Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00271

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00269 and MPMX26_00270 are separated by 41 nucleotidesMPMX26_00270 and MPMX26_00271 are separated by 186 nucleotidesMPMX26_00271 and MPMX26_00272 overlap by 4 nucleotides MPMX26_00269: MPMX26_00269 - Polyphosphate:AMP phosphotransferase, at 290,517 to 291,938 _00269 MPMX26_00270: MPMX26_00270 - hypothetical protein, at 291,980 to 292,477 _00270 MPMX26_00271: MPMX26_00271 - RecBCD enzyme subunit RecC, at 292,664 to 296,356 _00271 MPMX26_00272: MPMX26_00272 - RecBCD enzyme subunit RecB, at 296,353 to 300,057 _00272 Position (kb) 292 293 294 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 291.823 kb on + strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.838 kb on + strandat 291.838 kb on + strandat 291.838 kb on + strandat 291.838 kb on + strandat 291.891 kb on + strandat 291.891 kb on + strandat 291.900 kb on + strandat 291.902 kb on + strandat 291.970 kb on - strandat 291.972 kb on - strandat 292.026 kb on - strandat 292.026 kb on - strandat 292.068 kb on - strand, within MPMX26_00270at 292.135 kb on - strand, within MPMX26_00270at 292.140 kb on - strand, within MPMX26_00270at 292.181 kb on - strand, within MPMX26_00270at 292.217 kb on - strand, within MPMX26_00270at 292.217 kb on - strand, within MPMX26_00270at 292.217 kb on - strand, within MPMX26_00270at 292.217 kb on - strand, within MPMX26_00270at 292.260 kb on - strand, within MPMX26_00270at 292.265 kb on - strand, within MPMX26_00270at 292.270 kb on - strand, within MPMX26_00270at 292.270 kb on - strand, within MPMX26_00270at 292.270 kb on - strand, within MPMX26_00270at 292.270 kb on - strand, within MPMX26_00270at 292.275 kb on - strand, within MPMX26_00270at 292.275 kb on - strand, within MPMX26_00270at 292.275 kb on - strand, within MPMX26_00270at 292.275 kb on - strand, within MPMX26_00270at 292.275 kb on - strand, within MPMX26_00270at 292.299 kb on - strand, within MPMX26_00270at 292.410 kb on - strand, within MPMX26_00270at 292.410 kb on - strand, within MPMX26_00270at 292.410 kb on - strand, within MPMX26_00270at 292.441 kb on - strandat 292.446 kb on - strandat 292.446 kb on - strandat 292.568 kb on + strandat 292.583 kb on + strandat 292.592 kb on + strandat 292.592 kb on + strandat 292.592 kb on + strandat 292.594 kb on + strandat 292.594 kb on + strandat 292.594 kb on + strandat 292.719 kb on + strandat 292.724 kb on + strandat 292.766 kb on + strandat 292.766 kb on + strandat 292.766 kb on + strandat 292.882 kb on + strandat 292.885 kb on + strandat 293.012 kb on + strandat 293.025 kb on + strandat 293.067 kb on + strand, within MPMX26_00271at 293.105 kb on + strand, within MPMX26_00271at 293.110 kb on + strand, within MPMX26_00271at 293.113 kb on + strand, within MPMX26_00271at 293.113 kb on + strand, within MPMX26_00271at 293.113 kb on + strand, within MPMX26_00271at 293.113 kb on + strand, within MPMX26_00271at 293.113 kb on + strand, within MPMX26_00271at 293.113 kb on + strand, within MPMX26_00271at 293.131 kb on + strand, within MPMX26_00271at 293.190 kb on + strand, within MPMX26_00271at 293.190 kb on + strand, within MPMX26_00271at 