Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00617

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00616 and MPMX26_00617 are separated by 168 nucleotidesMPMX26_00617 and MPMX26_00618 are separated by 86 nucleotides MPMX26_00616: MPMX26_00616 - hypothetical protein, at 651,224 to 653,833 _00616 MPMX26_00617: MPMX26_00617 - hypothetical protein, at 654,002 to 654,562 _00617 MPMX26_00618: MPMX26_00618 - Inner membrane protein YccS, at 654,649 to 656,820 _00618 Position (kb) 654 655Strain fitness (log2 ratio) -3 -2 -1 0 1at 653.005 kb on - strand, within MPMX26_00616at 653.013 kb on + strand, within MPMX26_00616at 653.023 kb on + strand, within MPMX26_00616at 653.036 kb on + strand, within MPMX26_00616at 653.036 kb on + strand, within MPMX26_00616at 653.044 kb on - strand, within MPMX26_00616at 653.044 kb on - strand, within MPMX26_00616at 653.066 kb on - strand, within MPMX26_00616at 653.066 kb on - strand, within MPMX26_00616at 653.066 kb on - strand, within MPMX26_00616at 653.076 kb on - strand, within MPMX26_00616at 653.078 kb on - strand, within MPMX26_00616at 653.083 kb on - strand, within MPMX26_00616at 653.085 kb on - strand, within MPMX26_00616at 653.088 kb on - strand, within MPMX26_00616at 653.132 kb on - strand, within MPMX26_00616at 653.166 kb on - strand, within MPMX26_00616at 653.172 kb on - strand, within MPMX26_00616at 653.172 kb on - strand, within MPMX26_00616at 653.177 kb on - strand, within MPMX26_00616at 653.186 kb on - strand, within MPMX26_00616at 653.186 kb on - strand, within MPMX26_00616at 653.186 kb on - strand, within MPMX26_00616at 653.186 kb on - strand, within MPMX26_00616at 653.186 kb on - strand, within MPMX26_00616at 653.198 kb on - strand, within MPMX26_00616at 653.198 kb on - strand, within MPMX26_00616at 653.209 kb on - strand, within MPMX26_00616at 653.214 kb on - strand, within MPMX26_00616at 653.214 kb on - strand, within MPMX26_00616at 653.224 kb on - strand, within MPMX26_00616at 653.239 kb on - strand, within MPMX26_00616at 653.262 kb on - strand, within MPMX26_00616at 653.264 kb on - strand, within MPMX26_00616at 653.302 kb on + strand, within MPMX26_00616at 653.320 kb on - strand, within MPMX26_00616at 653.344 kb on - strand, within MPMX26_00616at 653.366 kb on - strand, within MPMX26_00616at 653.380 kb on - strand, within MPMX26_00616at 653.405 kb on - strand, within MPMX26_00616at 653.409 kb on + strand, within MPMX26_00616at 653.409 kb on + strand, within MPMX26_00616at 653.431 kb on + strand, within MPMX26_00616at 653.431 kb on + strand, within MPMX26_00616at 653.439 kb on - strand, within MPMX26_00616at 653.439 kb on - strand, within MPMX26_00616at 653.439 kb on - strand, within MPMX26_00616at 653.439 kb on - strand, within MPMX26_00616at 653.445 kb on - strand, within MPMX26_00616at 653.466 kb on - strand, within MPMX26_00616at 653.511 kb on + strand, within MPMX26_00616at 653.511 kb on + strand, within MPMX26_00616at 653.511 kb on + strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.519 kb on - strand, within MPMX26_00616at 653.525 kb on - strand, within MPMX26_00616at 653.538 kb on - strand, within MPMX26_00616at 653.572 kb on - strand, within MPMX26_00616at 