Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01336

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01335 and MPMX26_01336 are separated by 222 nucleotidesMPMX26_01336 and MPMX26_01337 are separated by 218 nucleotidesMPMX26_01337 and MPMX26_01338 are separated by 217 nucleotides MPMX26_01335: MPMX26_01335 - Acyl-CoA dehydrogenase, at 1,409,472 to 1,410,764 _01335 MPMX26_01336: MPMX26_01336 - protein kinase UbiB, at 1,410,987 to 1,412,360 _01336 MPMX26_01337: MPMX26_01337 - hypothetical protein, at 1,412,579 to 1,412,881 _01337 MPMX26_01338: MPMX26_01338 - hypothetical protein, at 1,413,099 to 1,413,443 _01338 Position (kb) 1410 1411 1412 1413Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1410.993 kb on - strandat 1411.028 kb on - strandat 1411.047 kb on - strandat 1411.047 kb on - strandat 1411.055 kb on - strandat 1411.055 kb on - strandat 1411.055 kb on - strandat 1411.055 kb on - strandat 1411.100 kb on + strandat 1411.147 kb on - strand, within MPMX26_01336at 1411.147 kb on - strand, within MPMX26_01336at 1411.181 kb on - strand, within MPMX26_01336at 1411.181 kb on - strand, within MPMX26_01336at 1411.181 kb on - strand, within MPMX26_01336at 1411.190 kb on - strand, within MPMX26_01336at 1411.212 kb on - strand, within MPMX26_01336at 1411.316 kb on - strand, within MPMX26_01336at 1411.318 kb on + strand, within MPMX26_01336at 1411.326 kb on - strand, within MPMX26_01336at 1411.337 kb on - strand, within MPMX26_01336at 1411.344 kb on - strand, within MPMX26_01336at 1411.350 kb on + strand, within MPMX26_01336at 1411.350 kb on + strand, within MPMX26_01336at 1411.350 kb on + strand, within MPMX26_01336at 1411.358 kb on - strand, within MPMX26_01336at 1411.358 kb on - strand, within MPMX26_01336at 1411.358 kb on - strand, within MPMX26_01336at 1411.358 kb on - strand, within MPMX26_01336at 1411.358 kb on - strand, within MPMX26_01336at 1411.358 kb on - strand, within MPMX26_01336at 1411.364 kb on + strand, within MPMX26_01336at 1411.368 kb on - strand, within MPMX26_01336at 1411.376 kb on + strand, within MPMX26_01336at 1411.377 kb on - strand, within MPMX26_01336at 1411.381 kb on + strand, within MPMX26_01336at 1411.384 kb on - strand, within MPMX26_01336at 1411.384 kb on - strand, within MPMX26_01336at 1411.384 kb on - strand, within MPMX26_01336at 1411.384 kb on - strand, within MPMX26_01336at 1411.389 kb on - strand, within MPMX26_01336at 1411.389 kb on - strand, within MPMX26_01336at 1411.394 kb on - strand, within MPMX26_01336at 1411.442 kb on - strand, within MPMX26_01336at 1411.456 kb on + strand, within MPMX26_01336at 1411.456 kb on + strand, within MPMX26_01336at 1411.496 kb on - strand, within MPMX26_01336at 1411.512 kb on - strand, within MPMX26_01336at 1411.549 kb on + strand, within MPMX26_01336at 1411.549 kb on + strand, within MPMX26_01336at 1411.549 kb on + strand, within MPMX26_01336at 1411.549 kb on + strand, within MPMX26_01336at 1411.557 kb on - strand, within MPMX26_01336at 1411.557 kb on - strand, within MPMX26_01336at 1411.557 kb on - strand, within MPMX26_01336at 1411.557 kb on - strand, within MPMX26_01336at 1411.557 kb on - strand, within MPMX26_01336at 1411.587 kb on - strand, within MPMX26_01336at 1411.587 kb on - strand, within MPMX26_01336at 1411.595 kb on - strand, within MPMX26_01336at 1411.597 kb on - strand, within MPMX26_01336at 