293.197 kb on + strand, within MPMX26_00271at 293.280 kb on + strand, within MPMX26_00271at 293.336 kb on + strand, within MPMX26_00271at 293.546 kb on + strand, within MPMX26_00271at 293.548 kb on + strand, within MPMX26_00271at 293.713 kb on + strand, within MPMX26_00271at 293.714 kb on + strand, within MPMX26_00271at 293.735 kb on + strand, within MPMX26_00271at 293.933 kb on + strand, within MPMX26_00271at 294.055 kb on + strand, within MPMX26_00271at 294.124 kb on + strand, within MPMX26_00271at 294.124 kb on + strand, within MPMX26_00271at 294.236 kb on + strand, within MPMX26_00271at 294.319 kb on + strand, within MPMX26_00271at 294.416 kb on + strand, within MPMX26_00271at 294.476 kb on + strand, within MPMX26_00271at 294.518 kb on + strand, within MPMX26_00271at 294.697 kb on + strand, within MPMX26_00271at 294.697 kb on + strand, within MPMX26_00271at 294.742 kb on + strand, within MPMX26_00271at 294.766 kb on + strand, within MPMX26_00271at 294.766 kb on + strand, within MPMX26_00271at 294.766 kb on + strand, within MPMX26_00271at 294.766 kb on + strand, within MPMX26_00271at 294.766 kb on + strand, within MPMX26_00271at 294.805 kb on + strand, within MPMX26_00271at 294.817 kb on + strand, within MPMX26_00271at 294.885 kb on + strand, within MPMX26_00271at 294.886 kb on + strand, within MPMX26_00271at 294.905 kb on + strand, within MPMX26_00271at 294.911 kb on + strand, within MPMX26_00271at 295.004 kb on + strand, within MPMX26_00271at 295.004 kb on + strand, within MPMX26_00271at 295.004 kb on + strand, within MPMX26_00271at 295.039 kb on + strand, within MPMX26_00271at 295.147 kb on + strand, within MPMX26_00271at 295.147 kb on + strand, within MPMX26_00271at 295.194 kb on + strand, within MPMX26_00271at 295.199 kb on + strand, within MPMX26_00271at 295.199 kb on + strand, within MPMX26_00271at 295.264 kb on + strand, within MPMX26_00271at 295.270 kb on + strand, within MPMX26_00271at 295.270 kb on + strand, within MPMX26_00271at 295.280 kb on + strand, within MPMX26_00271at 295.361 kb on + strand, within MPMX26_00271at 295.366 kb on + strand, within MPMX26_00271at 295.501 kb on + strand, within MPMX26_00271at 295.529 kb on + strand, within MPMX26_00271at 295.546 kb on + strand, within MPMX26_00271at 295.547 kb on + strand, within MPMX26_00271at 295.568 kb on + strand, within MPMX26_00271at 295.604 kb on + strand, within MPMX26_00271at 295.604 kb on + strand, within MPMX26_00271at 295.606 kb on + strand, within MPMX26_00271at 295.694 kb on + strand, within MPMX26_00271at 295.730 kb on + strand, within MPMX26_00271at 295.733 kb on + strand, within MPMX26_00271at 295.733 kb on + strand, within MPMX26_00271at 295.773 kb on + strand, within MPMX26_00271at 295.773 kb on + strand, within MPMX26_00271at 295.778 kb on + strand, within MPMX26_00271at 295.792 kb on + strand, within MPMX26_00271at 295.811 kb on + strand, within MPMX26_00271at 295.812 kb on + strand, within MPMX26_00271at 295.830 kb on + strand, within MPMX26_00271at 295.840 kb on + strand, within MPMX26_00271at 295.852 kb on + strand, within MPMX26_00271at 295.946 kb on + strand, within MPMX26_00271at 295.984 kb on + strand, within MPMX26_00271at 296.020 