Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00183

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00182 and MPMX26_00183 are separated by 99 nucleotidesMPMX26_00183 and MPMX26_00184 are separated by 529 nucleotidesMPMX26_00184 and MPMX26_00185 are separated by 29 nucleotides MPMX26_00182: MPMX26_00182 - Outer membrane protein TolC, at 196,858 to 198,210 _00182 MPMX26_00183: MPMX26_00183 - Phosphate-specific transport system accessory protein PhoU, at 198,310 to 199,032 _00183 MPMX26_00184: MPMX26_00184 - putative Fe(2+)-trafficking protein, at 199,562 to 199,834 _00184 MPMX26_00185: MPMX26_00185 - Argininosuccinate lyase, at 199,864 to 201,243 _00185 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1at 197.317 kb on + strand, within MPMX26_00182at 197.326 kb on + strand, within MPMX26_00182at 197.326 kb on + strand, within MPMX26_00182at 197.326 kb on + strand, within MPMX26_00182at 197.347 kb on + strand, within MPMX26_00182at 197.349 kb on - strand, within MPMX26_00182at 197.397 kb on + strand, within MPMX26_00182at 197.399 kb on + strand, within MPMX26_00182at 197.404 kb on + strand, within MPMX26_00182at 197.433 kb on + strand, within MPMX26_00182at 197.490 kb on + strand, within MPMX26_00182at 197.490 kb on + strand, within MPMX26_00182at 197.506 kb on + strand, within MPMX26_00182at 197.515 kb on + strand, within MPMX26_00182at 197.525 kb on + strand, within MPMX26_00182at 197.572 kb on + strand, within MPMX26_00182at 197.590 kb on + strand, within MPMX26_00182at 197.666 kb on + strand, within MPMX26_00182at 197.676 kb on + strand, within MPMX26_00182at 197.695 kb on + strand, within MPMX26_00182at 197.695 kb on + strand, within MPMX26_00182at 197.695 kb on + strand, within MPMX26_00182at 197.695 kb on + strand, within MPMX26_00182at 197.697 kb on + strand, within MPMX26_00182at 197.709 kb on + strand, within MPMX26_00182at 197.709 kb on + strand, within MPMX26_00182at 197.709 kb on + strand, within MPMX26_00182at 197.716 kb on + strand, within MPMX26_00182at 197.725 kb on + strand, within MPMX26_00182at 197.725 kb on + strand, within MPMX26_00182at 197.725 kb on + strand, within MPMX26_00182at 197.735 kb on + strand, within MPMX26_00182at 197.737 kb on + strand, within MPMX26_00182at 197.760 kb on + strand, within MPMX26_00182at 197.768 kb on + strand, within MPMX26_00182at 197.782 kb on + strand, within MPMX26_00182at 197.850 kb on + strand, within MPMX26_00182at 197.850 kb on + strand, within MPMX26_00182at 197.871 kb on + strand, within MPMX26_00182at 197.890 kb on + strand, within MPMX26_00182at 197.904 kb on + strand, within MPMX26_00182at 197.906 kb on + strand, within MPMX26_00182at 197.925 kb on + strand, within MPMX26_00182at 197.925 kb on + strand, within MPMX26_00182at 197.928 kb on - strand, within MPMX26_00182at 197.937 kb on + strand, within MPMX26_00182at 197.937 kb on + strand, within MPMX26_00182at 197.937 kb on + strand, within