1411.602 kb on - strand, within MPMX26_01336at 1411.610 kb on - strand, within MPMX26_01336at 1411.616 kb on - strand, within MPMX26_01336at 1411.618 kb on - strand, within MPMX26_01336at 1411.618 kb on - strand, within MPMX26_01336at 1411.627 kb on - strand, within MPMX26_01336at 1411.627 kb on - strand, within MPMX26_01336at 1411.627 kb on - strand, within MPMX26_01336at 1411.627 kb on - strand, within MPMX26_01336at 1411.627 kb on - strand, within MPMX26_01336at 1411.635 kb on - strand, within MPMX26_01336at 1411.638 kb on + strand, within MPMX26_01336at 1411.640 kb on - strand, within MPMX26_01336at 1411.646 kb on - strand, within MPMX26_01336at 1411.646 kb on - strand, within MPMX26_01336at 1411.646 kb on - strand, within MPMX26_01336at 1411.693 kb on + strand, within MPMX26_01336at 1411.693 kb on + strand, within MPMX26_01336at 1411.693 kb on + strand, within MPMX26_01336at 1411.701 kb on - strand, within MPMX26_01336at 1411.701 kb on - strand, within MPMX26_01336at 1411.714 kb on - strand, within MPMX26_01336at 1411.721 kb on - strand, within MPMX26_01336at 1411.721 kb on - strand, within MPMX26_01336at 1411.728 kb on - strand, within MPMX26_01336at 1411.730 kb on + strand, within MPMX26_01336at 1411.730 kb on + strand, within MPMX26_01336at 1411.738 kb on - strand, within MPMX26_01336at 1411.738 kb on - strand, within MPMX26_01336at 1411.748 kb on - strand, within MPMX26_01336at 1411.757 kb on + strand, within MPMX26_01336at 1411.868 kb on - strand, within MPMX26_01336at 1411.874 kb on + strand, within MPMX26_01336at 1411.909 kb on - strand, within MPMX26_01336at 1411.909 kb on - strand, within MPMX26_01336at 1411.943 kb on - strand, within MPMX26_01336at 1411.943 kb on - strand, within MPMX26_01336at 1411.971 kb on - strand, within MPMX26_01336at 1411.991 kb on + strand, within MPMX26_01336at 1411.999 kb on - strand, within MPMX26_01336at 1412.040 kb on - strand, within MPMX26_01336at 1412.086 kb on - strand, within MPMX26_01336at 1412.086 kb on - strand, within MPMX26_01336at 1412.086 kb on - strand, within MPMX26_01336at 1412.100 kb on - strand, within MPMX26_01336at 1412.115 kb on - strand, within MPMX26_01336at 1412.189 kb on - strand, within MPMX26_01336at 1412.191 kb on + strand, within MPMX26_01336at 1412.263 kb on - strandat 1412.268 kb on - strandat 1412.287 kb on - strandat 1412.294 kb on - strandat 1412.354 kb on - strandat 1412.387 kb on - strandat 1412.609 kb on - strandat 1412.709 kb on - strand, within MPMX26_01337at 1412.719 kb on - strand, within MPMX26_01337at 1412.719 kb on - strand, within MPMX26_01337at 1412.719 kb on - strand, within MPMX26_01337at 1412.719 kb on - strand, within MPMX26_01337

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,410,993 - -0.0
1,411,028 - +0.4
1,411,047 - -0.6
1,411,047 - -0.4
1,411,055 - +0.2
1,411,055 - -0.6
1,411,055 - -1.1
1,411,055 - -1.2
1,411,100 + +0.3
1,411,147 - MPMX26_01336 0.12 -0.7
1,411,147 - MPMX26_01336 0.12 -1.4
1,411,181 - MPMX26_01336 0.14 -1.1
1,411,181 - MPMX26_01336 0.14 -1.0
1,411,181 - MPMX26_01336 0.14 +0.2
1,411,190 - MPMX26_01336 0.15 +0.6
1,411,212 - MPMX26_01336 0.16 -0.8
1,411,316 - MPMX26_01336 0.24 -0.2
1,411,318 + MPMX26_01336 0.24 -0.9
1,411,326 - MPMX26_01336 0.25 -0.9
1,411,337 - MPMX26_01336 0.25 -0.9
1,411,344 - MPMX26_01336 0.26 +0.1
1,411,350 + MPMX26_01336 0.26 -1.4
