Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01112

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01110 and MPMX26_01111 are separated by 134 nucleotidesMPMX26_01111 and MPMX26_01112 are separated by 387 nucleotidesMPMX26_01112 and MPMX26_01113 are separated by 101 nucleotides MPMX26_01110: MPMX26_01110 - RNA polymerase sigma factor RpoH, at 1,181,029 to 1,181,898 _01110 MPMX26_01111: MPMX26_01111 - Sulfur carrier protein TusA, at 1,182,033 to 1,182,272 _01111 MPMX26_01112: MPMX26_01112 - Major cold shock protein CspA, at 1,182,660 to 1,182,872 _01112 MPMX26_01113: MPMX26_01113 - ATP-dependent RNA helicase RhlB, at 1,182,974 to 1,184,125 _01113 Position (kb) 1182 1183Strain fitness (log2 ratio) -2 -1 0 1at 1182.009 kb on - strandat 1182.088 kb on - strand, within MPMX26_01111at 1182.093 kb on - strand, within MPMX26_01111at 1182.118 kb on - strand, within MPMX26_01111at 1182.175 kb on - strand, within MPMX26_01111at 1182.219 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.222 kb on - strand, within MPMX26_01111at 1182.227 kb on - strand, within MPMX26_01111at 1182.227 kb on - strand, within MPMX26_01111at 1182.227 kb on - strand, within MPMX26_01111at 1182.227 kb on - strand, within MPMX26_01111at 1182.262 kb on - strandat 1182.270 kb on - strandat 1182.447 kb on + strandat 1182.481 kb on + strandat 1182.598 kb on + strandat 1182.611 kb on + strandat 1182.611 kb on + strandat 1182.611 kb on + strandat 1182.611 kb on + strandat 1182.611 kb on + strandat 1182.650 kb on + strandat 1182.667 kb on + strandat 1182.672 kb on + strandat 1182.700 kb on + strand, within MPMX26_01112at 1182.725 kb on + strand, within MPMX26_01112at 1182.725 kb on + strand, within MPMX26_01112at 1182.725 kb on + strand, within MPMX26_01112at 1182.725 kb on + strand, within MPMX26_01112at 1182.789 kb on + strand, within MPMX26_01112at 1182.855 kb on + strandat 1182.862 kb on + strandat 1182.969 kb on + strandat 1183.038 kb on + strandat 1183.070 kb on + strandat 1183.117 kb on + strand, within MPMX26_01113at 1183.117 kb on + strand, within MPMX26_01113at 1183.126 kb on + strand, within MPMX26_01113at 1183.147 kb on + strand, within MPMX26_01113at 1183.152 kb on + strand, within MPMX26_01113at 1183.187 kb on + strand, within MPMX26_01113at 1183.192 kb on + strand, within MPMX26_01113at 1183.197 kb on + strand, within MPMX26_01113at 1183.214 kb on + strand, within MPMX26_01113at 1183.214 kb on + strand, within MPMX26_01113at 1183.214 kb on + strand, within MPMX26_01113at 1183.215 kb on + strand, within MPMX26_01113at 1183.233 kb on + strand, within MPMX26_01113at 1183.233 kb on + strand, within MPMX26_01113at 1183.265 kb on + strand, within