Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00273

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00272 and MPMX26_00273 are separated by 39 nucleotidesMPMX26_00273 and MPMX26_00274 are separated by 855 nucleotides MPMX26_00272: MPMX26_00272 - RecBCD enzyme subunit RecB, at 296,353 to 300,057 _00272 MPMX26_00273: MPMX26_00273 - RecBCD enzyme subunit RecD, at 300,097 to 301,905 _00273 MPMX26_00274: MPMX26_00274 - 30S ribosomal protein S15, at 302,761 to 303,030 _00274 Position (kb) 300 301 302Strain fitness (log2 ratio) -3 -2 -1 0 1at 299.128 kb on + strand, within MPMX26_00272at 299.254 kb on + strand, within MPMX26_00272at 299.466 kb on + strand, within MPMX26_00272at 299.470 kb on + strand, within MPMX26_00272at 299.470 kb on + strand, within MPMX26_00272at 299.470 kb on + strand, within MPMX26_00272at 299.559 kb on + strand, within MPMX26_00272at 299.730 kb on + strandat 299.797 kb on + strandat 299.849 kb on + strandat 299.871 kb on + strandat 299.905 kb on + strandat 299.921 kb on + strandat 299.924 kb on + strandat 299.924 kb on + strandat 299.924 kb on + strandat 299.975 kb on + strandat 300.119 kb on + strandat 300.129 kb on + strandat 300.143 kb on - strandat 300.186 kb on + strandat 300.186 kb on + strandat 300.186 kb on + strandat 300.186 kb on + strandat 300.271 kb on + strandat 300.281 kb on + strand, within MPMX26_00273at 300.281 kb on + strand, within MPMX26_00273at 300.283 kb on + strand, within MPMX26_00273at 300.283 kb on + strand, within MPMX26_00273at 300.286 kb on + strand, within MPMX26_00273at 300.291 kb on + strand, within MPMX26_00273at 300.291 kb on + strand, within MPMX26_00273at 300.292 kb on + strand, within MPMX26_00273at 300.302 kb on + strand, within MPMX26_00273at 300.302 kb on + strand, within MPMX26_00273at 300.302 kb on + strand, within MPMX26_00273at 300.324 kb on + strand, within MPMX26_00273at 300.350 kb on + strand, within MPMX26_00273at 300.369 kb on + strand, within MPMX26_00273at 300.369 kb on + strand, within MPMX26_00273at 300.404 kb on + strand, within MPMX26_00273at 300.404 kb on + strand, within MPMX26_00273at 300.404 kb on + strand, within MPMX26_00273at 300.538 kb on + strand, within MPMX26_00273at 300.602 kb on + strand, within MPMX26_00273at 300.602 kb on + strand, within MPMX26_00273at 300.628 kb on + strand, within MPMX26_00273at 300.654 kb on + strand, within MPMX26_00273at 300.661 kb on + strand, within MPMX26_00273at 300.661 kb on + strand, within MPMX26_00273at 300.678 kb on + strand, within MPMX26_00273at 300.693 kb on + strand, within MPMX26_00273at 300.706 kb on + strand, within MPMX26_00273at 300.706 kb on + strand, within MPMX26_00273at 300.706 kb on + strand, within MPMX26_00273at 300.706 kb on + strand, within MPMX26_00273at 300.758 kb on + strand, within MPMX26_00273at 300.762 kb on + strand, within MPMX26_00273at 300.781 kb on + strand, within MPMX26_00273at 300.781 kb on + strand, within MPMX26_00273at 300.781 kb on + strand, within MPMX26_00273at 300.801 kb on + strand, within MPMX26_00273at 300.801 kb on + strand, within MPMX26_00273at 300.801 kb on + strand, within MPMX26_00273at 300.806 kb on + strand, within MPMX26_00273at 300.846 kb on + strand, within MPMX26_00273at 300.847 kb on + strand, within MPMX26_00273at 300.854 kb on + strand, within MPMX26_00273at 300.907 kb on + strand, within MPMX26_00273at 300.926 kb on + strand, within MPMX26_00273at 300.961 kb on + strand, within MPMX26_00273at 301.006 kb on + strand, within MPMX26_00273at 301.033 kb on + strand, within MPMX26_00273at 301.192 kb on + strand, within MPMX26_00273at 301.207 kb on + strand, within MPMX26_00273at 301.290 kb on + strand, within MPMX26_00273at 301.290 kb on + strand, within MPMX26_00273at 301.290 kb on + strand, within MPMX26_00273at 301.336 kb on + strand, within MPMX26_00273at 301.350 kb on + strand, within MPMX26_00273at 301.363 kb on + strand, within MPMX26_00273at 301.386 kb on + strand, within MPMX26_00273at 301.395 kb on + strand, within MPMX26_00273at 301.486 kb on + strand, within MPMX26_00273at 