Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00572

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00571 and MPMX26_00572 are separated by 16 nucleotidesMPMX26_00572 and MPMX26_00573 are separated by 26 nucleotidesMPMX26_00573 and MPMX26_00574 are separated by 70 nucleotides MPMX26_00571: MPMX26_00571 - tRNA(Ile)-lysidine synthase, at 602,848 to 604,092 _00571 MPMX26_00572: MPMX26_00572 - Pyrroline-5-carboxylate reductase, at 604,109 to 604,939 _00572 MPMX26_00573: MPMX26_00573 - hypothetical protein, at 604,966 to 605,535 _00573 MPMX26_00574: MPMX26_00574 - DNA polymerase I, at 605,606 to 608,365 _00574 Position (kb) 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 603.678 kb on + strand, within MPMX26_00571at 604.063 kb on + strandat 604.081 kb on + strandat 604.100 kb on + strandat 604.100 kb on + strandat 604.111 kb on + strandat 604.141 kb on + strandat 604.160 kb on + strandat 604.165 kb on + strandat 604.166 kb on + strandat 604.187 kb on + strandat 604.209 kb on + strand, within MPMX26_00572at 604.209 kb on + strand, within MPMX26_00572at 604.237 kb on + strand, within MPMX26_00572at 604.282 kb on + strand, within MPMX26_00572at 604.302 kb on + strand, within MPMX26_00572at 604.336 kb on + strand, within MPMX26_00572at 604.337 kb on + strand, within MPMX26_00572at 604.342 kb on + strand, within MPMX26_00572at 604.342 kb on + strand, within MPMX26_00572at 604.342 kb on + strand, within MPMX26_00572at 604.342 kb on + strand, within MPMX26_00572at 604.342 kb on + strand, within MPMX26_00572at 604.347 kb on + strand, within MPMX26_00572at 604.349 kb on + strand, within MPMX26_00572at 604.367 kb on + strand, within MPMX26_00572at 604.367 kb on + strand, within MPMX26_00572at 604.406 kb on + strand, within MPMX26_00572at 604.414 kb on + strand, within MPMX26_00572at 604.430 kb on + strand, within MPMX26_00572at 604.435 kb on + strand, within MPMX26_00572at 604.435 kb on + strand, within MPMX26_00572at 604.435 kb on + strand, within MPMX26_00572at 604.435 kb on + strand, within MPMX26_00572at 604.435 kb on + strand, within MPMX26_00572at 604.435 kb on + strand, within MPMX26_00572at 604.465 kb on + strand, within MPMX26_00572at 604.483 kb on + strand, within MPMX26_00572at 604.483 kb on + strand, within MPMX26_00572at 604.483 kb on + strand, within MPMX26_00572at 604.483 kb on + strand, within MPMX26_00572at 604.483 kb on + strand, within MPMX26_00572at 604.483 kb on + strand, within MPMX26_00572at 604.489 kb on + strand, within MPMX26_00572at 604.491 kb on - strand, within MPMX26_00572at 604.505 kb on + strand, within MPMX26_00572at 604.515 kb on + strand, within MPMX26_00572at 604.520 kb on + strand, within MPMX26_00572at 604.551 kb on + strand, within MPMX26_00572at 604.572 kb on + strand, within MPMX26_00572at 604.572 kb on + strand, within MPMX26_00572at 604.585 kb on + strand, within MPMX26_00572at 604.585 kb on + strand, within MPMX26_00572at 604.585 kb on + strand, within MPMX26_00572at 604.585 kb on + strand, within MPMX26_00572at 604.593 kb on + strand, within MPMX26_00572at 604.598 kb on + strand, within MPMX26_00572at 604.603 kb on + strand, within MPMX26_00572at 604.603 kb on + strand, within MPMX26_00572at 604.611 kb on + strand, within MPMX26_00572at 604.624 kb on + strand, within MPMX26_00572at 604.624 kb on + strand, within MPMX26_00572at 604.624 kb on + strand, within MPMX26_00572at 604.624 kb on + strand, within MPMX26_00572at 604.624 kb on + strand, within MPMX26_00572at 604.624 kb on + strand, within MPMX26_00572at 604.624 kb on + strand, within MPMX26_00572at 604.629 kb on + strand, within MPMX26_00572at 604.630 kb on - strand, within MPMX26_00572at 604.665 kb on + strand, within MPMX26_00572at 604.665 kb on + strand, within MPMX26_00572at 604.670 kb on + strand, within MPMX26_00572at 604.733 kb on + strand, within MPMX26_00572at 604.733 kb on + strand, within MPMX26_00572at 604.733 kb on + strand, within MPMX26_00572at 604.733 kb on + strand, within MPMX26_00572at 604.733 kb on + strand, within MPMX26_00572at 604.733 kb on + strand, within MPMX26_00572at 604.733 kb on + strand, within MPMX26_00572at 604.740 kb on + strand, within MPMX26_00572at 604.740 kb on + strand, within MPMX26_00572at 604.773 kb on - strand, within MPMX26_00572at 604.776 kb on + strand, within MPMX26_00572at 604.803 kb on + strand, within MPMX26_00572at 604.810 kb on + strand, within MPMX26_00572at 604.812 kb on + strand, within MPMX26_00572at 604.812 kb on + strand, within MPMX26_00572at 604.812 kb on + strand, within MPMX26_00572at 604.812 kb on + strand, within MPMX26_00572at 604.845 kb on + strand, within MPMX26_00572at 604.870 kb on + strandat 604.874 kb on + strandat 604.874 kb on + strandat 604.899 kb on + strandat 604.911 kb on + strandat 604.969 kb on + strandat 604.999 kb on + strandat 605.088 kb on + strand, within MPMX26_00573at 605.088 kb on + strand, within MPMX26_00573at 605.093 kb on + strand, within MPMX26_00573at 605.105 kb on + strand, within MPMX26_00573at 605.105 kb on + strand, within MPMX26_00573at 605.113 kb on + strand, within MPMX26_00573at 605.120 kb on + strand, within MPMX26_00573at 605.120 kb on + strand, within MPMX26_00573at 605.120 kb on + strand, within MPMX26_00573at 605.150 kb on + strand, within MPMX26_00573at 605.165 kb on + strand, within MPMX26_00573at 605.219 kb on + strand, within MPMX26_00573at 605.220 kb on + strand, within MPMX26_00573at 605.220 kb on + strand, within MPMX26_00573at 605.220 kb on + strand, within MPMX26_00573at 605.220 kb on + strand, within MPMX26_00573at 605.220 kb on + strand, within MPMX26_00573at 605.220 kb on + strand, within MPMX26_00573at 605.225 kb on + strand, within MPMX26_00573at 605.225 kb on + strand, within MPMX26_00573at 605.235 kb on + strand, within MPMX26_00573at 605.235 kb on + strand, within MPMX26_00573at 605.240 kb on + strand, within MPMX26_00573at 605.240 kb on + strand, within