Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02105

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02103 and MPMX26_02104 overlap by 4 nucleotidesMPMX26_02104 and MPMX26_02105 overlap by 4 nucleotidesMPMX26_02105 and MPMX26_02106 are separated by 25 nucleotidesMPMX26_02106 and MPMX26_02107 are separated by 180 nucleotides MPMX26_02103: MPMX26_02103 - putative ABC transporter ATP-binding protein YadG, at 2,157,614 to 2,158,549 _02103 MPMX26_02104: MPMX26_02104 - Inner membrane transport permease YadH, at 2,158,546 to 2,159,319 _02104 MPMX26_02105: MPMX26_02105 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 2,159,316 to 2,160,128 _02105 MPMX26_02106: MPMX26_02106 - hypothetical protein, at 2,160,154 to 2,160,804 _02106 MPMX26_02107: MPMX26_02107 - Peptidoglycan glycosyltransferase MrdB, at 2,160,985 to 2,162,127 _02107 Position (kb) 2159 2160 2161Strain fitness (log2 ratio) -2 -1 0 1 2at 2158.321 kb on + strand, within MPMX26_02103at 2158.321 kb on + strand, within MPMX26_02103at 2158.330 kb on + strand, within MPMX26_02103at 2158.432 kb on + strand, within MPMX26_02103at 2158.432 kb on + strand, within MPMX26_02103at 2158.432 kb on + strand, within MPMX26_02103at 2158.432 kb on + strand, within MPMX26_02103at 2158.472 kb on + strandat 2158.614 kb on + strandat 2158.614 kb on + strandat 2158.621 kb on + strandat 2158.626 kb on + strand, within MPMX26_02104at 2158.632 kb on + strand, within MPMX26_02104at 2158.632 kb on + strand, within MPMX26_02104at 2158.699 kb on + strand, within MPMX26_02104at 2158.712 kb on + strand, within MPMX26_02104at 2158.727 kb on + strand, within MPMX26_02104at 2158.746 kb on + strand, within MPMX26_02104at 2158.780 kb on + strand, within MPMX26_02104at 2158.841 kb on + strand, within MPMX26_02104at 2158.854 kb on + strand, within MPMX26_02104at 2158.888 kb on + strand, within MPMX26_02104at 2158.898 kb on + strand, within MPMX26_02104at 2158.900 kb on + strand, within MPMX26_02104at 2158.900 kb on + strand, within MPMX26_02104at 2158.900 kb on + strand, within MPMX26_02104at 2158.905 kb on + strand, within MPMX26_02104at 2158.905 kb on + strand, within MPMX26_02104at 2158.905 kb on + strand, within MPMX26_02104at 2158.910 kb on + strand, within MPMX26_02104at 2158.945 kb on + strand, within MPMX26_02104at 2158.945 kb on + strand, within MPMX26_02104at 2158.945 kb on + strand, within MPMX26_02104at 2158.950 kb on + strand, within MPMX26_02104at 2159.001 kb on + strand, within MPMX26_02104at 2159.001 kb on + strand, within MPMX26_02104at 2159.097 kb on + strand, within MPMX26_02104at 2159.097 kb on + strand, within MPMX26_02104at 2159.101 kb on + strand, within MPMX26_02104at 2159.104 kb on + strand, within MPMX26_02104at 2159.152 kb on + strand, within MPMX26_02104at 2159.178 kb on + strand, within MPMX26_02104at 2159.248 kb on + strandat 2159.248 kb on + strandat 2159.248 kb on + strandat 2159.253 kb on + strandat 2159.253 kb on + strandat 2159.263 kb on + strandat 2159.310 kb on + strandat 2159.320 kb on + strandat 2159.405 kb on + strand, within MPMX26_02105at 2159.405 kb on + strand, within MPMX26_02105at 2159.405 kb on + strand, within MPMX26_02105at 2159.405 kb on + strand, within MPMX26_02105at 2159.415 kb on + strand, within MPMX26_02105at 2159.415 kb on + strand, within MPMX26_02105at 2159.415 kb on + strand, within MPMX26_02105at 2159.415 kb on + strand, within MPMX26_02105at 2159.426 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.445 kb on + strand, within MPMX26_02105at 2159.499 kb on + strand, within MPMX26_02105at 2159.519 kb on + strand, within MPMX26_02105at 2159.717 kb on + strand, within MPMX26_02105at 2159.783 kb on + strand, within MPMX26_02105at 2159.785 kb on + strand, within MPMX26_02105at 2159.785 kb on + strand, within MPMX26_02105at 2159.785 kb on + strand, within MPMX26_02105at 2159.785 kb on + strand, within MPMX26_02105at 2159.785 kb on + strand, within MPMX26_02105at 2159.919 kb on + strand, within MPMX26_02105at 2159.919 kb on + strand, within MPMX26_02105at 2159.948 kb on + strand, within MPMX26_02105at 2159.949 kb on + strand, within MPMX26_02105at 2159.976 kb on + strand, within MPMX26_02105at 2159.991 kb on + strand, within MPMX26_02105at 2160.037 kb on + strand, within MPMX26_02105at 2160.049 kb on + strandat 2160.084 kb on + strandat 2160.084 kb on + strandat 2160.177 kb on + strandat 2160.177 kb on + strandat 2160.237 kb on + strand, within MPMX26_02106at 2160.237 kb on + strand, within MPMX26_02106at 2160.237 kb on + strand, within MPMX26_02106at 2160.237 kb on + strand, within MPMX26_02106at 2160.237 kb on + strand, within MPMX26_02106at 2160.336 kb on + strand, within MPMX26_02106at 2160.336 kb on + strand, within MPMX26_02106at 2160.361 kb on + strand, within MPMX26_02106at 2160.365 kb on + strand, within MPMX26_02106at 2160.365 kb on + strand, within MPMX26_02106at 2160.400 kb on + strand, within MPMX26_02106at 2160.427 kb on + strand, within MPMX26_02106at 2160.427 kb on + strand, within MPMX26_02106at 2160.462 kb on + strand, within MPMX26_02106at 2160.462 kb on + strand, within MPMX26_02106at 2160.462 kb on + strand, within MPMX26_02106at 2160.462 kb on + strand, within MPMX26_02106at 2160.483 kb on + strand, within MPMX26_02106at 2160.483 kb on + strand, within MPMX26_02106at 2160.562 kb on + strand, within MPMX26_02106at 2160.562 kb on + strand, within MPMX26_02106at 2160.572 kb on + strand, within MPMX26_02106at 2160.572 kb on + strand, within MPMX26_02106at 2160.572 kb on + strand, within MPMX26_02106at 2160.577 kb on + strand, within MPMX26_02106at 2160.598 kb on + strand, within MPMX26_02106at 2160.600 kb on + strand, within MPMX26_02106at 2160.647 kb on + strand, within MPMX26_02106at 2160.647 kb on + strand, within MPMX26_02106at 2160.669 kb on + strand, within MPMX26_02106at 2160.691 kb on + strand, within MPMX26_02106at 2160.692 kb on + strand, within MPMX26_02106at 2160.702 kb on + strand, within MPMX26_02106at 2160.702 kb on + strand, within MPMX26_02106at 2160.702 kb on + strand, within MPMX26_02106at 2160.702 kb on + strand, within MPMX26_02106at 2160.702 kb on + strand, within MPMX26_02106at 2160.702 kb on + strand, within MPMX26_02106at 2160.709 kb on + strand, within MPMX26_02106at 2160.724 kb on + strand, within MPMX26_02106at 2160.838 kb on + strandat 2160.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,158,321 + MPMX26_02103 0.76 +0.4
2,158,321 + MPMX26_02103 0.76 -0.5
2,158,330 + MPMX26_02103 0.76 +2.7
2,158,432 + MPMX26_02103 0.87 +2.1
2,158,432 + MPMX26_02103 0.87 +1.2
2,158,432 + MPMX26_02103 0.87 +0.5
2,158,432 + MPMX26_02103 0.87 +0.7
2,158,472 + -0.4
2,158,614 + +0.1
2,158,614 + +0.3
2,158,621 + -0.2
2,158,626 + MPMX26_02104 0.10 -1.3
2,158,632 + MPMX26_02104 0.11 +0.1
2,158,632 + MPMX26_02104 0.11 -0.6
2,158,699 + MPMX26_02104 0.20 +0.0
2,158,712 + MPMX26_02104 0.21 +0.0
2,158,727 + MPMX26_02104 0.23 -0.6
2,158,746 + MPMX26_02104 0.26 -0.2
2,158,780 + MPMX26_02104 0.30 -0.1
2,158,841 + MPMX26_02104 0.38 -0.7
2,158,854 + MPMX26_02104 0.40 +0.7
2,158,888 + MPMX26_02104 0.44 -0.5
2,158,898 + MPMX26_02104 0.45 -0.1
2,158,900 + MPMX26_02104 0.46 +0.3
2,158,900 + MPMX26_02104 0.46 +0.1