301.537 kb on + strand, within MPMX26_00273at 301.573 kb on + strand, within MPMX26_00273at 301.626 kb on - strand, within MPMX26_00273at 301.684 kb on + strand, within MPMX26_00273at 301.684 kb on + strand, within MPMX26_00273at 301.726 kb on + strandat 301.726 kb on + strandat 301.726 kb on + strandat 301.731 kb on + strandat 301.731 kb on + strandat 301.767 kb on + strandat 301.767 kb on + strandat 301.798 kb on + strandat 301.798 kb on + strandat 301.836 kb on + strandat 301.836 kb on + strandat 301.836 kb on + strandat 301.977 kb on + strandat 302.119 kb on + strandat 302.119 kb on + strandat 302.119 kb on + strandat 302.148 kb on - strandat 302.359 kb on + strandat 302.367 kb on + strandat 302.502 kb on - strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.602 kb on + strandat 302.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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299,128 + MPMX26_00272 0.75 -1.3
299,254 + MPMX26_00272 0.78 -0.3
299,466 + MPMX26_00272 0.84 -1.3
299,470 + MPMX26_00272 0.84 -0.3
299,470 + MPMX26_00272 0.84 +0.7
299,470 + MPMX26_00272 0.84 +1.7
299,559 + MPMX26_00272 0.87 +1.1
299,730 + -0.7
299,797 + -0.3
299,849 + -0.3
299,871 + +0.1
299,905 + +1.7
299,921 + -0.9
299,924 + -0.7
299,924 + -0.8
299,924 + +1.7
299,975 + +0.1
300,119 + +0.8
300,129 + -0.3
300,143 - -0.3
300,186 + -0.7
300,186 + -1.9
300,186 + -1.0
300,186 + -0.7
300,271 + -1.5
300,281 + MPMX26_00273 0.10 -0.3
300,281 + MPMX26_00273 0.10 -0.3
300,283 + MPMX26_00273 0.10 -0.7
300,283 + MPMX26_00273 0.10 -2.0
300,286 + MPMX26_00273 0.10 -0.7
300,291 + MPMX26_00273 0.11 -0.5
300,291 + MPMX26_00273 0.11 +0.1
300,292 + MPMX26_00273 0.11 -0.6
300,302 + MPMX26_00273 0.11 -0.2
300,302 + MPMX26_00273 0.11 +0.7
300,302 + MPMX26_00273 0.11 -0.3
300,324 + MPMX26_00273 0.13 +0.5
300,350 + MPMX26_00273 0.14 -0.9
300,369 + MPMX26_00273 0.15 -0.7
300,369 + MPMX26_00273 0.15 -1.9
300,404 + MPMX26_00273 0.17 -1.5
300,404 + MPMX26_00273 0.17 +0.1
300,404 + MPMX26_00273 0.17 -0.3
300,538 + MPMX26_00273 0.24 -0.5
300,602 + MPMX26_00273 0.28 -1.5
300,602 + MPMX26_00273 0.28 -2.2
300,628 + MPMX26_00273 0.29 -1.2
300,654 + MPMX26_00273 0.31 -2.8
300,661 + MPMX26_00273 0.31 -1.3
300,661 + MPMX26_00273 0.31 -0.7
300,678 + MPMX26_00273 0.32 -0.2
300,693 + MPMX26_00273 0.33 -1.1
300,706 + MPMX26_00273 0.34 +0.2
300,706 + MPMX26_00273 0.34 -1.7
300,706 + MPMX26_00273 0.34 -0.7
300,706 + MPMX26_00273 0.34 -0.7
300,758 + MPMX26_00273 0.37 -0.3
300,762 + MPMX26_00273 0.37 -2.9
300,781 + MPMX26_00273 0.38 -1.8
300,781 + MPMX26_00273 0.38 -1.3
300,781 + MPMX26_00273 0.38 +0.3
300,801 + MPMX26_00273 0.39 -0.9
300,801 + MPMX26_00273 0.39 -0.9
300,801 + MPMX26_00273 0.39 -0.3
300,806 + MPMX26_00273 0.39 +0.7
300,846 + MPMX26_00273 0.41 -0.6
300,847 + MPMX26_00273 0.41 +0.7
300,854 + MPMX26_00273 0.42 +1.1
300,907 + MPMX26_00273 0.45 -1.5
300,926 + MPMX26_00273 0.46 +0.7
300,961 + MPMX26_00273 0.48 -0.5
301,006 + MPMX26_00273 0.50 +1.7
301,033 + MPMX26_00273 0.52 -2.1
301,192 + MPMX26_00273 0.61 -1.7
301,207 + MPMX26_00273 0.61 -1.6
301,290 + MPMX26_00273 0.66 -0.9
301,290 + MPMX26_00273 0.66 -0.7
301,290 + MPMX26_00273 0.66 -1.3
301,336 + MPMX26_00273 0.68 +1.2
301,350 + MPMX26_00273 0.69 +0.1
301,363 + MPMX26_00273 0.70 -1.5
301,386 + MPMX26_00273 0.71 +0.1
301,395 + MPMX26_00273 0.72 -3.5
301,486 + MPMX26_00273 0.77 -1.5
301,537 + MPMX26_00273 0.80 -0.7
301,573 + MPMX26_00273 0.82 -0.9
301,626 - MPMX26_00273 0.85 -0.3
301,684 + MPMX26_00273 0.88 -1.1
301,684 + MPMX26_00273 0.88 -0.3
301,726 + +0.3
301,726 + +0.1
301,726 + -1.1
301,731 + -1.6
301,731 + -1.5
301,767 + -0.3
301,767 + -0.8
301,798 + -2.4
301,798 + -0.6
301,836 + +0.1
301,836 + -0.9
301,836 + -1.1
301,977 + +0.6
302,119 + +0.8
302,119 + +0.1
302,119 + +0.5
302,148 - +0.4
302,359 + +0.1
302,367 + -0.1
302,502 - -0.2
302,602 + -0.5
302,602 + +0.2
302,602 + +0.1
302,602 + +0.5
302,602 + +0.7
302,602 + +0.1
302,602 + -0.9
302,602 + +0.9
302,602 + -0.6
302,602 + +1.1
302,602 + +0.0
302,610 - -1.1

Or see this region's nucleotide sequence