MPMX26_00182at 197.937 kb on + strand, within MPMX26_00182at 197.942 kb on + strand, within MPMX26_00182at 197.942 kb on + strand, within MPMX26_00182at 197.952 kb on + strand, within MPMX26_00182at 197.987 kb on + strand, within MPMX26_00182at 198.006 kb on + strand, within MPMX26_00182at 198.006 kb on + strand, within MPMX26_00182at 198.041 kb on + strand, within MPMX26_00182at 198.066 kb on + strand, within MPMX26_00182at 198.066 kb on + strand, within MPMX26_00182at 198.066 kb on + strand, within MPMX26_00182at 198.066 kb on + strand, within MPMX26_00182at 198.106 kb on + strandat 198.110 kb on + strandat 198.120 kb on + strandat 198.120 kb on + strandat 198.120 kb on + strandat 198.156 kb on + strandat 198.186 kb on + strandat 198.318 kb on + strandat 198.328 kb on + strandat 198.374 kb on + strandat 198.404 kb on + strand, within MPMX26_00183at 198.444 kb on + strand, within MPMX26_00183at 198.444 kb on + strand, within MPMX26_00183at 198.454 kb on + strand, within MPMX26_00183at 198.493 kb on + strand, within MPMX26_00183at 198.532 kb on + strand, within MPMX26_00183at 198.548 kb on + strand, within MPMX26_00183at 198.563 kb on + strand, within MPMX26_00183at 198.573 kb on + strand, within MPMX26_00183at 198.573 kb on + strand, within MPMX26_00183at 198.622 kb on + strand, within MPMX26_00183at 198.652 kb on + strand, within MPMX26_00183at 198.682 kb on + strand, within MPMX26_00183at 198.687 kb on + strand, within MPMX26_00183at 198.701 kb on + strand, within MPMX26_00183at 198.720 kb on + strand, within MPMX26_00183at 198.762 kb on + strand, within MPMX26_00183at 198.762 kb on + strand, within MPMX26_00183at 198.762 kb on + strand, within MPMX26_00183at 198.762 kb on + strand, within MPMX26_00183at 198.762 kb on + strand, within MPMX26_00183at 198.762 kb on + strand, within MPMX26_00183at 198.767 kb on + strand, within MPMX26_00183at 198.767 kb on + strand, within MPMX26_00183at 198.772 kb on + strand, within MPMX26_00183at 198.772 kb on + strand, within MPMX26_00183at 198.777 kb on + strand, within MPMX26_00183at 198.790 kb on + strand, within MPMX26_00183at 198.815 kb on + strand, within MPMX26_00183at 198.833 kb on + strand, within MPMX26_00183at 198.833 kb on + strand, within MPMX26_00183at 198.833 kb on + strand, within MPMX26_00183at 198.833 kb on + strand, within MPMX26_00183at 198.833 kb on + strand, within MPMX26_00183at 198.833 kb on + strand, within MPMX26_00183at 198.833 kb on + strand, within MPMX26_00183at 198.833 kb on + strand, within MPMX26_00183at 198.894 kb on + strand, within MPMX26_00183at 198.911 kb on + strand, within MPMX26_00183at 198.911 kb on + strand, within MPMX26_00183at 198.980 kb on + strandat 198.985 kb on + strandat 198.985 kb on + strandat 198.985 kb on + strandat 199.004 kb on + strandat 199.018 kb on + strandat 199.026 kb on + strandat 199.026 kb on + strandat 199.086 kb on - strandat 199.120 kb on - strandat 199.120 