Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01918

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01917 and MPMX26_01918 are separated by 545 nucleotidesMPMX26_01918 and MPMX26_01919 are separated by 93 nucleotidesMPMX26_01919 and MPMX26_01920 are separated by 185 nucleotides MPMX26_01917: MPMX26_01917 - hypothetical protein, at 1,958,505 to 1,960,073 _01917 MPMX26_01918: MPMX26_01918 - Homoserine/homoserine lactone efflux protein, at 1,960,619 to 1,961,230 _01918 MPMX26_01919: MPMX26_01919 - FMN reductase (NADH) RutF, at 1,961,324 to 1,961,815 _01919 MPMX26_01920: MPMX26_01920 - 2-hydroxypropyl-CoM lyase, at 1,962,001 to 1,963,044 _01920 Position (kb) 1960 1961 1962Strain fitness (log2 ratio) -2 -1 0 1at 1960.660 kb on + strandat 1960.676 kb on + strandat 1960.688 kb on + strand, within MPMX26_01918at 1960.742 kb on + strand, within MPMX26_01918at 1960.742 kb on + strand, within MPMX26_01918at 1960.742 kb on + strand, within MPMX26_01918at 1960.742 kb on + strand, within MPMX26_01918at 1960.864 kb on + strand, within MPMX26_01918at 1961.051 kb on + strand, within MPMX26_01918at 1961.116 kb on + strand, within MPMX26_01918at 1961.339 kb on - strandat 1961.418 kb on - strand, within MPMX26_01919at 1961.428 kb on - strand, within MPMX26_01919at 1961.485 kb on - strand, within MPMX26_01919at 1961.497 kb on - strand, within MPMX26_01919at 1961.558 kb on - strand, within MPMX26_01919at 1961.667 kb on - strand, within MPMX26_01919at 1961.667 kb on - strand, within MPMX26_01919at 1961.667 kb on - strand, within MPMX26_01919at 1961.667 kb on - strand, within MPMX26_01919at 1961.667 kb on - strand, within MPMX26_01919at 1961.667 kb on - strand, within MPMX26_01919at 1961.677 kb on - strand, within MPMX26_01919at 1961.686 kb on - strand, within MPMX26_01919at 1961.702 kb on - strand, within MPMX26_01919at 1961.707 kb on - strand, within MPMX26_01919at 1961.710 kb on - strand, within MPMX26_01919at 1961.710 kb on - strand, within MPMX26_01919at 1961.710 kb on - strand, within MPMX26_01919at 1961.710 kb on - strand, within MPMX26_01919at 1961.758 kb on - strand, within MPMX26_01919at 1961.758 kb on - strand, within MPMX26_01919at 1961.758 kb on - strand, within MPMX26_01919at 1961.758 kb on - strand, within MPMX26_01919at 1961.760 kb on - strand, within MPMX26_01919at 1961.770 kb on - strandat 1961.772 kb on - strandat 1961.908 kb on - strandat 1961.943 kb on - strandat 1962.064 kb on - strandat 1962.086 kb on - strandat 1962.112 kb on - strand, within MPMX26_01920at 1962.114 kb on - strand, within MPMX26_01920at 1962.130 kb on - strand, within MPMX26_01920at 1962.130 kb on - strand, within MPMX26_01920at 1962.185 kb on - strand, within MPMX26_01920at 1962.196 kb on - strand, within MPMX26_01920at 1962.196 kb on - strand, within MPMX26_01920at 1962.206 kb on - strand, within MPMX26_01920at 1962.206 kb on - strand, within MPMX26_01920at 1962.206 kb on - strand, within MPMX26_01920at 1962.221 kb on - strand, within MPMX26_01920

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,960,660 + +0.2
1,960,676 + +0.1
1,960,688 + MPMX26_01918 0.11 -1.3
1,960,742 + MPMX26_01918 0.20 -0.3
1,960,742 + MPMX26_01918 0.20 -0.3
1,960,742 + MPMX26_01918 0.20 -0.3
1,960,742 + MPMX26_01918 0.20 -0.4
1,960,864 + MPMX26_01918 0.40 +0.1
1,961,051 + MPMX26_01918 0.71 -0.7
1,961,116 + MPMX26_01918 0.81 +0.4
1,961,339 - -0.2
1,961,418 - MPMX26_01919 0.19 -0.2
1,961,428 - MPMX26_01919 0.21 -0.1
1,961,485 - MPMX26_01919 0.33 +0.4
1,961,497 - MPMX26_01919 0.35 +0.4
1,961,558 - MPMX26_01919 0.48 +0.0
1,961,667 - MPMX26_01919 0.70 +0.8
1,961,667 - MPMX26_01919 0.70 +0.1
1,961,667 - MPMX26_01919 0.70 +0.2
1,961,667 - MPMX26_01919 0.70 -0.8
1,961,667 - MPMX26_01919 0.70 -0.4
1,961,667 - MPMX26_01919 0.70 +0.8
1,961,677 - MPMX26_01919 0.72 -0.3
1,961,686 - MPMX26_01919 0.74 -0.3
1,961,702 - MPMX26_01919 0.77 -0.0
1,961,707 - MPMX26_01919 0.78 -0.3
1,961,710 - MPMX26_01919 0.78 +1.2
1,961,710 - MPMX26_01919 0.78 +0.0
1,961,710 - MPMX26_01919 0.78 +0.1
1,961,710 - MPMX26_01919 0.78 -0.3
1,961,758 - MPMX26_01919 0.88 +0.3
1,961,758 - MPMX26_01919 0.88 -0.1
1,961,758 - MPMX26_01919 0.88 +0.3
1,961,758 - MPMX26_01919 0.88 -0.3
1,961,760 - MPMX26_01919 0.89 +0.6
1,961,770 - +0.7
1,961,772 - +0.4
1,961,908 - -1.8
1,961,943 - -0.9
1,962,064 - -0.1
1,962,086 - +0.1
1,962,112 - MPMX26_01920 0.11 -0.5
1,962,114 - MPMX26_01920 0.11 -0.0
1,962,130 - MPMX26_01920 0.12 +0.0
1,962,130 - MPMX26_01920 0.12 -0.1
1,962,185 - MPMX26_01920 0.18 +0.5
1,962,196 - MPMX26_01920 0.19 +0.2
1,962,196 - MPMX26_01920 0.19 +0.6
1,962,206 - MPMX26_01920 0.20 -0.2
1,962,206 - MPMX26_01920 0.20 +0.5
1,962,206 - MPMX26_01920 0.20 -0.2
1,962,221 - MPMX26_01920 0.21 -0.6

Or see this region's nucleotide sequence