Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01099

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01097 and MPMX26_01098 are separated by 301 nucleotidesMPMX26_01098 and MPMX26_01099 are separated by 221 nucleotidesMPMX26_01099 and MPMX26_01100 are separated by 10 nucleotides MPMX26_01097: MPMX26_01097 - Ribosomal RNA large subunit methyltransferase K/L, at 1,167,941 to 1,170,145 _01097 MPMX26_01098: MPMX26_01098 - hypothetical protein, at 1,170,447 to 1,170,782 _01098 MPMX26_01099: MPMX26_01099 - Aspartate carbamoyltransferase, at 1,171,004 to 1,172,020 _01099 MPMX26_01100: MPMX26_01100 - Dihydroorotase-like protein, at 1,172,031 to 1,173,266 _01100 Position (kb) 1171 1172 1173Strain fitness (log2 ratio) -1 0 1at 1170.010 kb on - strandat 1170.012 kb on - strandat 1170.012 kb on - strandat 1170.041 kb on - strandat 1170.041 kb on - strandat 1170.041 kb on - strandat 1170.096 kb on - strandat 1170.096 kb on - strandat 1170.105 kb on - strandat 1170.108 kb on - strandat 1170.108 kb on - strandat 1170.108 kb on - strandat 1171.187 kb on + strand, within MPMX26_01099at 1171.297 kb on + strand, within MPMX26_01099at 1171.315 kb on + strand, within MPMX26_01099at 1171.448 kb on + strand, within MPMX26_01099at 1171.468 kb on + strand, within MPMX26_01099at 1171.468 kb on + strand, within MPMX26_01099at 1171.472 kb on + strand, within MPMX26_01099at 1171.472 kb on + strand, within MPMX26_01099at 1171.568 kb on + strand, within MPMX26_01099at 1171.586 kb on + strand, within MPMX26_01099at 1171.633 kb on + strand, within MPMX26_01099at 1171.945 kb on + strandat 1171.945 kb on + strandat 1171.945 kb on + strandat 1171.945 kb on + strandat 1171.945 kb on + strandat 1172.011 kb on + strandat 1172.021 kb on + strandat 1172.028 kb on + strandat 1172.205 kb on + strand, within MPMX26_01100at 1172.321 kb on + strand, within MPMX26_01100at 1172.363 kb on + strand, within MPMX26_01100at 1172.402 kb on + strand, within MPMX26_01100at 1172.481 kb on + strand, within MPMX26_01100at 1172.535 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.540 kb on + strand, within MPMX26_01100at 1172.555 kb on + strand, within MPMX26_01100at 1172.555 kb on + strand, within MPMX26_01100at 1172.555 kb on + strand, within MPMX26_01100at 1172.598 kb on + strand, within MPMX26_01100at 1172.642 kb on + strand, within MPMX26_01100at 1172.723 kb on + strand, within MPMX26_01100at 1172.747 kb on + strand, within MPMX26_01100at 1172.762 kb on + strand, within MPMX26_01100at 1172.802 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.862 kb on + strand, within MPMX26_01100at 1172.874 kb on + strand, within MPMX26_01100at 1172.874 kb on + strand, within MPMX26_01100at 1172.874 kb on + strand, within MPMX26_01100at 1172.874 kb on + strand, within MPMX26_01100at 1172.879 kb on + strand, within MPMX26_01100at 1172.886 kb on + strand, within MPMX26_01100at 1172.901 kb on + strand, within MPMX26_01100at 1172.946 kb on + strand, within MPMX26_01100

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,170,010 - -0.1
1,170,012 - -1.0
1,170,012 - +0.6
1,170,041 - -0.1
1,170,041 - -0.4
1,170,041 - +1.5
1,170,096 - +0.1
1,170,096 - -0.2
1,170,105 - +0.2
1,170,108 - -0.6
1,170,108 - +0.2
1,170,108 - -0.1
1,171,187 + MPMX26_01099 0.18 +0.7
1,171,297 + MPMX26_01099 0.29 +0.7
1,171,315 + MPMX26_01099 0.31 +0.1
1,171,448 + MPMX26_01099 0.44 +0.1
1,171,468 + MPMX26_01099 0.46 -0.3
1,171,468 + MPMX26_01099 0.46 -0.3
1,171,472 + MPMX26_01099 0.46 +0.7
1,171,472 + MPMX26_01099 0.46 -0.7
1,171,568 + MPMX26_01099 0.55 -0.9
1,171,586 + MPMX26_01099 0.57 +0.7
1,171,633 + MPMX26_01099 0.62 -0.3
1,171,945 + -0.3
1,171,945 + -0.3
1,171,945 + +0.7
1,171,945 + +0.1
1,171,945 + +0.7
1,172,011 + +1.2
1,172,021 + +0.4
1,172,028 + -0.2
1,172,205 + MPMX26_01100 0.14 -0.3
1,172,321 + MPMX26_01100 0.23 +0.1
1,172,363 + MPMX26_01100 0.27 -0.3
1,172,402 + MPMX26_01100 0.30 -0.3
1,172,481 + MPMX26_01100 0.36 +0.7
1,172,535 + MPMX26_01100 0.41 +0.1
1,172,540 + MPMX26_01100 0.41 +0.1
1,172,540 + MPMX26_01100 0.41 +1.7
1,172,540 + MPMX26_01100 0.41 -1.1
1,172,540 + MPMX26_01100 0.41 +0.7
1,172,540 + MPMX26_01100 0.41 -0.7
1,172,540 + MPMX26_01100 0.41 -0.7
1,172,555 + MPMX26_01100 0.42 +0.1
1,172,555 + MPMX26_01100 0.42 -0.3
1,172,555 + MPMX26_01100 0.42 +1.7
1,172,598 + MPMX26_01100 0.46 +0.1
1,172,642 + MPMX26_01100 0.49 -0.9
1,172,723 + MPMX26_01100 0.56 -0.7
1,172,747 + MPMX26_01100 0.58 +0.7
1,172,762 + MPMX26_01100 0.59 -0.3
1,172,802 + MPMX26_01100 0.62 +0.7
1,172,862 + MPMX26_01100 0.67 -0.3
1,172,862 + MPMX26_01100 0.67 +0.7
1,172,862 + MPMX26_01100 0.67 +0.1
1,172,862 + MPMX26_01100 0.67 +0.1
1,172,862 + MPMX26_01100 0.67 -0.3
1,172,862 + MPMX26_01100 0.67 -0.7
1,172,862 + MPMX26_01100 0.67 +0.7
1,172,874 + MPMX26_01100 0.68 -0.3
1,172,874 + MPMX26_01100 0.68 -0.7
1,172,874 + MPMX26_01100 0.68 +0.7
1,172,874 + MPMX26_01100 0.68 -0.9
1,172,879 + MPMX26_01100 0.69 -0.9
1,172,886 + MPMX26_01100 0.69 -0.7
1,172,901 + MPMX26_01100 0.70 -0.9
1,172,946 + MPMX26_01100 0.74 -0.7

Or see this region's nucleotide sequence