kb on - strandat 199.188 kb on - strandat 199.354 kb on - strandat 199.414 kb on - strandat 199.538 kb on + strandat 199.546 kb on - strandat 199.546 kb on - strandat 199.546 kb on - strandat 199.546 kb on - strandat 199.546 kb on - strandat 199.546 kb on - strandat 199.690 kb on + strand, within MPMX26_00184at 199.695 kb on + strand, within MPMX26_00184at 199.698 kb on - strand, within MPMX26_00184at 199.702 kb on + strand, within MPMX26_00184at 199.702 kb on - strand, within MPMX26_00184at 199.702 kb on - strand, within MPMX26_00184at 199.702 kb on - strand, within MPMX26_00184at 199.703 kb on - strand, within MPMX26_00184at 199.729 kb on - strand, within MPMX26_00184at 199.756 kb on - strand, within MPMX26_00184at 199.765 kb on - strand, within MPMX26_00184at 199.772 kb on - strand, within MPMX26_00184at 199.788 kb on - strand, within MPMX26_00184at 199.908 kb on - strandat 199.908 kb on - strandat 199.918 kb on - strandat 199.929 kb on - strandat 200.005 kb on - strand, within MPMX26_00185at 200.005 kb on - strand, within MPMX26_00185at 200.005 kb on - strand, within MPMX26_00185at 200.015 kb on - strand, within MPMX26_00185at 200.015 kb on - strand, within MPMX26_00185at 200.015 kb on - strand, within MPMX26_00185

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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197,317 + MPMX26_00182 0.34 +0.8
197,326 + MPMX26_00182 0.35 -0.1
197,326 + MPMX26_00182 0.35 +1.0
197,326 + MPMX26_00182 0.35 -0.8
197,347 + MPMX26_00182 0.36 -0.3
197,349 - MPMX26_00182 0.36 +0.2
197,397 + MPMX26_00182 0.40 -0.8
197,399 + MPMX26_00182 0.40 +0.5
197,404 + MPMX26_00182 0.40 +0.4
197,433 + MPMX26_00182 0.42 -0.1
197,490 + MPMX26_00182 0.47 +0.4
197,490 + MPMX26_00182 0.47 +0.5
197,506 + MPMX26_00182 0.48 -0.6
197,515 + MPMX26_00182 0.49 -0.4
197,525 + MPMX26_00182 0.49 -0.7
197,572 + MPMX26_00182 0.53 -3.0
197,590 + MPMX26_00182 0.54 +0.4
197,666 + MPMX26_00182 0.60 +0.8
197,676 + MPMX26_00182 0.60 -0.4
197,695 + MPMX26_00182 0.62 +0.1
197,695 + MPMX26_00182 0.62 +0.2
197,695 + MPMX26_00182 0.62 +0.3
197,695 + MPMX26_00182 0.62 -0.5
197,697 + MPMX26_00182 0.62 -0.2
197,709 + MPMX26_00182 0.63 +0.5
197,709 + MPMX26_00182 0.63 +0.2
197,709 + MPMX26_00182 0.63 +0.3
197,716 + MPMX26_00182 0.63 -0.3
197,725 + MPMX26_00182 0.64 +0.2
197,725 + MPMX26_00182 0.64 +0.2
197,725 + MPMX26_00182 0.64 -0.3
197,735 + MPMX26_00182 0.65 -0.1
197,737 + MPMX26_00182 0.65 +0.2
197,760 + MPMX26_00182 0.67 +0.3
197,768 + MPMX26_00182 0.67 +0.7
197,782 + MPMX26_00182 0.68 +0.6
197,850 + MPMX26_00182 0.73 -0.3
197,850 + MPMX26_00182 0.73 -1.0
197,871 + MPMX26_00182 0.75 -0.1
197,890 + MPMX26_00182 0.76 +0.3
197,904 + MPMX26_00182 0.77 -0.1
197,906 + MPMX26_00182 0.77 -0.2
197,925 + MPMX26_00182 0.79 -0.1
197,925 + MPMX26_00182 0.79 -0.1
197,928 - MPMX26_00182 0.79 +1.3
197,937 + MPMX26_00182 0.80 -1.4
197,937 + MPMX26_00182 0.80 +0.6
197,937 + MPMX26_00182 0.80 +1.1
