Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01175

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01174 and MPMX26_01175 overlap by 1 nucleotidesMPMX26_01175 and MPMX26_01176 are separated by 218 nucleotides MPMX26_01174: MPMX26_01174 - Peptide chain release factor RF1, at 1,241,324 to 1,242,412 _01174 MPMX26_01175: MPMX26_01175 - Release factor glutamine methyltransferase, at 1,242,412 to 1,243,236 _01175 MPMX26_01176: MPMX26_01176 - hypothetical protein, at 1,243,455 to 1,244,480 _01176 Position (kb) 1242 1243 1244Strain fitness (log2 ratio) -3 -2 -1 0 1at 1242.365 kb on + strandat 1242.374 kb on + strandat 1242.426 kb on + strandat 1242.436 kb on + strandat 1242.436 kb on + strandat 1242.436 kb on + strandat 1242.441 kb on + strandat 1242.441 kb on + strandat 1242.441 kb on + strandat 1242.441 kb on + strandat 1242.443 kb on + strandat 1242.445 kb on + strandat 1242.445 kb on + strandat 1242.455 kb on + strandat 1242.455 kb on + strandat 1242.455 kb on + strandat 1242.455 kb on + strandat 1242.455 kb on + strandat 1242.463 kb on - strandat 1242.562 kb on + strand, within MPMX26_01175at 1242.574 kb on + strand, within MPMX26_01175at 1242.648 kb on + strand, within MPMX26_01175at 1242.665 kb on + strand, within MPMX26_01175at 1242.706 kb on + strand, within MPMX26_01175at 1242.745 kb on + strand, within MPMX26_01175at 1242.755 kb on + strand, within MPMX26_01175at 1242.755 kb on + strand, within MPMX26_01175at 1242.758 kb on + strand, within MPMX26_01175at 1242.808 kb on + strand, within MPMX26_01175at 1242.808 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.836 kb on + strand, within MPMX26_01175at 1242.862 kb on + strand, within MPMX26_01175at 1242.997 kb on + strand, within MPMX26_01175at 1243.032 kb on + strand, within MPMX26_01175at 1243.037 kb on + strand, within MPMX26_01175at 1243.074 kb on + strand, within MPMX26_01175at 1243.074 kb on + strand, within MPMX26_01175at 1243.074 kb on + strand, within MPMX26_01175at 1243.074 kb on + strand, within MPMX26_01175at 1243.074 kb on + strand, within MPMX26_01175at 1243.074 kb on + strand, within MPMX26_01175at 1243.074 kb on + strand, within MPMX26_01175at 1243.099 kb on + strand, within MPMX26_01175at 1243.103 kb on + strand, within MPMX26_01175at 1243.108 kb on + strand, within MPMX26_01175at 1243.121 kb on + strand, within MPMX26_01175at 1243.121 kb on + strand, within MPMX26_01175at 1243.159 kb on + strandat 1243.207 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,242,365 + +0.9
1,242,374 + -0.3
1,242,426 + -1.8
1,242,436 + +1.1
1,242,436 + +0.9
1,242,436 + -0.3
1,242,441 + -1.3
1,242,441 + -2.0
1,242,441 + -1.1
1,242,441 + -1.2
1,242,443 + -0.3
1,242,445 + -2.0
1,242,445 + -1.5
1,242,455 + +0.1
1,242,455 + -1.8
1,242,455 + -1.8
1,242,455 + -1.7
1,242,455 + -1.1
1,242,463 - -0.1
1,242,562 + MPMX26_01175 0.18 -0.3
1,242,574 + MPMX26_01175 0.20 -0.4
1,242,648 + MPMX26_01175 0.29 +0.1
1,242,665 + MPMX26_01175 0.31 -1.9
1,242,706 + MPMX26_01175 0.36 -3.2
1,242,745 + MPMX26_01175 0.40 -1.3
1,242,755 + MPMX26_01175 0.42 -1.3
1,242,755 + MPMX26_01175 0.42 -2.0
1,242,758 + MPMX26_01175 0.42 +0.3
1,242,808 + MPMX26_01175 0.48 -1.9
1,242,808 + MPMX26_01175 0.48 -1.8
1,242,836 + MPMX26_01175 0.51 -0.2
1,242,836 + MPMX26_01175 0.51 -1.7
1,242,836 + MPMX26_01175 0.51 +0.1
1,242,836 + MPMX26_01175 0.51 -0.6
1,242,836 + MPMX26_01175 0.51 -0.9
1,242,836 + MPMX26_01175 0.51 +0.2
1,242,836 + MPMX26_01175 0.51 -0.7
1,242,836 + MPMX26_01175 0.51 -0.7
1,242,836 + MPMX26_01175 0.51 -0.9
1,242,836 + MPMX26_01175 0.51 -0.9
1,242,836 + MPMX26_01175 0.51 -1.3
1,242,836 + MPMX26_01175 0.51 -1.1
1,242,836 + MPMX26_01175 0.51 -0.7
1,242,862 + MPMX26_01175 0.55 -0.3
1,242,997 + MPMX26_01175 0.71 -1.1
1,243,032 + MPMX26_01175 0.75 -1.5
1,243,037 + MPMX26_01175 0.76 -1.3
1,243,074 + MPMX26_01175 0.80 -0.9
1,243,074 + MPMX26_01175 0.80 +0.7
1,243,074 + MPMX26_01175 0.80 -1.7
1,243,074 + MPMX26_01175 0.80 -0.7
1,243,074 + MPMX26_01175 0.80 -0.7
1,243,074 + MPMX26_01175 0.80 -1.1
1,243,074 + MPMX26_01175 0.80 +0.4
1,243,099 + MPMX26_01175 0.83 -1.5
1,243,103 + MPMX26_01175 0.84 -0.7
1,243,108 + MPMX26_01175 0.84 +0.1
1,243,121 + MPMX26_01175 0.86 +0.5
1,243,121 + MPMX26_01175 0.86 +1.1
1,243,159 + -0.7
1,243,207 + -0.9

Or see this region's nucleotide sequence