653.590 kb on - strandat 653.599 kb on + strandat 653.607 kb on - strandat 653.607 kb on - strandat 653.607 kb on - strandat 653.607 kb on - strandat 653.620 kb on + strandat 653.661 kb on + strandat 653.669 kb on - strandat 653.669 kb on - strandat 653.669 kb on - strandat 653.697 kb on - strandat 653.700 kb on - strandat 653.702 kb on + strandat 653.702 kb on - strandat 653.702 kb on - strandat 653.710 kb on - strandat 653.710 kb on - strandat 653.715 kb on - strandat 653.779 kb on + strandat 653.809 kb on - strandat 653.839 kb on - strandat 654.016 kb on - strandat 654.017 kb on - strandat 654.017 kb on - strandat 654.017 kb on - strandat 654.017 kb on - strandat 654.017 kb on - strandat 654.103 kb on - strand, within MPMX26_00617at 654.103 kb on - strand, within MPMX26_00617at 654.103 kb on - strand, within MPMX26_00617at 654.112 kb on - strand, within MPMX26_00617at 654.236 kb on - strand, within MPMX26_00617at 654.305 kb on - strand, within MPMX26_00617at 654.313 kb on - strand, within MPMX26_00617at 654.313 kb on - strand, within MPMX26_00617at 654.355 kb on - strand, within MPMX26_00617at 654.355 kb on - strand, within MPMX26_00617at 654.355 kb on - strand, within MPMX26_00617at 654.355 kb on - strand, within MPMX26_00617at 654.355 kb on - strand, within MPMX26_00617at 654.355 kb on - strand, within MPMX26_00617at 654.355 kb on - strand, within MPMX26_00617at 654.502 kb on - strand, within MPMX26_00617at 654.502 kb on - strand, within MPMX26_00617at 654.542 kb on - strandat 654.718 kb on - strandat 654.718 kb on - strandat 654.718 kb on - strandat 654.718 kb on - strandat 654.777 kb on - strandat 654.841 kb on - strandat 654.845 kb on - strandat 654.855 kb on - strandat 654.861 kb on - strandat 654.864 kb on - strandat 654.897 kb on - strand, within MPMX26_00618at 655.107 kb on - strand, within MPMX26_00618at 655.107 kb on - strand, within MPMX26_00618at 655.107 kb on - strand, within MPMX26_00618at 655.194 kb on - strand, within MPMX26_00618at 655.222 kb on - strand, within MPMX26_00618at 655.243 kb on - strand, within MPMX26_00618at 655.243 kb on - strand, within MPMX26_00618at 655.401 kb on - strand, within MPMX26_00618at 655.414 kb on - strand, within MPMX26_00618at 655.425 kb on - strand, within MPMX26_00618

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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653,005 - MPMX26_00616 0.68 -0.9
653,013 + MPMX26_00616 0.69 -1.1
653,023 + MPMX26_00616 0.69 +0.5
653,036 + MPMX26_00616 0.69 -0.9
653,036 + MPMX26_00616 0.69 +1.1
653,044 - MPMX26_00616 0.70 -0.6
653,044 - MPMX26_00616 0.70 +1.1
653,066 - MPMX26_00616 0.71 -0.4
653,066 - MPMX26_00616 0.71 -0.5
653,066 - MPMX26_00616 0.71 -0.9
653,076 - MPMX26_00616 0.71 +0.4
653,078 - MPMX26_00616 0.71 -0.5
653,083 - MPMX26_00616 0.71 -1.3
653,085 - MPMX26_00616 0.71 -0.2
653,088 - MPMX26_00616 0.71 -0.5
653,132 - MPMX26_00616 0.73 -0.7
653,166 - MPMX26_00616 0.74 -0.8
653,172 - MPMX26_00616 0.75 -0.9
653,172 - MPMX26_00616 0.75 +0.2
653,177 - MPMX26_00616 0.75 -1.7
653,186 - MPMX26_00616 0.75 -0.0
653,186 - MPMX26_00616 0.75 -0.0
653,186 - MPMX26_00616 0.75 +0.5
653,186 - MPMX26_00616 0.75 -1.5
653,186 - MPMX26_00616 0.75 -0.5