MPMX26_01113at 1183.265 kb on + strand, within MPMX26_01113at 1183.289 kb on + strand, within MPMX26_01113at 1183.289 kb on + strand, within MPMX26_01113at 1183.289 kb on + strand, within MPMX26_01113at 1183.309 kb on + strand, within MPMX26_01113at 1183.314 kb on + strand, within MPMX26_01113at 1183.380 kb on + strand, within MPMX26_01113at 1183.380 kb on + strand, within MPMX26_01113at 1183.380 kb on + strand, within MPMX26_01113at 1183.422 kb on + strand, within MPMX26_01113at 1183.500 kb on + strand, within MPMX26_01113at 1183.500 kb on + strand, within MPMX26_01113at 1183.510 kb on + strand, within MPMX26_01113at 1183.510 kb on + strand, within MPMX26_01113at 1183.546 kb on + strand, within MPMX26_01113at 1183.571 kb on + strand, within MPMX26_01113at 1183.576 kb on + strand, within MPMX26_01113at 1183.576 kb on + strand, within MPMX26_01113at 1183.586 kb on + strand, within MPMX26_01113at 1183.647 kb on + strand, within MPMX26_01113at 1183.649 kb on + strand, within MPMX26_01113at 1183.658 kb on + strand, within MPMX26_01113at 1183.658 kb on + strand, within MPMX26_01113at 1183.661 kb on + strand, within MPMX26_01113at 1183.661 kb on + strand, within MPMX26_01113at 1183.661 kb on + strand, within MPMX26_01113at 1183.663 kb on + strand, within MPMX26_01113at 1183.686 kb on + strand, within MPMX26_01113at 1183.686 kb on + strand, within MPMX26_01113at 1183.686 kb on + strand, within MPMX26_01113at 1183.686 kb on + strand, within MPMX26_01113at 1183.732 kb on + strand, within MPMX26_01113at 1183.770 kb on + strand, within MPMX26_01113at 1183.772 kb on + strand, within MPMX26_01113at 1183.772 kb on + strand, within MPMX26_01113at 1183.772 kb on + strand, within MPMX26_01113at 1183.772 kb on + strand, within MPMX26_01113at 1183.772 kb on + strand, within MPMX26_01113at 1183.772 kb on + strand, within MPMX26_01113at 1183.834 kb on + strand, within MPMX26_01113

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,182,009 - -0.1
1,182,088 - MPMX26_01111 0.23 +0.0
1,182,093 - MPMX26_01111 0.25 -1.3
1,182,118 - MPMX26_01111 0.35 +1.1
1,182,175 - MPMX26_01111 0.59 +1.0
1,182,219 - MPMX26_01111 0.78 -0.0
1,182,222 - MPMX26_01111 0.79 +0.2
1,182,222 - MPMX26_01111 0.79 -0.4
1,182,222 - MPMX26_01111 0.79 +0.0
1,182,222 - MPMX26_01111 0.79 -0.0
1,182,222 - MPMX26_01111 0.79 +0.5
1,182,222 - MPMX26_01111 0.79 -0.9
1,182,222 - MPMX26_01111 0.79 +0.0
1,182,222 - MPMX26_01111 0.79 +0.6
1,182,222 - MPMX26_01111 0.79 -0.1
1,182,222 - MPMX26_01111 0.79 +0.5
1,182,222 - MPMX26_01111 0.79 -0.6
1,182,222 - MPMX26_01111 0.79 +0.1
1,182,222 - MPMX26_01111 0.79 +0.1
1,182,222 - MPMX26_01111 0.79 +0.6
1,182,222 - MPMX26_01111 0.79 -0.3