2,158,900 + MPMX26_02104 0.46 -0.2
2,158,905 + MPMX26_02104 0.46 +0.3
2,158,905 + MPMX26_02104 0.46 +0.1
2,158,905 + MPMX26_02104 0.46 -0.4
2,158,910 + MPMX26_02104 0.47 -1.4
2,158,945 + MPMX26_02104 0.52 +0.1
2,158,945 + MPMX26_02104 0.52 +0.2
2,158,945 + MPMX26_02104 0.52 -0.6
2,158,950 + MPMX26_02104 0.52 +0.5
2,159,001 + MPMX26_02104 0.59 +0.1
2,159,001 + MPMX26_02104 0.59 -0.5
2,159,097 + MPMX26_02104 0.71 +0.3
2,159,097 + MPMX26_02104 0.71 +0.3
2,159,101 + MPMX26_02104 0.72 +0.4
2,159,104 + MPMX26_02104 0.72 +0.1
2,159,152 + MPMX26_02104 0.78 +0.4
2,159,178 + MPMX26_02104 0.82 -0.0
2,159,248 + +0.2
2,159,248 + -1.1
2,159,248 + -1.3
2,159,253 + -0.4
2,159,253 + -0.0
2,159,263 + -0.3
2,159,310 + +0.9
2,159,320 + +0.3
2,159,405 + MPMX26_02105 0.11 -0.3
2,159,405 + MPMX26_02105 0.11 -1.1
2,159,405 + MPMX26_02105 0.11 -1.0
2,159,405 + MPMX26_02105 0.11 +0.1
2,159,415 + MPMX26_02105 0.12 -0.6
2,159,415 + MPMX26_02105 0.12 +0.7
2,159,415 + MPMX26_02105 0.12 -0.5
2,159,415 + MPMX26_02105 0.12 -0.5
2,159,426 + MPMX26_02105 0.14 -1.2
2,159,445 + MPMX26_02105 0.16 -0.9
2,159,445 + MPMX26_02105 0.16 -0.6
2,159,445 + MPMX26_02105 0.16 -1.3
2,159,445 + MPMX26_02105 0.16 -0.8
2,159,445 + MPMX26_02105 0.16 -1.7
2,159,445 + MPMX26_02105 0.16 -0.8
2,159,445 + MPMX26_02105 0.16 -1.2
2,159,445 + MPMX26_02105 0.16 -0.7
2,159,445 + MPMX26_02105 0.16 +0.2
2,159,445 + MPMX26_02105 0.16 -1.4
2,159,445 + MPMX26_02105 0.16 -2.2
2,159,499 + MPMX26_02105 0.23 -0.2
2,159,519 + MPMX26_02105 0.25 -1.8
2,159,717 + MPMX26_02105 0.49 -0.8
2,159,783 + MPMX26_02105 0.57 -0.9
2,159,785 + MPMX26_02105 0.58 -1.9
2,159,785 + MPMX26_02105 0.58 +0.2
2,159,785 + MPMX26_02105 0.58 -1.3
2,159,785 + MPMX26_02105 0.58 -0.9
2,159,785 + MPMX26_02105 0.58 +0.1
2,159,919 + MPMX26_02105 0.74 -0.8
2,159,919 + MPMX26_02105 0.74 -0.7
2,159,948 + MPMX26_02105 0.78 -2.1
2,159,949 + MPMX26_02105 0.78 -0.1
2,159,976 + MPMX26_02105 0.81 -0.3
2,159,991 + MPMX26_02105 0.83 +1.7
2,160,037 + MPMX26_02105 0.89 -0.1
2,160,049 + +0.2
2,160,084 + -2.2
2,160,084 + +1.2
2,160,177 + -0.4
2,160,177 + +0.0
2,160,237 + MPMX26_02106 0.13 -0.4
2,160,237 + MPMX26_02106 0.13 -0.2
2,160,237 + MPMX26_02106 0.13 +0.3
2,160,237 + MPMX26_02106 0.13 +0.2
2,160,237 + MPMX26_02106 0.13 +0.5
2,160,336 + MPMX26_02106 0.28 +0.0
2,160,336 + MPMX26_02106 0.28 +0.4
2,160,361 + MPMX26_02106 0.32 -0.4
2,160,365 + MPMX26_02106 0.32 +1.3
2,160,365 + MPMX26_02106 0.32 +0.3
2,160,400 + MPMX26_02106 0.38 -0.1
2,160,427 + MPMX26_02106 0.42 +0.1
2,160,427 + MPMX26_02106 0.42 -0.0
2,160,462 + MPMX26_02106 0.47 +0.1
2,160,462 + MPMX26_02106 0.47 +0.2
2,160,462 + MPMX26_02106 0.47 +0.1
2,160,462 + MPMX26_02106 0.47 +0.2
2,160,483 + MPMX26_02106 0.51 +0.4
2,160,483 + MPMX26_02106 0.51 +0.4
2,160,562 + MPMX26_02106 0.63 +0.1
2,160,562 + MPMX26_02106 0.63 +0.6
2,160,572 + MPMX26_02106 0.64 +0.3
2,160,572 + MPMX26_02106 0.64 -0.0
2,160,572 + MPMX26_02106 0.64 +0.1
2,160,577 + MPMX26_02106 0.65 -0.1
2,160,598 + MPMX26_02106 0.68 -0.4
2,160,600 + MPMX26_02106 0.69 +0.2
2,160,647 + MPMX26_02106 0.76 -0.2
2,160,647 + MPMX26_02106 0.76 -0.1
2,160,669 + MPMX26_02106 0.79 +0.4
2,160,691 + MPMX26_02106 0.82 +0.3
2,160,692 + MPMX26_02106 0.83 +0.7
2,160,702 + MPMX26_02106 0.84 -0.2
2,160,702 + MPMX26_02106 0.84 +0.3
2,160,702 + MPMX26_02106 0.84 +0.2
2,160,702 + MPMX26_02106 0.84 +0.4
2,160,702 + MPMX26_02106 0.84 +0.3
2,160,702 + MPMX26_02106 0.84 -1.2
2,160,709 + MPMX26_02106 0.85 +1.2
2,160,724 + MPMX26_02106 0.88 +0.1
2,160,838 + +0.3
2,160,838 + +2.1

Or see this region's nucleotide sequence