kb on + strandat 296.020 kb on + strandat 296.020 kb on + strandat 296.020 kb on + strandat 296.020 kb on + strandat 296.020 kb on + strandat 296.074 kb on + strandat 296.119 kb on + strandat 296.173 kb on + strandat 296.183 kb on + strandat 296.222 kb on + strandat 296.227 kb on + strandat 296.227 kb on + strandat 296.227 kb on + strandat 296.227 kb on + strandat 296.227 kb on + strandat 296.243 kb on + strandat 296.341 kb on + strandat 296.529 kb on + strandat 296.571 kb on + strandat 296.658 kb on + strandat 296.695 kb on + strandat 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.844 kb on + strand, within MPMX26_00272at 296.852 kb on - strand, within MPMX26_00272at 296.896 kb on + strand, within MPMX26_00272at 297.000 kb on + strand, within MPMX26_00272at 297.000 kb on + strand, within MPMX26_00272at 297.000 kb on + strand, within MPMX26_00272at 297.039 kb on + strand, within MPMX26_00272at 297.078 kb on + strand, within MPMX26_00272at 297.126 kb on + strand, within MPMX26_00272at 297.126 kb on + strand, within MPMX26_00272at 297.180 kb on + strand, within MPMX26_00272

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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291,823 + +0.7
291,833 + +2.2
291,833 + +0.3
291,833 + +0.1
291,833 + +0.5
291,833 + -0.1
291,838 + -0.1
291,838 + +0.9
291,838 + -0.3
291,838 + +0.4
291,891 + +0.3
291,891 + -0.6
291,900 + +1.7
291,902 + +1.4
291,970 - +1.1
291,972 - +0.1
292,026 - +0.1
292,026 - -0.0
292,068 - MPMX26_00270 0.18 +0.3
292,135 - MPMX26_00270 0.31 -0.5
292,140 - MPMX26_00270 0.32 +1.7
292,181 - MPMX26_00270 0.40 -0.3
292,217 - MPMX26_00270 0.48 -0.9
292,217 - MPMX26_00270 0.48 -0.1
292,217 - MPMX26_00270 0.48 -0.4
292,217 - MPMX26_00270 0.48 -0.7
292,260 - MPMX26_00270 0.56 +0.4
292,265 - MPMX26_00270 0.57 -0.8
292,270 - MPMX26_00270 0.58 -1.7
292,270 - MPMX26_00270 0.58 -0.0
292,270 - MPMX26_00270 0.58 -0.4
292,270 - MPMX26_00270 0.58 -0.0
292,275 - MPMX26_00270 0.59 +1.3
292,275 - MPMX26_00270 0.59 -1.3
292,275 - MPMX26_00270 0.59 +0.3
292,275 - MPMX26_00270 0.59 +0.2
292,275 - MPMX26_00270 0.59 -0.9
292,299 - MPMX26_00270 0.64 +0.4
292,410 - MPMX26_00270 0.86 -2.3
292,410 - MPMX26_00270 0.86 -0.1
292,410 - MPMX26_00270 0.86 -0.2
292,441 - +0.1
292,446 - +1.2
292,446 - -0.8
292,568 + +0.1
292,583 + -0.4
292,592 + +0.1
292,592 + -0.1
292,592 + -0.7
292,594 + +1.1
292,594 + +0.9
292,594 + -0.9
292,719 + -1.8
292,724 + -0.9
292,766 + -0.3
292,766 + +1.7
292,766 + +1.1
292,882 + -0.3
292,885 + -0.7
293,012 + +0.7
293,025 + -2.1
293,067 + MPMX26_00271 0.11 -0.9
293,105 + MPMX26_00271 0.12 +0.7
293,110 + MPMX26_00271 0.12 +0.7
293,113 + MPMX26_00271 0.12 -0.1
293,113 + MPMX26_00271 0.12 +0.1
293,113 + MPMX26_00271 0.12 +1.7
293,113 + MPMX26_00271 0.12 -0.3
293,113 + MPMX26_00271 0.12 -0.9
293,113 + MPMX26_00271 0.12 +1.1
293,131 + MPMX26_00271 0.13 -0.9
293,190 + MPMX26_00271 0.14 -0.7
293,190 + MPMX26_00271 0.14 -0.7
293,197 + MPMX26_00271 0.14 +0.1
293,280 + MPMX26_00271 0.17 -0.3
293,336 + MPMX26_00271 0.18 -2.8
293,546 + MPMX26_00271 0.24 +0.1
293,548 + MPMX26_00271 0.24 -0.9
293,713 + MPMX26_00271 0.28 -0.1
293,714 + MPMX26_00271 0.28 +0.7
293,735 + MPMX26_00271 0.29 -0.9