653,198 - MPMX26_00616 0.76 +0.4
653,198 - MPMX26_00616 0.76 +0.1
653,209 - MPMX26_00616 0.76 -0.9
653,214 - MPMX26_00616 0.76 -0.4
653,214 - MPMX26_00616 0.76 +1.2
653,224 - MPMX26_00616 0.77 -0.5
653,239 - MPMX26_00616 0.77 -1.7
653,262 - MPMX26_00616 0.78 -0.5
653,264 - MPMX26_00616 0.78 -0.9
653,302 + MPMX26_00616 0.80 -0.7
653,320 - MPMX26_00616 0.80 -1.0
653,344 - MPMX26_00616 0.81 -1.7
653,366 - MPMX26_00616 0.82 -0.6
653,380 - MPMX26_00616 0.83 -0.4
653,405 - MPMX26_00616 0.84 -0.5
653,409 + MPMX26_00616 0.84 +0.0
653,409 + MPMX26_00616 0.84 +0.4
653,431 + MPMX26_00616 0.85 -1.0
653,431 + MPMX26_00616 0.85 +0.0
653,439 - MPMX26_00616 0.85 -0.1
653,439 - MPMX26_00616 0.85 +0.4
653,439 - MPMX26_00616 0.85 +0.2
653,439 - MPMX26_00616 0.85 -0.0
653,445 - MPMX26_00616 0.85 -0.3
653,466 - MPMX26_00616 0.86 -1.0
653,511 + MPMX26_00616 0.88 -1.3
653,511 + MPMX26_00616 0.88 -0.2
653,511 + MPMX26_00616 0.88 +0.0
653,519 - MPMX26_00616 0.88 -2.2
653,519 - MPMX26_00616 0.88 -0.9
653,519 - MPMX26_00616 0.88 -0.2
653,519 - MPMX26_00616 0.88 -0.5
653,519 - MPMX26_00616 0.88 +0.2
653,519 - MPMX26_00616 0.88 -0.2
653,519 - MPMX26_00616 0.88 +0.1
653,519 - MPMX26_00616 0.88 -0.1
653,519 - MPMX26_00616 0.88 +0.0
653,519 - MPMX26_00616 0.88 -0.3
653,519 - MPMX26_00616 0.88 +0.0
653,519 - MPMX26_00616 0.88 -3.0
653,519 - MPMX26_00616 0.88 -0.6
653,519 - MPMX26_00616 0.88 -0.4
653,519 - MPMX26_00616 0.88 +0.2
653,519 - MPMX26_00616 0.88 +0.1
653,519 - MPMX26_00616 0.88 -0.5
653,519 - MPMX26_00616 0.88 -0.9
653,525 - MPMX26_00616 0.88 +0.6
653,538 - MPMX26_00616 0.89 +0.4
653,572 - MPMX26_00616 0.90 +0.0
653,590 - -0.4
653,599 + +0.1
653,607 - -0.1
653,607 - +1.1
653,607 - +0.0
653,607 - -1.3
653,620 + -0.1
653,661 + -0.7
653,669 - -0.7
653,669 - -0.5
653,669 - -1.0
653,697 - +0.1
653,700 - -2.0
653,702 + -0.6
653,702 - +0.9
653,702 - -1.4
653,710 - +0.4
653,710 - -0.7
653,715 - -0.4
653,779 + -0.5
653,809 - -0.4
653,839 - +0.6
654,016 - -0.3
654,017 - -0.8
654,017 - -0.1
654,017 - +0.0
654,017 - -0.7
654,017 - -0.5
654,103 - MPMX26_00617 0.18 -1.8
654,103 - MPMX26_00617 0.18 -0.2
654,103 - MPMX26_00617 0.18 -1.1
654,112 - MPMX26_00617 0.20 -0.4
654,236 - MPMX26_00617 0.42 -1.1
654,305 - MPMX26_00617 0.54 +0.0
654,313 - MPMX26_00617 0.55 -1.4
654,313 - MPMX26_00617 0.55 +0.4
654,355 - MPMX26_00617 0.63 -0.7
654,355 - MPMX26_00617 0.63 -0.4
654,355 - MPMX26_00617 0.63 -1.2
654,355 - MPMX26_00617 0.63 -1.5
654,355 - MPMX26_00617 0.63 -1.1
654,355 - MPMX26_00617 0.63 -0.2
654,355 - MPMX26_00617 0.63 -1.0
654,502 - MPMX26_00617 0.89 -1.0
654,502 - MPMX26_00617 0.89 -0.3
654,542 - -2.6
654,718 - -0.2
654,718 - +0.6
654,718 - +0.9
654,718 - +0.4
654,777 - -0.7
654,841 - -0.6
654,845 - +0.5
654,855 - +1.1
654,861 - +0.2
654,864 - +0.9
654,897 - MPMX26_00618 0.11 +0.5
655,107 - MPMX26_00618 0.21 -0.1
655,107 - MPMX26_00618 0.21 -0.2
655,107 - MPMX26_00618 0.21 +0.1
655,194 - MPMX26_00618 0.25 +0.0
655,222 - MPMX26_00618 0.26 +0.2
655,243 - MPMX26_00618 0.27 +0.2
655,243 - MPMX26_00618 0.27 +0.6
655,401 - MPMX26_00618 0.35 -0.2
655,414 - MPMX26_00618 0.35 +1.1
655,425 - MPMX26_00618 0.36 +0.5

Or see this region's nucleotide sequence