Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00252

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00247 and MPMX26_00248 are separated by 10 nucleotidesMPMX26_00248 and MPMX26_00249 are separated by 52 nucleotidesMPMX26_00249 and MPMX26_00250 are separated by 42 nucleotidesMPMX26_00250 and MPMX26_00251 are separated by 86 nucleotidesMPMX26_00251 and MPMX26_00252 are separated by 207 nucleotidesMPMX26_00252 and MPMX26_00253 are separated by 40 nucleotides MPMX26_00247: MPMX26_00247 - Triosephosphate isomerase, at 268,302 to 269,096 _00247 MPMX26_00248: MPMX26_00248 - Protein-export membrane protein SecG, at 269,107 to 269,436 _00248 MPMX26_00249: MPMX26_00249 - tRNA-Leu, at 269,489 to 269,573 _00249 MPMX26_00250: MPMX26_00250 - tRNA-Met, at 269,616 to 269,692 _00250 MPMX26_00251: MPMX26_00251 - tRNA-Met, at 269,779 to 269,855 _00251 MPMX26_00252: MPMX26_00252 - Ribosome maturation factor RimP, at 270,063 to 270,587 _00252 MPMX26_00253: MPMX26_00253 - Transcription termination/antitermination protein NusA, at 270,628 to 272,112 _00253 Position (kb) 270 271Strain fitness (log2 ratio) -2 -1 0 1 2at 269.100 kb on + strandat 269.107 kb on + strandat 269.146 kb on + strand, within MPMX26_00248at 269.146 kb on + strand, within MPMX26_00248at 269.146 kb on + strand, within MPMX26_00248at 269.146 kb on + strand, within MPMX26_00248at 269.146 kb on + strand, within MPMX26_00248at 269.159 kb on + strand, within MPMX26_00248at 269.159 kb on + strand, within MPMX26_00248at 269.163 kb on + strand, within MPMX26_00248at 269.178 kb on + strand, within MPMX26_00248at 269.178 kb on + strand, within MPMX26_00248at 269.178 kb on + strand, within MPMX26_00248at 269.178 kb on + strand, within MPMX26_00248at 269.178 kb on + strand, within MPMX26_00248at 269.180 kb on + strand, within MPMX26_00248at 269.185 kb on + strand, within MPMX26_00248at 269.193 kb on + strand, within MPMX26_00248at 269.232 kb on + strand, within MPMX26_00248at 269.239 kb on + strand, within MPMX26_00248at 269.256 kb on + strand, within MPMX26_00248at 269.278 kb on + strand, within MPMX26_00248at 269.305 kb on + strand, within MPMX26_00248at 269.306 kb on + strand, within MPMX26_00248at 269.312 kb on + strand, within MPMX26_00248at 269.337 kb on + strand, within MPMX26_00248at 269.337 kb on + strand, within MPMX26_00248at 269.363 kb on + strand, within MPMX26_00248at 269.363 kb on + strand, within MPMX26_00248at 269.365 kb on + strand, within MPMX26_00248at 269.365 kb on + strand, within MPMX26_00248at 269.365 kb on + strand, within MPMX26_00248at 269.365 kb on + strand, within MPMX26_00248at 269.365 kb on + strand, within MPMX26_00248at 269.365 kb on + strand, within MPMX26_00248at 269.365 kb on + strand, within MPMX26_00248at 269.365 kb on + strand, within MPMX26_00248at 269.365 kb on + strand, within MPMX26_00248at 269.378 kb on + strand, within MPMX26_00248at 269.575 kb on + strandat 269.704 kb on + strandat 269.704 kb on + strandat 269.956 kb on + strandat 269.959 kb on + strandat 269.992 kb on + strandat 269.998 kb on + strandat 269.999 kb on + strandat 269.999 kb on + strandat 269.999 kb on + strandat 269.999 kb on + strandat 269.999 kb on + strandat 270.005 kb on + strandat 270.011 kb on + strandat 270.016 kb on + strandat 270.016 kb on + strandat 270.016 kb on + strandat 270.025 kb on + strandat 270.161 kb on + strand, within MPMX26_00252at 270.222 kb on + strand, within MPMX26_00252at 270.267 kb on + strand, within MPMX26_00252at 270.267 kb on + strand, within MPMX26_00252at 270.267 kb on + strand, within MPMX26_00252at 270.317 kb on + strand, within MPMX26_00252at 270.444 kb on + strand, within MPMX26_00252at 270.481 kb on + strand, within MPMX26_00252at 270.481 kb on + strand, within MPMX26_00252at 270.503 kb on + strand, within MPMX26_00252