293,933 + MPMX26_00271 0.34 +0.7
294,055 + MPMX26_00271 0.38 -1.7
294,124 + MPMX26_00271 0.40 -0.3
294,124 + MPMX26_00271 0.40 -1.7
294,236 + MPMX26_00271 0.43 +1.7
294,319 + MPMX26_00271 0.45 -1.1
294,416 + MPMX26_00271 0.47 -1.1
294,476 + MPMX26_00271 0.49 -1.7
294,518 + MPMX26_00271 0.50 -0.7
294,697 + MPMX26_00271 0.55 +0.1
294,697 + MPMX26_00271 0.55 +0.1
294,742 + MPMX26_00271 0.56 +0.1
294,766 + MPMX26_00271 0.57 -0.3
294,766 + MPMX26_00271 0.57 -0.9
294,766 + MPMX26_00271 0.57 +1.7
294,766 + MPMX26_00271 0.57 -0.3
294,766 + MPMX26_00271 0.57 +2.2
294,805 + MPMX26_00271 0.58 +1.1
294,817 + MPMX26_00271 0.58 -0.9
294,885 + MPMX26_00271 0.60 -1.5
294,886 + MPMX26_00271 0.60 +0.7
294,905 + MPMX26_00271 0.61 -0.7
294,911 + MPMX26_00271 0.61 -0.9
295,004 + MPMX26_00271 0.63 +1.1
295,004 + MPMX26_00271 0.63 -1.3
295,004 + MPMX26_00271 0.63 +0.1
295,039 + MPMX26_00271 0.64 -0.3
295,147 + MPMX26_00271 0.67 +0.7
295,147 + MPMX26_00271 0.67 +0.7
295,194 + MPMX26_00271 0.69 -0.3
295,199 + MPMX26_00271 0.69 +0.7
295,199 + MPMX26_00271 0.69 +1.2
295,264 + MPMX26_00271 0.70 -0.7
295,270 + MPMX26_00271 0.71 -0.7
295,270 + MPMX26_00271 0.71 -0.7
295,280 + MPMX26_00271 0.71 -1.3
295,361 + MPMX26_00271 0.73 +0.7
295,366 + MPMX26_00271 0.73 -0.3
295,501 + MPMX26_00271 0.77 +0.7
295,529 + MPMX26_00271 0.78 -0.7
295,546 + MPMX26_00271 0.78 -0.9
295,547 + MPMX26_00271 0.78 -2.5
295,568 + MPMX26_00271 0.79 +0.7
295,604 + MPMX26_00271 0.80 +0.3
295,604 + MPMX26_00271 0.80 -0.3
295,606 + MPMX26_00271 0.80 +0.3
295,694 + MPMX26_00271 0.82 -1.5
295,730 + MPMX26_00271 0.83 +1.1
295,733 + MPMX26_00271 0.83 -1.3
295,733 + MPMX26_00271 0.83 +0.7
295,773 + MPMX26_00271 0.84 -0.5
295,773 + MPMX26_00271 0.84 -0.3
295,778 + MPMX26_00271 0.84 +0.1
295,792 + MPMX26_00271 0.85 -0.3
295,811 + MPMX26_00271 0.85 -1.1
295,812 + MPMX26_00271 0.85 +0.7
295,830 + MPMX26_00271 0.86 -0.7
295,840 + MPMX26_00271 0.86 -0.7
295,852 + MPMX26_00271 0.86 -0.8
295,946 + MPMX26_00271 0.89 -0.7
295,984 + MPMX26_00271 0.90 +0.7
296,020 + -0.9
296,020 + -1.3
296,020 + -0.9
296,020 + +0.1
296,020 + +0.1
296,020 + -2.1
296,074 + -0.3
296,119 + +0.7
296,173 + +0.7
296,183 + -0.9
296,222 + -0.1
296,227 + +0.1
296,227 + -1.1
296,227 + +2.7
296,227 + -0.9
296,227 + +0.9
296,243 + -0.9
296,341 + +0.2
296,529 + +0.1
296,571 + +0.1
296,658 + +1.7
296,695 + -0.3
296,844 + MPMX26_00272 0.13 -1.3
296,844 + MPMX26_00272 0.13 -0.3
296,844 + MPMX26_00272 0.13 -0.3
296,844 + MPMX26_00272 0.13 -0.5
296,844 + MPMX26_00272 0.13 -1.1
296,844 + MPMX26_00272 0.13 +0.1
296,844 + MPMX26_00272 0.13 +0.7
296,844 + MPMX26_00272 0.13 +0.1
296,844 + MPMX26_00272 0.13 -0.9
296,844 + MPMX26_00272 0.13 +0.7
296,844 + MPMX26_00272 0.13 -0.5
296,844 + MPMX26_00272 0.13 -0.5
296,844 + MPMX26_00272 0.13 +0.1
296,844 + MPMX26_00272 0.13 -1.1
296,852 - MPMX26_00272 0.13 +1.7
296,896 + MPMX26_00272 0.15 -0.9
297,000 + MPMX26_00272 0.17 +1.1
297,000 + MPMX26_00272 0.17 -1.1
297,000 + MPMX26_00272 0.17 +0.1
297,039 + MPMX26_00272 0.19 -1.3
297,078 + MPMX26_00272 0.20 +0.1
297,126 + MPMX26_00272 0.21 -0.3
297,126 + MPMX26_00272 0.21 -2.1
297,180 + MPMX26_00272 0.22 +0.7

Or see this region's nucleotide sequence