX26_02159 at 2213.810 kb on - strand, within MPMX26_02159 at 2213.810 kb on - strand, within MPMX26_02159 at 2213.810 kb on - strand, within MPMX26_02159 at 2213.810 kb on - strand, within MPMX26_02159 at 2213.815 kb on - strand, within MPMX26_02159 at 2213.830 kb on - strand, within MPMX26_02159 at 2213.830 kb on - strand, within MPMX26_02159 at 2213.859 kb on - strand, within MPMX26_02159 at 2213.860 kb on - strand, within MPMX26_02159 at 2213.974 kb on - strand, within MPMX26_02159 at 2213.974 kb on - strand, within MPMX26_02159 at 2213.986 kb on - strand, within MPMX26_02159 at 2214.054 kb on - strand, within MPMX26_02159 at 2214.086 kb on - strand, within MPMX26_02159 at 2214.189 kb on - strand, within MPMX26_02159 at 2214.252 kb on - strand, within MPMX26_02159 at 2214.390 kb on - strand, within MPMX26_02159 at 2214.598 kb on - strand, within MPMX26_02159 at 2214.598 kb on - strand, within MPMX26_02159 at 2214.664 kb on - strand, within MPMX26_02159 at 2214.957 kb on - strand at 2215.002 kb on - strand at 2215.340 kb on - strand, within MPMX26_02160 at 2215.423 kb on - strand, within MPMX26_02160 at 2215.444 kb on - strand, within MPMX26_02160 at 2215.462 kb on - strand, within MPMX26_02160 at 2215.464 kb on - strand, within MPMX26_02160 at 2215.533 kb on - strand, within MPMX26_02160 at 2215.533 kb on - strand, within MPMX26_02160 at 2215.533 kb on - strand, within MPMX26_02160 at 2215.659 kb on - strand, within MPMX26_02160 at 2215.898 kb on - strand at 2215.912 kb on - strand at 2215.912 kb on - strand at 2215.959 kb on - strand at 2215.959 kb on - strand at 2216.013 kb on - strand, within MPMX26_02161 at 2216.013 kb on - strand, within MPMX26_02161 at 2216.013 kb on - strand, within MPMX26_02161 at 2216.013 kb on - strand, within MPMX26_02161 at 2216.068 kb on - strand, within MPMX26_02161
Per-strain Table
Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds remove 2,212,340 - MPMX26_02157 0.80 -0.5 2,212,340 - MPMX26_02157 0.80 +0.1 2,212,345 - MPMX26_02157 0.81 +0.2 2,212,345 - MPMX26_02157 0.81 +0.2 2,212,401 - -0.3 2,212,411 - -0.1 2,212,411 - -0.4 2,212,423 - +0.0 2,212,463 - -0.3 2,212,470 - -0.2 2,212,470 - +0.1 2,212,506 - +0.2 2,212,506 - -0.7 2,212,506 - -0.4 2,212,506 - -0.7 2,212,506 - -1.5 2,213,326 - -1.4 2,213,341 - -2.5 2,213,344 - -1.0 2,213,344 - -0.7 2,213,419 - +0.2 2,213,419 - +0.6 2,213,451 - -0.5 2,213,485 - MPMX26_02159 0.11 +0.9 2,213,552 - MPMX26_02159 0.15 -0.0 2,213,552 - MPMX26_02159 0.15 -0.4 2,213,552 - MPMX26_02159 0.15 -1.3 2,213,552 - MPMX26_02159 0.15 -0.7 2,213,552 - MPMX26_02159 0.15 +0.3 2,213,617 - MPMX26_02159 0.18 +3.3 2,213,645 - MPMX26_02159 0.20 -1.5 2,213,684 - MPMX26_02159 0.22 +1.1 2,213,693 - MPMX26_02159 0.22 -0.8 2,213,761 - MPMX26_02159 0.26 -2.2 2,213,810 - MPMX26_02159 0.29 -1.3 2,213,810 - MPMX26_02159 0.29 -0.7 2,213,810 - MPMX26_02159 0.29 -2.1 2,213,810 - MPMX26_02159 0.29 +0.7 2,213,815 - MPMX26_02159 0.29 -0.1 2,213,830 - MPMX26_02159 0.30 +0.9 2,213,830 - MPMX26_02159 0.30 +0.1 2,213,859 - MPMX26_02159 0.32 -0.3 2,213,860 - MPMX26_02159 0.32 -0.7 2,213,974 - MPMX26_02159 0.38 -2.0 2,213,974 - MPMX26_02159 0.38 -0.3 2,213,986 - MPMX26_02159 0.39 -1.0 2,214,054 - MPMX26_02159 0.42 -1.5 2,214,086 - MPMX26_02159 0.44 -0.9 2,214,189 - MPMX26_02159 0.50 -0.7 2,214,252 - MPMX26_02159 0.53 +0.7 2,214,390 - MPMX26_02159 0.61 -0.9 2,214,598 - MPMX26_02159 0.72 -1.1 2,214,598 - MPMX26_02159 0.72 -1.7 2,214,664 - MPMX26_02159 0.76 -0.7 2,214,957 - -1.0 2,215,002 - -1.1 2,215,340 - MPMX26_02160 0.14 -0.5 2,215,423 - MPMX26_02160 0.33 -1.0 2,215,444 - MPMX26_02160 0.38 -0.4 2,215,462 - MPMX26_02160 0.42 +0.8 2,215,464 - MPMX26_02160 0.42 +0.6 2,215,533 - MPMX26_02160 0.58 +0.5 2,215,533 - MPMX26_02160 0.58 +0.1 2,215,533 - MPMX26_02160 0.58 +1.0 2,215,659 - MPMX26_02160 0.86 -0.1 2,215,898 - +0.1 2,215,912 - +0.4 2,215,912 - -0.0 2,215,959 - +0.2 2,215,959 - -0.1 2,216,013 - MPMX26_02161 0.12 +0.1 2,216,013 - MPMX26_02161 0.12 +0.3 2,216,013 - MPMX26_02161 0.12 -0.6 2,216,013 - MPMX26_02161 0.12 -0.0 2,216,068 - MPMX26_02161 0.16 -0.9
Or see this region's nucleotide sequence