Experiment: UV exposure at 150J/m2 for 20 seconds
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00199 and MPMX26_00200 are separated by 98 nucleotides MPMX26_00200 and MPMX26_00201 are separated by 48 nucleotides MPMX26_00201 and MPMX26_00202 are separated by 37 nucleotides MPMX26_00202 and MPMX26_00203 are separated by 16 nucleotides MPMX26_00203 and MPMX26_00204 are separated by 160 nucleotides
MPMX26_00199: MPMX26_00199 - Anthranilate synthase component 1, at 213,651 to 215,144
_00199
MPMX26_00200: MPMX26_00200 - tRNA-Thr, at 215,243 to 215,318
_00200
MPMX26_00201: MPMX26_00201 - tRNA-Tyr, at 215,367 to 215,450
_00201
MPMX26_00202: MPMX26_00202 - tRNA-Gly, at 215,488 to 215,563
_00202
MPMX26_00203: MPMX26_00203 - tRNA-Thr, at 215,580 to 215,654
_00203
MPMX26_00204: MPMX26_00204 - Elongation factor Tu, at 215,815 to 217,005
_00204
Position (kb) 215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 214.598 kb on + strand, within MPMX26_00199 at 214.611 kb on + strand, within MPMX26_00199 at 214.611 kb on + strand, within MPMX26_00199 at 214.611 kb on + strand, within MPMX26_00199 at 214.611 kb on + strand, within MPMX26_00199 at 214.624 kb on + strand, within MPMX26_00199 at 214.637 kb on - strand, within MPMX26_00199 at 214.668 kb on + strand, within MPMX26_00199 at 214.723 kb on + strand, within MPMX26_00199 at 214.726 kb on + strand, within MPMX26_00199 at 214.727 kb on + strand, within MPMX26_00199 at 214.727 kb on + strand, within MPMX26_00199 at 214.727 kb on + strand, within MPMX26_00199 at 214.728 kb on + strand, within MPMX26_00199 at 214.728 kb on + strand, within MPMX26_00199 at 214.734 kb on + strand, within MPMX26_00199 at 214.762 kb on + strand, within MPMX26_00199 at 214.762 kb on + strand, within MPMX26_00199 at 214.791 kb on + strand, within MPMX26_00199 at 214.813 kb on + strand, within MPMX26_00199 at 214.822 kb on + strand, within MPMX26_00199 at 214.870 kb on + strand, within MPMX26_00199 at 214.872 kb on + strand, within MPMX26_00199 at 214.938 kb on + strand, within MPMX26_00199 at 215.027 kb on + strand at 215.027 kb on + strand at 215.027 kb on + strand at 215.027 kb on + strand at 215.027 kb on + strand at 215.027 kb on + strand at 215.027 kb on + strand at 215.027 kb on + strand at 215.027 kb on + strand at 215.027 kb on + strand at 215.027 kb on + strand at 215.032 kb on + strand at 215.037 kb on + strand at 215.051 kb on + strand at 215.102 kb on + strand at 215.102 kb on + strand at 215.102 kb on + strand at 215.102 kb on + strand at 215.592 kb on + strand, within MPMX26_00203 at 215.597 kb on + strand, within MPMX26_00203 at 215.597 kb on + strand, within MPMX26_00203 at 215.597 kb on + strand, within MPMX26_00203 at 215.602 kb on + strand, within MPMX26_00203 at 215.607 kb on + strand, within MPMX26_00203 at 215.607 kb on + strand, within MPMX26_00203 at 215.607 kb on + strand, within MPMX26_00203 at 215.611 kb on + strand, within MPMX26_00203 at 215.649 kb on + strand at 215.719 kb on + strand at 215.753 kb on + strand at 215.758 kb on + strand at 215.769 kb on + strand at 215.787 kb on + strand at 215.787 kb on + strand at 215.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds remove 214,598 + MPMX26_00199 0.63 -0.2 214,611 + MPMX26_00199 0.64 -0.4 214,611 + MPMX26_00199 0.64 -0.3 214,611 + MPMX26_00199 0.64 +0.1 214,611 + MPMX26_00199 0.64 -0.8 214,624 + MPMX26_00199 0.65 -0.0 214,637 - MPMX26_00199 0.66 -0.7 214,668 + MPMX26_00199 0.68 +0.1 214,723 + MPMX26_00199 0.72 +0.1 214,726 + MPMX26_00199 0.72 +0.0 214,727 + MPMX26_00199 0.72 -0.4 214,727 + MPMX26_00199 0.72 +0.7 214,727 + MPMX26_00199 0.72 +0.0 214,728 + MPMX26_00199 0.72 -0.2 214,728 + MPMX26_00199 0.72 +0.2 214,734 + MPMX26_00199 0.72 +0.2 214,762 + MPMX26_00199 0.74 -0.2 214,762 + MPMX26_00199 0.74 +0.5 214,791 + MPMX26_00199 0.76 +0.5 214,813 + MPMX26_00199 0.78 +0.1 214,822 + MPMX26_00199 0.78 +0.4 214,870 + MPMX26_00199 0.82 -0.2 214,872 + MPMX26_00199 0.82 -0.2 214,938 + MPMX26_00199 0.86 +0.2 215,027 + +0.7 215,027 + +0.1 215,027 + +0.6 215,027 + +0.2 215,027 + +0.3 215,027 + +0.2 215,027 + -0.3 215,027 + +0.2 215,027 + +0.2 215,027 + -0.3 215,027 + +0.1 215,032 + +0.2 215,037 + -0.5 215,051 + +0.3 215,102 + -0.2 215,102 + -0.7 215,102 + -0.0 215,102 + +0.3 215,592 + MPMX26_00203 0.16 -1.7 215,597 + MPMX26_00203 0.23 -1.6 215,597 + MPMX26_00203 0.23 -1.1 215,597 + MPMX26_00203 0.23 -3.0 215,602 + MPMX26_00203 0.29 -1.5 215,607 + MPMX26_00203 0.36 -2.2 215,607 + MPMX26_00203 0.36 -1.6 215,607 + MPMX26_00203 0.36 -2.3 215,611 + MPMX26_00203 0.41 -1.4 215,649 + -0.7 215,719 + -0.2 215,753 + +0.1 215,758 + -1.3 215,769 + -0.3 215,787 + -0.0 215,787 + -0.2 215,788 + -1.3
Or see this region's nucleotide sequence