Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02040

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02039 and MPMX26_02040 are separated by 210 nucleotidesMPMX26_02040 and MPMX26_02041 are separated by 1 nucleotidesMPMX26_02041 and MPMX26_02042 are separated by 210 nucleotides MPMX26_02039: MPMX26_02039 - Ferredoxin--NADP reductase, at 2,105,497 to 2,106,276 _02039 MPMX26_02040: MPMX26_02040 - 23S rRNA 5-hydroxycytidine synthase, at 2,106,487 to 2,107,881 _02040 MPMX26_02041: MPMX26_02041 - Ferredoxin YfhL, at 2,107,883 to 2,108,146 _02041 MPMX26_02042: MPMX26_02042 - Alkyl hydroperoxide reductase subunit F, at 2,108,357 to 2,109,922 _02042 Position (kb) 2106 2107 2108Strain fitness (log2 ratio) -1 0 1at 2108.393 kb on - strandat 2108.401 kb on - strandat 2108.699 kb on - strand, within MPMX26_02042at 2108.699 kb on - strand, within MPMX26_02042at 2108.699 kb on - strand, within MPMX26_02042at 2108.701 kb on - strand, within MPMX26_02042at 2108.701 kb on - strand, within MPMX26_02042at 2108.872 kb on - strand, within MPMX26_02042

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,108,393 - +0.4
2,108,401 - -0.0
2,108,699 - MPMX26_02042 0.22 +0.2
2,108,699 - MPMX26_02042 0.22 +0.1
2,108,699 - MPMX26_02042 0.22 +0.3
2,108,701 - MPMX26_02042 0.22 -0.5
2,108,701 - MPMX26_02042 0.22 -0.8
2,108,872 - MPMX26_02042 0.33 -0.4

Or see this region's nucleotide sequence