MPMX26_00573at 605.326 kb on + strand, within MPMX26_00573at 605.326 kb on + strand, within MPMX26_00573at 605.326 kb on + strand, within MPMX26_00573at 605.336 kb on + strand, within MPMX26_00573at 605.340 kb on + strand, within MPMX26_00573at 605.345 kb on + strand, within MPMX26_00573at 605.345 kb on + strand, within MPMX26_00573at 605.358 kb on + strand, within MPMX26_00573at 605.369 kb on + strand, within MPMX26_00573at 605.391 kb on + strand, within MPMX26_00573at 605.398 kb on + strand, within MPMX26_00573at 605.398 kb on + strand, within MPMX26_00573at 605.441 kb on + strand, within MPMX26_00573at 605.441 kb on + strand, within MPMX26_00573at 605.441 kb on + strand, within MPMX26_00573at 605.441 kb on + strand, within MPMX26_00573at 605.451 kb on + strand, within MPMX26_00573at 605.451 kb on + strand, within MPMX26_00573at 605.475 kb on + strand, within MPMX26_00573at 605.475 kb on + strand, within MPMX26_00573at 605.607 kb on - strandat 605.617 kb on - strandat 605.632 kb on - strandat 605.632 kb on - strandat 605.632 kb on - strandat 605.632 kb on - strandat 605.632 kb on - strandat 605.632 kb on - strandat 605.648 kb on - strandat 605.657 kb on - strandat 605.848 kb on - strandat 605.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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603,678 + MPMX26_00571 0.67 +0.2
604,063 + -0.2
604,081 + +0.2
604,100 + -0.2
604,100 + -1.5
604,111 + -0.5
604,141 + -1.0
604,160 + +1.7
604,165 + -1.2
604,166 + +0.7
604,187 + -0.9
604,209 + MPMX26_00572 0.12 -0.7
604,209 + MPMX26_00572 0.12 -1.0
604,237 + MPMX26_00572 0.15 -0.3
604,282 + MPMX26_00572 0.21 +0.0
604,302 + MPMX26_00572 0.23 -0.6
604,336 + MPMX26_00572 0.27 -1.6
604,337 + MPMX26_00572 0.27 +0.1
604,342 + MPMX26_00572 0.28 -0.7
604,342 + MPMX26_00572 0.28 -0.4
604,342 + MPMX26_00572 0.28 -1.3
604,342 + MPMX26_00572 0.28 -2.8
604,342 + MPMX26_00572 0.28 -2.1
604,347 + MPMX26_00572 0.29 -0.3
604,349 + MPMX26_00572 0.29 -1.3
604,367 + MPMX26_00572 0.31 -0.9
604,367 + MPMX26_00572 0.31 -0.2
604,406 + MPMX26_00572 0.36 -1.5
604,414 + MPMX26_00572 0.37 -0.9
604,430 + MPMX26_00572 0.39 -1.0
604,435 + MPMX26_00572 0.39 -0.9
604,435 + MPMX26_00572 0.39 -1.5
604,435 + MPMX26_00572 0.39 -0.3
604,435 + MPMX26_00572 0.39 +0.2
604,435 + MPMX26_00572 0.39 -1.2
604,435 + MPMX26_00572 0.39 -0.8
604,465 + MPMX26_00572 0.43 -0.7
604,483 + MPMX26_00572 0.45 -0.6
604,483 + MPMX26_00572 0.45 -1.0
604,483 + MPMX26_00572 0.45 +0.3
604,483 + MPMX26_00572 0.45 -1.0
604,483 + MPMX26_00572 0.45 -1.9
604,483 + MPMX26_00572 0.45 -1.2
604,489 + MPMX26_00572 0.46 -0.3
604,491 - MPMX26_00572 0.46 +0.3
604,505 + MPMX26_00572 0.48 -0.8
604,515 + MPMX26_00572 0.49 +0.3
604,520 + MPMX26_00572 0.49 -0.6
604,551 + MPMX26_00572 0.53 -1.2
604,572 + MPMX26_00572 0.56 -3.5
604,572 + MPMX26_00572 0.56 -0.8
604,585 + MPMX26_00572 0.57 -0.7
604,585 + MPMX26_00572 0.57 -0.6
604,585 + MPMX26_00572 0.57 -1.5
604,585 + MPMX26_00572 0.57 +0.1
