Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01308

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01306 and MPMX26_01307 are separated by 444 nucleotidesMPMX26_01307 and MPMX26_01308 are separated by 53 nucleotidesMPMX26_01308 and MPMX26_01309 are separated by 148 nucleotidesMPMX26_01309 and MPMX26_01310 overlap by 17 nucleotides MPMX26_01306: MPMX26_01306 - Cell division coordinator CpoB, at 1,382,788 to 1,383,612 _01306 MPMX26_01307: MPMX26_01307 - Regulatory protein RecX, at 1,384,057 to 1,384,542 _01307 MPMX26_01308: MPMX26_01308 - Protein RecA, at 1,384,596 to 1,385,642 _01308 MPMX26_01309: MPMX26_01309 - Heat shock protein 15, at 1,385,791 to 1,386,231 _01309 MPMX26_01310: MPMX26_01310 - GMP/IMP nucleotidase YrfG, at 1,386,215 to 1,386,901 _01310 Position (kb) 1384 1385 1386Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1384.054 kb on + strandat 1384.054 kb on + strandat 1384.137 kb on + strand, within MPMX26_01307at 1384.619 kb on - strandat 1384.668 kb on - strandat 1384.668 kb on - strandat 1384.668 kb on - strandat 1384.668 kb on - strandat 1384.668 kb on - strandat 1384.668 kb on - strandat 1384.683 kb on - strandat 1384.745 kb on - strand, within MPMX26_01308at 1384.902 kb on - strand, within MPMX26_01308at 1384.956 kb on - strand, within MPMX26_01308at 1384.956 kb on - strand, within MPMX26_01308at 1385.025 kb on - strand, within MPMX26_01308at 1385.088 kb on - strand, within MPMX26_01308at 1385.121 kb on - strand, within MPMX26_01308at 1385.131 kb on - strand, within MPMX26_01308at 1385.131 kb on - strand, within MPMX26_01308at 1385.204 kb on - strand, within MPMX26_01308at 1385.204 kb on - strand, within MPMX26_01308at 1385.204 kb on - strand, within MPMX26_01308at 1385.244 kb on - strand, within MPMX26_01308at 1385.333 kb on - strand, within MPMX26_01308at 1385.400 kb on - strand, within MPMX26_01308at 1385.435 kb on - strand, within MPMX26_01308at 1385.435 kb on - strand, within MPMX26_01308at 1385.454 kb on - strand, within MPMX26_01308at 1385.528 kb on - strand, within MPMX26_01308at 1385.815 kb on - strandat 1385.979 kb on - strand, within MPMX26_01309at 1386.042 kb on - strand, within MPMX26_01309at 1386.042 kb on - strand, within MPMX26_01309at 1386.042 kb on - strand, within MPMX26_01309at 1386.060 kb on - strand, within MPMX26_01309at 1386.130 kb on - strand, within MPMX26_01309at 1386.178 kb on - strand, within MPMX26_01309at 1386.178 kb on - strand, within MPMX26_01309at 1386.178 kb on - strand, within MPMX26_01309at 1386.178 kb on - strand, within MPMX26_01309

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,384,054 + -0.5
1,384,054 + +0.3
1,384,137 + MPMX26_01307 0.16 -0.7
1,384,619 - +0.3
1,384,668 - +0.3
1,384,668 - -0.3
1,384,668 - -0.5
1,384,668 - +0.2
1,384,668 - +0.3
1,384,668 - -1.0
1,384,683 - -0.0
1,384,745 - MPMX26_01308 0.14 -1.4
1,384,902 - MPMX26_01308 0.29 +0.1
1,384,956 - MPMX26_01308 0.34 +0.1
1,384,956 - MPMX26_01308 0.34 -1.5
1,385,025 - MPMX26_01308 0.41 -2.3
1,385,088 - MPMX26_01308 0.47 +0.1
1,385,121 - MPMX26_01308 0.50 -0.9
1,385,131 - MPMX26_01308 0.51 -0.7
1,385,131 - MPMX26_01308 0.51 -2.8
1,385,204 - MPMX26_01308 0.58 -1.2
1,385,204 - MPMX26_01308 0.58 -0.9
1,385,204 - MPMX26_01308 0.58 -0.9
1,385,244 - MPMX26_01308 0.62 -0.2
1,385,333 - MPMX26_01308 0.70 +2.0
1,385,400 - MPMX26_01308 0.77 -0.4
1,385,435 - MPMX26_01308 0.80 -1.2
1,385,435 - MPMX26_01308 0.80 -0.4
1,385,454 - MPMX26_01308 0.82 +0.6
1,385,528 - MPMX26_01308 0.89 -0.4
1,385,815 - +0.8
1,385,979 - MPMX26_01309 0.43 -0.7
1,386,042 - MPMX26_01309 0.57 +0.2
1,386,042 - MPMX26_01309 0.57 +0.0
1,386,042 - MPMX26_01309 0.57 +1.2
1,386,060 - MPMX26_01309 0.61 -0.5
1,386,130 - MPMX26_01309 0.77 -0.8
1,386,178 - MPMX26_01309 0.88 -0.2
1,386,178 - MPMX26_01309 0.88 -0.6
1,386,178 - MPMX26_01309 0.88 -2.1
1,386,178 - MPMX26_01309 0.88 +0.7

Or see this region's nucleotide sequence