Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01412

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01410 and MPMX26_01411 overlap by 1 nucleotidesMPMX26_01411 and MPMX26_01412 are separated by 3 nucleotidesMPMX26_01412 and MPMX26_01413 are separated by 10 nucleotidesMPMX26_01413 and MPMX26_01414 are separated by 8 nucleotidesMPMX26_01414 and MPMX26_01415 are separated by 9 nucleotides MPMX26_01410: MPMX26_01410 - hypothetical protein, at 1,465,100 to 1,466,062 _01410 MPMX26_01411: MPMX26_01411 - hypothetical protein, at 1,466,062 to 1,466,445 _01411 MPMX26_01412: MPMX26_01412 - hypothetical protein, at 1,466,449 to 1,467,522 _01412 MPMX26_01413: MPMX26_01413 - hypothetical protein, at 1,467,533 to 1,467,883 _01413 MPMX26_01414: MPMX26_01414 - hypothetical protein, at 1,467,892 to 1,468,332 _01414 MPMX26_01415: MPMX26_01415 - hypothetical protein, at 1,468,342 to 1,468,824 _01415 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -1 0 1 2at 1465.972 kb on + strandat 1466.374 kb on + strand, within MPMX26_01411at 1466.393 kb on + strand, within MPMX26_01411at 1466.608 kb on + strand, within MPMX26_01412at 1466.749 kb on + strand, within MPMX26_01412at 1467.118 kb on + strand, within MPMX26_01412at 1467.118 kb on + strand, within MPMX26_01412at 1467.241 kb on + strand, within MPMX26_01412

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,465,972 + +0.6
1,466,374 + MPMX26_01411 0.81 +2.2
1,466,393 + MPMX26_01411 0.86 +0.5
1,466,608 + MPMX26_01412 0.15 -0.4
1,466,749 + MPMX26_01412 0.28 -0.4
1,467,118 + MPMX26_01412 0.62 -1.1
1,467,118 + MPMX26_01412 0.62 -0.0
1,467,241 + MPMX26_01412 0.74 +0.2

Or see this region's nucleotide sequence