Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01300

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01299 and MPMX26_01300 overlap by 1 nucleotidesMPMX26_01300 and MPMX26_01301 are separated by 24 nucleotides MPMX26_01299: MPMX26_01299 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,374,727 to 1,375,923 _01299 MPMX26_01300: MPMX26_01300 - Regulator of sigma-E protease RseP, at 1,375,923 to 1,377,281 _01300 MPMX26_01301: MPMX26_01301 - Outer membrane protein assembly factor BamA, at 1,377,306 to 1,379,810 _01301 Position (kb) 1375 1376 1377 1378Strain fitness (log2 ratio) -3 -2 -1 0 1at 1375.937 kb on + strandat 1375.953 kb on + strandat 1376.011 kb on + strandat 1376.056 kb on + strandat 1376.056 kb on + strandat 1376.056 kb on + strandat 1376.056 kb on + strandat 1376.056 kb on + strandat 1376.061 kb on + strand, within MPMX26_01300at 1376.061 kb on + strand, within MPMX26_01300at 1376.061 kb on + strand, within MPMX26_01300at 1376.105 kb on + strand, within MPMX26_01300at 1376.105 kb on + strand, within MPMX26_01300at 1376.105 kb on + strand, within MPMX26_01300at 1376.112 kb on + strand, within MPMX26_01300at 1376.144 kb on + strand, within MPMX26_01300at 1376.169 kb on + strand, within MPMX26_01300at 1376.205 kb on + strand, within MPMX26_01300at 1376.260 kb on + strand, within MPMX26_01300at 1376.270 kb on + strand, within MPMX26_01300at 1376.303 kb on + strand, within MPMX26_01300at 1376.342 kb on + strand, within MPMX26_01300at 1376.358 kb on + strand, within MPMX26_01300at 1376.390 kb on + strand, within MPMX26_01300at 1376.397 kb on + strand, within MPMX26_01300at 1376.397 kb on + strand, within MPMX26_01300at 1376.397 kb on + strand, within MPMX26_01300at 1376.399 kb on + strand, within MPMX26_01300at 1376.430 kb on + strand, within MPMX26_01300at 1376.430 kb on + strand, within MPMX26_01300at 1376.430 kb on + strand, within MPMX26_01300at 1376.430 kb on + strand, within MPMX26_01300at 1376.435 kb on + strand, within MPMX26_01300at 1376.445 kb on + strand, within MPMX26_01300at 1376.582 kb on + strand, within MPMX26_01300at 1376.689 kb on + strand, within MPMX26_01300at 1376.745 kb on + strand, within MPMX26_01300at 1376.789 kb on + strand, within MPMX26_01300at 1376.820 kb on + strand, within MPMX26_01300at 1376.825 kb on + strand, within MPMX26_01300at 1376.832 kb on + strand, within MPMX26_01300at 1376.888 kb on + strand, within MPMX26_01300at 1376.888 kb on + strand, within MPMX26_01300at 1376.903 kb on + strand, within MPMX26_01300at 1376.904 kb on + strand, within MPMX26_01300at 1376.904 kb on + strand, within MPMX26_01300at 1376.904 kb on + strand, within MPMX26_01300at 1376.912 kb on + strand, within MPMX26_01300at 1376.921 kb on + strand, within MPMX26_01300at 1376.921 kb on + strand, within MPMX26_01300at 1376.921 kb on + strand, within MPMX26_01300at 1377.033 kb on + strand, within MPMX26_01300at 1377.078 kb on + strand, within MPMX26_01300at 1377.088 kb on + strand, within MPMX26_01300at 1377.088 kb on + strand, within MPMX26_01300at 1377.088 kb on + strand, within MPMX26_01300at 1377.088 kb on + strand, within MPMX26_01300at 1377.225 kb on + strandat 1377.230 kb on + strandat 1377.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,375,937 + +0.1
1,375,953 + -1.3
1,376,011 + -2.2
1,376,056 + -0.7
1,376,056 + +0.1
1,376,056 + -0.8
1,376,056 + +0.3
1,376,056 + -0.7
1,376,061 + MPMX26_01300 0.10 -0.3
1,376,061 + MPMX26_01300 0.10 -0.9
1,376,061 + MPMX26_01300 0.10 +1.4
1,376,105 + MPMX26_01300 0.13 -2.8
1,376,105 + MPMX26_01300 0.13 -0.3
1,376,105 + MPMX26_01300 0.13 -0.8
1,376,112 + MPMX26_01300 0.14 -2.0
1,376,144 + MPMX26_01300 0.16 +1.7
1,376,169 + MPMX26_01300 0.18 -1.4
1,376,205 + MPMX26_01300 0.21 -1.4
1,376,260 + MPMX26_01300 0.25 -1.5
1,376,270 + MPMX26_01300 0.26 -2.8
1,376,303 + MPMX26_01300 0.28 +0.1
1,376,342 + MPMX26_01300 0.31 -2.2
1,376,358 + MPMX26_01300 0.32 -2.0
1,376,390 + MPMX26_01300 0.34 -0.5
1,376,397 + MPMX26_01300 0.35 -0.9
1,376,397 + MPMX26_01300 0.35 -1.7
1,376,397 + MPMX26_01300 0.35 -0.8
1,376,399 + MPMX26_01300 0.35 -2.0
1,376,430 + MPMX26_01300 0.37 +0.1
1,376,430 + MPMX26_01300 0.37 -2.9
1,376,430 + MPMX26_01300 0.37 -0.9
1,376,430 + MPMX26_01300 0.37 -3.7
1,376,435 + MPMX26_01300 0.38 -1.3
1,376,445 + MPMX26_01300 0.38 -1.5
1,376,582 + MPMX26_01300 0.48 -1.3
1,376,689 + MPMX26_01300 0.56 -1.7
1,376,745 + MPMX26_01300 0.60 -1.9
1,376,789 + MPMX26_01300 0.64 -0.8
1,376,820 + MPMX26_01300 0.66 -1.1
1,376,825 + MPMX26_01300 0.66 -0.8
1,376,832 + MPMX26_01300 0.67 -1.4
1,376,888 + MPMX26_01300 0.71 -0.5
1,376,888 + MPMX26_01300 0.71 -1.2
1,376,903 + MPMX26_01300 0.72 -1.7
1,376,904 + MPMX26_01300 0.72 -1.9
1,376,904 + MPMX26_01300 0.72 -1.3
1,376,904 + MPMX26_01300 0.72 -1.7
1,376,912 + MPMX26_01300 0.73 -0.8
1,376,921 + MPMX26_01300 0.73 +0.1
1,376,921 + MPMX26_01300 0.73 -1.3
1,376,921 + MPMX26_01300 0.73 +0.2
1,377,033 + MPMX26_01300 0.82 -0.7
1,377,078 + MPMX26_01300 0.85 -1.4
1,377,088 + MPMX26_01300 0.86 -1.9
1,377,088 + MPMX26_01300 0.86 -0.3
1,377,088 + MPMX26_01300 0.86 +0.1
1,377,088 + MPMX26_01300 0.86 +0.1
1,377,225 + -0.4
1,377,230 + -0.2
1,377,235 + -0.3

Or see this region's nucleotide sequence