1,182,222 - MPMX26_01111 0.79 -0.1
1,182,222 - MPMX26_01111 0.79 -0.1
1,182,227 - MPMX26_01111 0.81 -0.1
1,182,227 - MPMX26_01111 0.81 -0.2
1,182,227 - MPMX26_01111 0.81 -0.4
1,182,227 - MPMX26_01111 0.81 +0.3
1,182,262 - +0.5
1,182,270 - +0.1
1,182,447 + -2.3
1,182,481 + -0.2
1,182,598 + -0.8
1,182,611 + -0.6
1,182,611 + -0.4
1,182,611 + -1.1
1,182,611 + -0.2
1,182,611 + -1.6
1,182,650 + -1.2
1,182,667 + -1.5
1,182,672 + -1.4
1,182,700 + MPMX26_01112 0.19 -1.1
1,182,725 + MPMX26_01112 0.31 -0.9
1,182,725 + MPMX26_01112 0.31 -1.1
1,182,725 + MPMX26_01112 0.31 -0.9
1,182,725 + MPMX26_01112 0.31 -1.0
1,182,789 + MPMX26_01112 0.61 -0.8
1,182,855 + -1.3
1,182,862 + +0.2
1,182,969 + +0.6
1,183,038 + -0.5
1,183,070 + -0.2
1,183,117 + MPMX26_01113 0.12 +0.8
1,183,117 + MPMX26_01113 0.12 +0.0
1,183,126 + MPMX26_01113 0.13 -0.5
1,183,147 + MPMX26_01113 0.15 +0.1
1,183,152 + MPMX26_01113 0.15 +0.1
1,183,187 + MPMX26_01113 0.18 -0.2
1,183,192 + MPMX26_01113 0.19 +0.3
1,183,197 + MPMX26_01113 0.19 -0.1
1,183,214 + MPMX26_01113 0.21 -0.5
1,183,214 + MPMX26_01113 0.21 +0.0
1,183,214 + MPMX26_01113 0.21 -0.1
1,183,215 + MPMX26_01113 0.21 -0.0
1,183,233 + MPMX26_01113 0.22 -0.9
1,183,233 + MPMX26_01113 0.22 +0.1
1,183,265 + MPMX26_01113 0.25 -0.7
1,183,265 + MPMX26_01113 0.25 -0.1
1,183,289 + MPMX26_01113 0.27 -0.2
1,183,289 + MPMX26_01113 0.27 +0.3
1,183,289 + MPMX26_01113 0.27 -0.2
1,183,309 + MPMX26_01113 0.29 -1.1
1,183,314 + MPMX26_01113 0.30 +0.2
1,183,380 + MPMX26_01113 0.35 -0.0
1,183,380 + MPMX26_01113 0.35 +0.0
1,183,380 + MPMX26_01113 0.35 +0.0
1,183,422 + MPMX26_01113 0.39 +0.4
1,183,500 + MPMX26_01113 0.46 -0.1
1,183,500 + MPMX26_01113 0.46 +0.0
1,183,510 + MPMX26_01113 0.47 +0.2
1,183,510 + MPMX26_01113 0.47 +0.0
1,183,546 + MPMX26_01113 0.50 +0.1
1,183,571 + MPMX26_01113 0.52 -0.1
1,183,576 + MPMX26_01113 0.52 +0.3
1,183,576 + MPMX26_01113 0.52 +0.1
1,183,586 + MPMX26_01113 0.53 +0.2
1,183,647 + MPMX26_01113 0.58 +0.1
1,183,649 + MPMX26_01113 0.59 -1.2
1,183,658 + MPMX26_01113 0.59 -0.4
1,183,658 + MPMX26_01113 0.59 +0.0
1,183,661 + MPMX26_01113 0.60 +0.1
1,183,661 + MPMX26_01113 0.60 -0.7
1,183,661 + MPMX26_01113 0.60 +0.1
1,183,663 + MPMX26_01113 0.60 -0.1
1,183,686 + MPMX26_01113 0.62 -0.3
1,183,686 + MPMX26_01113 0.62 -0.2
1,183,686 + MPMX26_01113 0.62 +0.0
1,183,686 + MPMX26_01113 0.62 +0.1
1,183,732 + MPMX26_01113 0.66 -0.0
1,183,770 + MPMX26_01113 0.69 -0.4
1,183,772 + MPMX26_01113 0.69 +0.2
1,183,772 + MPMX26_01113 0.69 +0.1
1,183,772 + MPMX26_01113 0.69 -0.1
1,183,772 + MPMX26_01113 0.69 -0.3
1,183,772 + MPMX26_01113 0.69 +0.2
1,183,772 + MPMX26_01113 0.69 -0.2
1,183,834 + MPMX26_01113 0.75 -0.4

Or see this region's nucleotide sequence