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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269,100 + +0.1
269,107 + +0.4
269,146 + MPMX26_00248 0.12 -0.5
269,146 + MPMX26_00248 0.12 +0.1
269,146 + MPMX26_00248 0.12 -0.2
269,146 + MPMX26_00248 0.12 +0.2
269,146 + MPMX26_00248 0.12 +0.3
269,159 + MPMX26_00248 0.16 -0.3
269,159 + MPMX26_00248 0.16 -0.5
269,163 + MPMX26_00248 0.17 -0.2
269,178 + MPMX26_00248 0.22 -0.2
269,178 + MPMX26_00248 0.22 -0.0
269,178 + MPMX26_00248 0.22 +0.2
269,178 + MPMX26_00248 0.22 -0.1
269,178 + MPMX26_00248 0.22 +0.0
269,180 + MPMX26_00248 0.22 -0.3
269,185 + MPMX26_00248 0.24 -0.1
269,193 + MPMX26_00248 0.26 -0.1
269,232 + MPMX26_00248 0.38 +0.2
269,239 + MPMX26_00248 0.40 +0.7
269,256 + MPMX26_00248 0.45 -0.1
269,278 + MPMX26_00248 0.52 -0.3
269,305 + MPMX26_00248 0.60 +0.7
269,306 + MPMX26_00248 0.60 -0.1
269,312 + MPMX26_00248 0.62 -0.7
269,337 + MPMX26_00248 0.70 +0.6
269,337 + MPMX26_00248 0.70 -0.3
269,363 + MPMX26_00248 0.78 +0.2
269,363 + MPMX26_00248 0.78 +0.1
269,365 + MPMX26_00248 0.78 +0.1
269,365 + MPMX26_00248 0.78 -1.4
269,365 + MPMX26_00248 0.78 -0.5
269,365 + MPMX26_00248 0.78 +0.5
269,365 + MPMX26_00248 0.78 -0.5
269,365 + MPMX26_00248 0.78 +0.0
269,365 + MPMX26_00248 0.78 -0.5
269,365 + MPMX26_00248 0.78 -0.6
269,365 + MPMX26_00248 0.78 +0.7
269,378 + MPMX26_00248 0.82 +0.1
269,575 + -0.7
269,704 + -1.4
269,704 + -0.2
269,956 + -1.5
269,959 + +0.3
269,992 + -0.8
269,998 + -0.5
269,999 + -2.3
269,999 + -0.4
269,999 + +0.2
269,999 + -1.1
269,999 + -1.4
270,005 + -1.8
270,011 + -0.5
270,016 + -0.6
270,016 + -0.1
270,016 + -1.0
270,025 + -1.7
270,161 + MPMX26_00252 0.19 -0.3
270,222 + MPMX26_00252 0.30 +0.1
270,267 + MPMX26_00252 0.39 +0.1
270,267 + MPMX26_00252 0.39 -0.7
270,267 + MPMX26_00252 0.39 -0.7
270,317 + MPMX26_00252 0.48 -0.3
270,444 + MPMX26_00252 0.73 +2.7
270,481 + MPMX26_00252 0.80 -0.9
270,481 + MPMX26_00252 0.80 +0.7
270,503 + MPMX26_00252 0.84 -0.3

Or see this region's nucleotide sequence