604,593 + MPMX26_00572 0.58 -0.7
604,598 + MPMX26_00572 0.59 -1.3
604,603 + MPMX26_00572 0.59 -0.2
604,603 + MPMX26_00572 0.59 +0.4
604,611 + MPMX26_00572 0.60 -0.6
604,624 + MPMX26_00572 0.62 -1.3
604,624 + MPMX26_00572 0.62 -0.4
604,624 + MPMX26_00572 0.62 -0.6
604,624 + MPMX26_00572 0.62 +0.3
604,624 + MPMX26_00572 0.62 -1.4
604,624 + MPMX26_00572 0.62 -0.7
604,624 + MPMX26_00572 0.62 -1.2
604,629 + MPMX26_00572 0.63 -0.5
604,630 - MPMX26_00572 0.63 +0.7
604,665 + MPMX26_00572 0.67 -2.1
604,665 + MPMX26_00572 0.67 +0.2
604,670 + MPMX26_00572 0.68 -0.7
604,733 + MPMX26_00572 0.75 -0.7
604,733 + MPMX26_00572 0.75 -1.3
604,733 + MPMX26_00572 0.75 -1.7
604,733 + MPMX26_00572 0.75 -1.0
604,733 + MPMX26_00572 0.75 -0.2
604,733 + MPMX26_00572 0.75 -0.6
604,733 + MPMX26_00572 0.75 -0.6
604,740 + MPMX26_00572 0.76 -0.1
604,740 + MPMX26_00572 0.76 -0.6
604,773 - MPMX26_00572 0.80 -1.1
604,776 + MPMX26_00572 0.80 +0.0
604,803 + MPMX26_00572 0.84 -0.5
604,810 + MPMX26_00572 0.84 -1.2
604,812 + MPMX26_00572 0.85 -1.0
604,812 + MPMX26_00572 0.85 -0.2
604,812 + MPMX26_00572 0.85 +1.7
604,812 + MPMX26_00572 0.85 -1.2
604,845 + MPMX26_00572 0.89 -0.2
604,870 + -0.3
604,874 + -0.1
604,874 + -0.3
604,899 + +0.0
604,911 + -0.3
604,969 + -0.7
604,999 + -0.5
605,088 + MPMX26_00573 0.21 -0.7
605,088 + MPMX26_00573 0.21 -0.8
605,093 + MPMX26_00573 0.22 -0.9
605,105 + MPMX26_00573 0.24 -0.2
605,105 + MPMX26_00573 0.24 -0.0
605,113 + MPMX26_00573 0.26 +0.0
605,120 + MPMX26_00573 0.27 +0.0
605,120 + MPMX26_00573 0.27 +0.4
605,120 + MPMX26_00573 0.27 -1.1
605,150 + MPMX26_00573 0.32 -0.4
605,165 + MPMX26_00573 0.35 -0.2
605,219 + MPMX26_00573 0.44 -0.3
605,220 + MPMX26_00573 0.45 -0.6
605,220 + MPMX26_00573 0.45 -0.3
605,220 + MPMX26_00573 0.45 -0.5
605,220 + MPMX26_00573 0.45 -1.3
605,220 + MPMX26_00573 0.45 -0.9
605,220 + MPMX26_00573 0.45 +0.3
605,225 + MPMX26_00573 0.45 -0.8
605,225 + MPMX26_00573 0.45 +0.7
605,235 + MPMX26_00573 0.47 +0.1
605,235 + MPMX26_00573 0.47 -0.4
605,240 + MPMX26_00573 0.48 +0.0
605,240 + MPMX26_00573 0.48 -0.5
605,326 + MPMX26_00573 0.63 +2.1
605,326 + MPMX26_00573 0.63 -0.9
605,326 + MPMX26_00573 0.63 -0.4
605,336 + MPMX26_00573 0.65 -0.2
605,340 + MPMX26_00573 0.66 +0.1
605,345 + MPMX26_00573 0.66 +0.1
605,345 + MPMX26_00573 0.66 -0.3
605,358 + MPMX26_00573 0.69 -0.6
605,369 + MPMX26_00573 0.71 -1.2
605,391 + MPMX26_00573 0.75 -0.2
605,398 + MPMX26_00573 0.76 -0.0
605,398 + MPMX26_00573 0.76 +0.2
605,441 + MPMX26_00573 0.83 -1.1
605,441 + MPMX26_00573 0.83 +0.3
605,441 + MPMX26_00573 0.83 -1.2
605,441 + MPMX26_00573 0.83 +1.7
605,451 + MPMX26_00573 0.85 -1.5
605,451 + MPMX26_00573 0.85 +0.1
605,475 + MPMX26_00573 0.89 +0.8
605,475 + MPMX26_00573 0.89 +0.1
605,607 - -0.3
605,617 - -1.4
605,632 - -0.2
605,632 - -0.6
605,632 - +0.7
605,632 - +0.2
605,632 - +0.0
605,632 - +0.3
605,648 - +0.5
605,657 - +0.3
605,848 - -0.3
605,848 - -0.7

Or see this region's nucleotide sequence