Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00396

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00395 and MPMX26_00396 are separated by 157 nucleotidesMPMX26_00396 and MPMX26_00397 overlap by 4 nucleotidesMPMX26_00397 and MPMX26_00398 are separated by 10 nucleotidesMPMX26_00398 and MPMX26_00399 are separated by 152 nucleotides MPMX26_00395: MPMX26_00395 - hypothetical protein, at 421,955 to 424,285 _00395 MPMX26_00396: MPMX26_00396 - Sec-independent protein translocase protein TatC, at 424,443 to 425,225 _00396 MPMX26_00397: MPMX26_00397 - Sec-independent protein translocase protein TatB, at 425,222 to 425,683 _00397 MPMX26_00398: MPMX26_00398 - Sec-independent protein translocase protein TatA, at 425,694 to 425,918 _00398 MPMX26_00399: MPMX26_00399 - hypothetical protein, at 426,071 to 426,946 _00399 Position (kb) 424 425 426Strain fitness (log2 ratio) -1 0 1at 424.065 kb on - strandat 424.782 kb on - strand, within MPMX26_00396at 426.079 kb on + strandat 426.118 kb on + strandat 426.118 kb on + strandat 426.118 kb on + strandat 426.166 kb on + strand, within MPMX26_00399

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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424,065 - -0.7
424,782 - MPMX26_00396 0.43 -0.9
426,079 + -0.9
426,118 + -0.9
426,118 + -0.0
426,118 + +0.2
426,166 + MPMX26_00399 0.11 +0.3

Or see this region's nucleotide sequence