1,411,350 + MPMX26_01336 0.26 +1.6
1,411,350 + MPMX26_01336 0.26 +0.1
1,411,358 - MPMX26_01336 0.27 -0.1
1,411,358 - MPMX26_01336 0.27 -0.9
1,411,358 - MPMX26_01336 0.27 +0.6
1,411,358 - MPMX26_01336 0.27 -1.2
1,411,358 - MPMX26_01336 0.27 -1.4
1,411,358 - MPMX26_01336 0.27 -2.9
1,411,364 + MPMX26_01336 0.27 +0.1
1,411,368 - MPMX26_01336 0.28 -1.2
1,411,376 + MPMX26_01336 0.28 +0.1
1,411,377 - MPMX26_01336 0.28 +0.1
1,411,381 + MPMX26_01336 0.29 +0.3
1,411,384 - MPMX26_01336 0.29 -1.2
1,411,384 - MPMX26_01336 0.29 -0.6
1,411,384 - MPMX26_01336 0.29 -0.5
1,411,384 - MPMX26_01336 0.29 +0.1
1,411,389 - MPMX26_01336 0.29 -1.7
1,411,389 - MPMX26_01336 0.29 -1.6
1,411,394 - MPMX26_01336 0.30 -1.3
1,411,442 - MPMX26_01336 0.33 -0.1
1,411,456 + MPMX26_01336 0.34 -2.0
1,411,456 + MPMX26_01336 0.34 -1.2
1,411,496 - MPMX26_01336 0.37 -0.2
1,411,512 - MPMX26_01336 0.38 +0.1
1,411,549 + MPMX26_01336 0.41 -0.9
1,411,549 + MPMX26_01336 0.41 -0.7
1,411,549 + MPMX26_01336 0.41 +0.1
1,411,549 + MPMX26_01336 0.41 -0.7
1,411,557 - MPMX26_01336 0.41 -0.7
1,411,557 - MPMX26_01336 0.41 -1.7
1,411,557 - MPMX26_01336 0.41 -0.5
1,411,557 - MPMX26_01336 0.41 -1.5
1,411,557 - MPMX26_01336 0.41 -1.9
1,411,587 - MPMX26_01336 0.44 +0.1
1,411,587 - MPMX26_01336 0.44 +0.2
1,411,595 - MPMX26_01336 0.44 -1.8
1,411,597 - MPMX26_01336 0.44 -1.5
1,411,602 - MPMX26_01336 0.45 -2.4
1,411,610 - MPMX26_01336 0.45 +1.0
1,411,616 - MPMX26_01336 0.46 -0.7
1,411,618 - MPMX26_01336 0.46 -2.2
1,411,618 - MPMX26_01336 0.46 -1.4
1,411,627 - MPMX26_01336 0.47 -2.6
1,411,627 - MPMX26_01336 0.47 -1.7
1,411,627 - MPMX26_01336 0.47 -0.4
1,411,627 - MPMX26_01336 0.47 -2.1
1,411,627 - MPMX26_01336 0.47 +0.3
1,411,635 - MPMX26_01336 0.47 -1.2
1,411,638 + MPMX26_01336 0.47 -0.7
1,411,640 - MPMX26_01336 0.48 -2.7
1,411,646 - MPMX26_01336 0.48 -0.7
1,411,646 - MPMX26_01336 0.48 -0.2
1,411,646 - MPMX26_01336 0.48 +0.5
1,411,693 + MPMX26_01336 0.51 -1.4
1,411,693 + MPMX26_01336 0.51 +0.6
1,411,693 + MPMX26_01336 0.51 +0.3
1,411,701 - MPMX26_01336 0.52 -0.7
1,411,701 - MPMX26_01336 0.52 -0.0
1,411,714 - MPMX26_01336 0.53 -2.4
1,411,721 - MPMX26_01336 0.53 +0.2
1,411,721 - MPMX26_01336 0.53 -1.4
1,411,728 - MPMX26_01336 0.54 -1.6
1,411,730 + MPMX26_01336 0.54 -0.7
1,411,730 + MPMX26_01336 0.54 -0.7
1,411,738 - MPMX26_01336 0.55 -0.7
1,411,738 - MPMX26_01336 0.55 +0.1
1,411,748 - MPMX26_01336 0.55 -1.2
1,411,757 + MPMX26_01336 0.56 +0.1
1,411,868 - MPMX26_01336 0.64 -1.2
1,411,874 + MPMX26_01336 0.65 +1.4
1,411,909 - MPMX26_01336 0.67 -0.4
1,411,909 - MPMX26_01336 0.67 -0.5
1,411,943 - MPMX26_01336 0.70 -1.0
1,411,943 - MPMX26_01336 0.70 -1.1
1,411,971 - MPMX26_01336 0.72 -0.9
1,411,991 + MPMX26_01336 0.73 -0.9
1,411,999 - MPMX26_01336 0.74 -1.0
1,412,040 - MPMX26_01336 0.77 -0.8
1,412,086 - MPMX26_01336 0.80 -0.4
1,412,086 - MPMX26_01336 0.80 -1.9
1,412,086 - MPMX26_01336 0.80 -0.4
1,412,100 - MPMX26_01336 0.81 -0.4
1,412,115 - MPMX26_01336 0.82 +0.6
1,412,189 - MPMX26_01336 0.87 +0.1
1,412,191 + MPMX26_01336 0.88 +0.4
1,412,263 - -0.1
1,412,268 - -0.4
1,412,287 - -0.5
1,412,294 - -1.8
1,412,354 - -3.1
1,412,387 - -0.8
1,412,609 - -0.2
1,412,709 - MPMX26_01337 0.43 +2.6
1,412,719 - MPMX26_01337 0.46 +0.0
1,412,719 - MPMX26_01337 0.46 -0.1
1,412,719 - MPMX26_01337 0.46 +0.0
1,412,719 - MPMX26_01337 0.46 +0.3

Or see this region's nucleotide sequence