Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01320

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01319 and MPMX26_01320 are separated by 228 nucleotidesMPMX26_01320 and MPMX26_01321 are separated by 64 nucleotides MPMX26_01319: MPMX26_01319 - Transcription-repair-coupling factor, at 1,392,592 to 1,396,095 _01319 MPMX26_01320: MPMX26_01320 - hypothetical protein, at 1,396,324 to 1,396,758 _01320 MPMX26_01321: MPMX26_01321 - hypothetical protein, at 1,396,823 to 1,398,331 _01321 Position (kb) 1396 1397Strain fitness (log2 ratio) -2 -1 0 1at 1395.331 kb on + strand, within MPMX26_01319at 1395.375 kb on + strand, within MPMX26_01319at 1395.375 kb on + strand, within MPMX26_01319at 1395.375 kb on + strand, within MPMX26_01319at 1395.376 kb on + strand, within MPMX26_01319at 1395.487 kb on + strand, within MPMX26_01319at 1395.519 kb on + strand, within MPMX26_01319at 1395.519 kb on + strand, within MPMX26_01319at 1395.519 kb on + strand, within MPMX26_01319at 1395.520 kb on + strand, within MPMX26_01319at 1395.534 kb on + strand, within MPMX26_01319at 1395.612 kb on + strand, within MPMX26_01319at 1395.612 kb on + strand, within MPMX26_01319at 1395.655 kb on + strand, within MPMX26_01319at 1395.661 kb on + strand, within MPMX26_01319at 1395.688 kb on + strand, within MPMX26_01319at 1395.765 kb on + strandat 1395.817 kb on + strandat 1395.823 kb on + strandat 1395.825 kb on + strandat 1395.885 kb on + strandat 1395.921 kb on + strandat 1395.921 kb on + strandat 1395.921 kb on + strandat 1395.949 kb on + strandat 1395.994 kb on + strandat 1396.008 kb on + strandat 1396.009 kb on + strandat 1396.009 kb on + strandat 1396.014 kb on + strandat 1396.071 kb on + strandat 1396.416 kb on + strand, within MPMX26_01320at 1396.421 kb on + strand, within MPMX26_01320at 1396.421 kb on + strand, within MPMX26_01320at 1396.421 kb on + strand, within MPMX26_01320at 1396.437 kb on + strand, within MPMX26_01320at 1396.470 kb on + strand, within MPMX26_01320at 1396.470 kb on + strand, within MPMX26_01320at 1396.536 kb on + strand, within MPMX26_01320at 1396.536 kb on + strand, within MPMX26_01320at 1396.536 kb on + strand, within MPMX26_01320at 1396.564 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.632 kb on + strand, within MPMX26_01320at 1396.642 kb on + strand, within MPMX26_01320at 1396.642 kb on + strand, within MPMX26_01320at 1396.642 kb on + strand, within MPMX26_01320at 1396.642 kb on + strand, within MPMX26_01320at 1396.647 kb on + strand, within MPMX26_01320at 1396.657 kb on + strand, within MPMX26_01320at 1396.657 kb on + strand, within MPMX26_01320at 1396.657 kb on + strand, within MPMX26_01320at 1396.657 kb on + strand, within MPMX26_01320at 1396.662 kb on + strand, within MPMX26_01320at 1396.684 kb on + strand, within MPMX26_01320at 1396.692 kb on + strand, within MPMX26_01320at 1396.700 kb on + strand, within MPMX26_01320at 1396.700 kb on + strand, within MPMX26_01320at 1396.715 kb on + strandat 1396.725 kb on + strandat 1396.725 kb on + strandat 1396.725 kb on + strandat 1396.727 kb on + strandat 1396.771 kb on + strandat 1396.771 kb on + strandat 1396.771 kb on + strandat 1396.771 kb on + strandat 1396.771 kb on + strandat 1396.771 kb on + strandat 1396.771 kb on + strandat 1396.771 kb on + strandat 1396.806 kb on + strandat 1396.815 kb on + strandat 1396.815 kb on + strandat 1396.815 kb on + strandat 1396.826 kb on + strandat 1396.849 kb on + strandat 1396.895 kb on + strandat 1396.903 kb on + strandat 1396.903 kb on + strandat 1396.903 kb on + strandat 1396.903 kb on + strandat 1396.903 kb on + strandat 1396.903 kb on + strandat 1396.937 kb on + strandat 1396.937 kb on + strandat 1397.013 kb on + strand, within MPMX26_01321at 1397.013 kb on + strand, within MPMX26_01321at 1397.099 kb on + strand, within MPMX26_01321at 1397.435 kb on + strand, within MPMX26_01321