197,937 + MPMX26_00182 0.80 +0.3
197,942 + MPMX26_00182 0.80 -1.3
197,942 + MPMX26_00182 0.80 -0.6
197,952 + MPMX26_00182 0.81 +0.4
197,987 + MPMX26_00182 0.83 -0.7
198,006 + MPMX26_00182 0.85 +0.5
198,006 + MPMX26_00182 0.85 +0.1
198,041 + MPMX26_00182 0.87 +0.9
198,066 + MPMX26_00182 0.89 +0.1
198,066 + MPMX26_00182 0.89 -0.7
198,066 + MPMX26_00182 0.89 +0.9
198,066 + MPMX26_00182 0.89 -0.1
198,106 + +0.0
198,110 + +0.3
198,120 + +0.2
198,120 + -0.2
198,120 + +0.6
198,156 + +0.1
198,186 + -0.1
198,318 + +0.9
198,328 + -1.5
198,374 + +0.1
198,404 + MPMX26_00183 0.13 +1.7
198,444 + MPMX26_00183 0.19 +0.1
198,444 + MPMX26_00183 0.19 -0.7
198,454 + MPMX26_00183 0.20 -1.7
198,493 + MPMX26_00183 0.25 -2.1
198,532 + MPMX26_00183 0.31 -1.1
198,548 + MPMX26_00183 0.33 -1.1
198,563 + MPMX26_00183 0.35 -0.3
198,573 + MPMX26_00183 0.36 -1.1
198,573 + MPMX26_00183 0.36 -1.5
198,622 + MPMX26_00183 0.43 -0.7
198,652 + MPMX26_00183 0.47 -1.9
198,682 + MPMX26_00183 0.51 +1.1
198,687 + MPMX26_00183 0.52 -1.1
198,701 + MPMX26_00183 0.54 -0.1
198,720 + MPMX26_00183 0.57 -0.9
198,762 + MPMX26_00183 0.63 +1.7
198,762 + MPMX26_00183 0.63 +0.1
198,762 + MPMX26_00183 0.63 -2.0
198,762 + MPMX26_00183 0.63 -1.3
198,762 + MPMX26_00183 0.63 -1.1
198,762 + MPMX26_00183 0.63 -2.0
198,767 + MPMX26_00183 0.63 -0.9
198,767 + MPMX26_00183 0.63 +0.1
198,772 + MPMX26_00183 0.64 +1.1
198,772 + MPMX26_00183 0.64 -2.1
198,777 + MPMX26_00183 0.65 -1.1
198,790 + MPMX26_00183 0.66 -0.9
198,815 + MPMX26_00183 0.70 -0.1
198,833 + MPMX26_00183 0.72 -0.9
198,833 + MPMX26_00183 0.72 -0.3
198,833 + MPMX26_00183 0.72 -0.7
198,833 + MPMX26_00183 0.72 -0.9
198,833 + MPMX26_00183 0.72 +0.7
198,833 + MPMX26_00183 0.72 -1.5
198,833 + MPMX26_00183 0.72 -0.9
198,833 + MPMX26_00183 0.72 +0.7
198,894 + MPMX26_00183 0.81 +1.7
198,911 + MPMX26_00183 0.83 +0.1
198,911 + MPMX26_00183 0.83 +0.7
198,980 + -0.3
198,985 + -1.4
198,985 + +0.1
198,985 + -2.0
199,004 + +0.2
199,018 + -0.9
199,026 + +0.2
199,026 + +0.2
199,086 - +0.8
199,120 - -0.3
199,120 - +1.0
199,188 - +0.3
199,354 - +0.0
199,414 - -0.0
199,538 + +1.2
199,546 - -0.0
199,546 - +0.3
199,546 - +0.7
199,546 - +0.2
199,546 - +0.2
199,546 - -1.1
199,690 + MPMX26_00184 0.47 +0.0
199,695 + MPMX26_00184 0.49 -0.2
199,698 - MPMX26_00184 0.50 -2.8
199,702 + MPMX26_00184 0.51 +0.1
199,702 - MPMX26_00184 0.51 +0.2
199,702 - MPMX26_00184 0.51 -0.1
199,702 - MPMX26_00184 0.51 -0.1
199,703 - MPMX26_00184 0.52 -0.0
199,729 - MPMX26_00184 0.61 -0.3
199,756 - MPMX26_00184 0.71 -0.5
199,765 - MPMX26_00184 0.74 +0.2
199,772 - MPMX26_00184 0.77 +0.4
199,788 - MPMX26_00184 0.83 +0.4
199,908 - -0.1
199,908 - -0.3
199,918 - +0.3
199,929 - -0.7
200,005 - MPMX26_00185 0.10 -0.8
200,005 - MPMX26_00185 0.10 -1.1
200,005 - MPMX26_00185 0.10 -1.0
200,015 - MPMX26_00185 0.11 +0.4
200,015 - MPMX26_00185 0.11 -1.4
200,015 - MPMX26_00185 0.11 +0.4

Or see this region's nucleotide sequence