Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00996

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00992 and MPMX26_00993 are separated by 57 nucleotidesMPMX26_00993 and MPMX26_00994 are separated by 201 nucleotidesMPMX26_00994 and MPMX26_00995 are separated by 201 nucleotidesMPMX26_00995 and MPMX26_00996 are separated by 145 nucleotidesMPMX26_00996 and MPMX26_00997 are separated by 149 nucleotides MPMX26_00992: MPMX26_00992 - hypothetical protein, at 1,044,337 to 1,044,780 _00992 MPMX26_00993: MPMX26_00993 - tRNA-Asn, at 1,044,838 to 1,044,913 _00993 MPMX26_00994: MPMX26_00994 - tRNA-Asn, at 1,045,115 to 1,045,190 _00994 MPMX26_00995: MPMX26_00995 - tRNA-Asn, at 1,045,392 to 1,045,467 _00995 MPMX26_00996: MPMX26_00996 - Superoxide dismutase [Fe], at 1,045,613 to 1,046,239 _00996 MPMX26_00997: MPMX26_00997 - GTP cyclohydrolase 1 type 2, at 1,046,389 to 1,047,147 _00997 Position (kb) 1045 1046 1047Strain fitness (log2 ratio) -1 0 1at 1045.924 kb on - strand, within MPMX26_00996at 1045.958 kb on - strand, within MPMX26_00996at 1046.045 kb on - strand, within MPMX26_00996at 1046.088 kb on - strand, within MPMX26_00996at 1046.120 kb on - strand, within MPMX26_00996at 1046.120 kb on - strand, within MPMX26_00996at 1046.120 kb on - strand, within MPMX26_00996at 1046.152 kb on - strand, within MPMX26_00996at 1046.240 kb on - strandat 1046.466 kb on - strand, within MPMX26_00997at 1046.466 kb on - strand, within MPMX26_00997at 1046.476 kb on - strand, within MPMX26_00997at 1046.476 kb on - strand, within MPMX26_00997at 1046.476 kb on - strand, within MPMX26_00997at 1046.476 kb on - strand, within MPMX26_00997at 1046.476 kb on - strand, within MPMX26_00997at 1046.488 kb on - strand, within MPMX26_00997at 1046.511 kb on - strand, within MPMX26_00997at 1046.526 kb on - strand, within MPMX26_00997at 1046.552 kb on - strand, within MPMX26_00997at 1046.578 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.583 kb on - strand, within MPMX26_00997at 1046.610 kb on - strand, within MPMX26_00997at 1046.665 kb on - strand, within MPMX26_00997at 1046.677 kb on - strand, within MPMX26_00997at 1046.677 kb on - strand, within MPMX26_00997at 1046.685 kb on - strand, within MPMX26_00997at 1046.717 kb on - strand, within MPMX26_00997at 1046.749 kb on - strand, within MPMX26_00997at 1046.749 kb on - strand, within MPMX26_00997at 1046.751 kb on - strand, within MPMX26_00997at 1046.785 kb on - strand, within MPMX26_00997at 1046.827 kb on - strand, within MPMX26_00997at 1046.857 kb on - strand, within MPMX26_00997at 1046.881 kb on - strand, within MPMX26_00997at 1046.937 kb on - strand, within MPMX26_00997at 1047.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,045,924 - MPMX26_00996 0.50 -1.2
1,045,958 - MPMX26_00996 0.55 +0.1
1,046,045 - MPMX26_00996 0.69 -0.3
1,046,088 - MPMX26_00996 0.76 -0.7
1,046,120 - MPMX26_00996 0.81 -0.3
1,046,120 - MPMX26_00996 0.81 -0.7
1,046,120 - MPMX26_00996 0.81 -0.7
1,046,152 - MPMX26_00996 0.86 +0.1
1,046,240 - -1.3
1,046,466 - MPMX26_00997 0.10 -0.2
1,046,466 - MPMX26_00997 0.10 +0.2
1,046,476 - MPMX26_00997 0.11 -0.3
1,046,476 - MPMX26_00997 0.11 +0.1
1,046,476 - MPMX26_00997 0.11 +0.7
1,046,476 - MPMX26_00997 0.11 -0.7
1,046,476 - MPMX26_00997 0.11 +0.2
1,046,488 - MPMX26_00997 0.13 -0.5
1,046,511 - MPMX26_00997 0.16 +0.1
1,046,526 - MPMX26_00997 0.18 -0.0
1,046,552 - MPMX26_00997 0.21 +0.6
1,046,578 - MPMX26_00997 0.25 +0.6
1,046,583 - MPMX26_00997 0.26 -0.5
1,046,583 - MPMX26_00997 0.26 +0.2
1,046,583 - MPMX26_00997 0.26 +0.7
1,046,583 - MPMX26_00997 0.26 +0.3
1,046,583 - MPMX26_00997 0.26 +0.1
1,046,583 - MPMX26_00997 0.26 -0.7
1,046,583 - MPMX26_00997 0.26 +0.5
1,046,583 - MPMX26_00997 0.26 -0.4
1,046,583 - MPMX26_00997 0.26 -0.9
1,046,583 - MPMX26_00997 0.26 +0.2
1,046,583 - MPMX26_00997 0.26 -0.3
1,046,583 - MPMX26_00997 0.26 +0.5
1,046,583 - MPMX26_00997 0.26 -0.2
1,046,583 - MPMX26_00997 0.26 -0.9
1,046,583 - MPMX26_00997 0.26 +0.3
1,046,610 - MPMX26_00997 0.29 -0.4
1,046,665 - MPMX26_00997 0.36 +0.3
1,046,677 - MPMX26_00997 0.38 -0.2
1,046,677 - MPMX26_00997 0.38 +0.0
1,046,685 - MPMX26_00997 0.39 +0.2
1,046,717 - MPMX26_00997 0.43 +0.1
1,046,749 - MPMX26_00997 0.47 +0.7
1,046,749 - MPMX26_00997 0.47 +0.3
1,046,751 - MPMX26_00997 0.48 -0.1
1,046,785 - MPMX26_00997 0.52 -0.0
1,046,827 - MPMX26_00997 0.58 -0.2
1,046,857 - MPMX26_00997 0.62 +0.2
1,046,881 - MPMX26_00997 0.65 -0.4
1,046,937 - MPMX26_00997 0.72 +0.2
1,047,150 - +0.3

Or see this region's nucleotide sequence