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,395,331 + MPMX26_01319 0.78 -0.6
1,395,375 + MPMX26_01319 0.79 +0.7
1,395,375 + MPMX26_01319 0.79 +1.7
1,395,375 + MPMX26_01319 0.79 -0.3
1,395,376 + MPMX26_01319 0.79 -0.0
1,395,487 + MPMX26_01319 0.83 -1.2
1,395,519 + MPMX26_01319 0.84 +0.8
1,395,519 + MPMX26_01319 0.84 -1.0
1,395,519 + MPMX26_01319 0.84 -0.5
1,395,520 + MPMX26_01319 0.84 -0.9
1,395,534 + MPMX26_01319 0.84 -0.4
1,395,612 + MPMX26_01319 0.86 -0.4
1,395,612 + MPMX26_01319 0.86 -0.3
1,395,655 + MPMX26_01319 0.87 -0.7
1,395,661 + MPMX26_01319 0.88 -0.1
1,395,688 + MPMX26_01319 0.88 +0.1
1,395,765 + +0.2
1,395,817 + -0.1
1,395,823 + -0.7
1,395,825 + -0.5
1,395,885 + -0.1
1,395,921 + +0.5
1,395,921 + -0.8
1,395,921 + -0.4
1,395,949 + -0.2
1,395,994 + -0.7
1,396,008 + +0.2
1,396,009 + -0.5
1,396,009 + -0.4
1,396,014 + +0.3
1,396,071 + -0.7
1,396,416 + MPMX26_01320 0.21 -0.4
1,396,421 + MPMX26_01320 0.22 -1.7
1,396,421 + MPMX26_01320 0.22 -2.3
1,396,421 + MPMX26_01320 0.22 -1.2
1,396,437 + MPMX26_01320 0.26 +0.2
1,396,470 + MPMX26_01320 0.34 -1.5
1,396,470 + MPMX26_01320 0.34 -1.0
1,396,536 + MPMX26_01320 0.49 -0.5
1,396,536 + MPMX26_01320 0.49 -1.7
1,396,536 + MPMX26_01320 0.49 -0.7
1,396,564 + MPMX26_01320 0.55 -0.3
1,396,632 + MPMX26_01320 0.71 -1.2
1,396,632 + MPMX26_01320 0.71 -0.2
1,396,632 + MPMX26_01320 0.71 -2.0
1,396,632 + MPMX26_01320 0.71 -0.6
1,396,632 + MPMX26_01320 0.71 -1.8
1,396,632 + MPMX26_01320 0.71 -0.7
1,396,632 + MPMX26_01320 0.71 -0.9
1,396,632 + MPMX26_01320 0.71 -0.8
1,396,632 + MPMX26_01320 0.71 -0.9
1,396,632 + MPMX26_01320 0.71 -0.5
1,396,632 + MPMX26_01320 0.71 -1.8
1,396,632 + MPMX26_01320 0.71 -1.1
1,396,632 + MPMX26_01320 0.71 -1.2
1,396,632 + MPMX26_01320 0.71 -1.8
1,396,632 + MPMX26_01320 0.71 -1.3
1,396,632 + MPMX26_01320 0.71 -1.3
1,396,632 + MPMX26_01320 0.71 +0.3
1,396,632 + MPMX26_01320 0.71 -0.3
1,396,632 + MPMX26_01320 0.71 -0.2
1,396,632 + MPMX26_01320 0.71 -2.5
1,396,632 + MPMX26_01320 0.71 -0.8
1,396,642 + MPMX26_01320 0.73 -0.7
1,396,642 + MPMX26_01320 0.73 +0.1
1,396,642 + MPMX26_01320 0.73 -1.1
1,396,642 + MPMX26_01320 0.73 -1.7
1,396,647 + MPMX26_01320 0.74 -1.3
1,396,657 + MPMX26_01320 0.77 -1.7
1,396,657 + MPMX26_01320 0.77 -0.5
1,396,657 + MPMX26_01320 0.77 -1.3
1,396,657 + MPMX26_01320 0.77 -0.9
1,396,662 + MPMX26_01320 0.78 -1.2
1,396,684 + MPMX26_01320 0.83 +0.3
1,396,692 + MPMX26_01320 0.85 -2.2
1,396,700 + MPMX26_01320 0.86 -1.0
1,396,700 + MPMX26_01320 0.86 +0.1
1,396,715 + -1.4
1,396,725 + -0.2
1,396,725 + -0.9
1,396,725 + -0.3
1,396,727 + -0.7
1,396,771 + -0.1
1,396,771 + +0.2
1,396,771 + +0.3
1,396,771 + +0.1
1,396,771 + -0.9
1,396,771 + +1.7
1,396,771 + -0.0
1,396,771 + -0.2
1,396,806 + +0.6
1,396,815 + -0.3
1,396,815 + +1.4
1,396,815 + -0.4
1,396,826 + -0.8
1,396,849 + +0.6
1,396,895 + -0.1
1,396,903 + -0.1
1,396,903 + -0.5
1,396,903 + +0.3
1,396,903 + -0.1
1,396,903 + +0.1
1,396,903 + -0.6
1,396,937 + -0.3
1,396,937 + -0.5
1,397,013 + MPMX26_01321 0.13 +0.4
1,397,013 + MPMX26_01321 0.13 -0.3
1,397,099 + MPMX26_01321 0.18 +0.5
1,397,435 + MPMX26_01321 0.41 +0.2

Or see this region's nucleotide sequence