Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00056

Experiment: UV exposure at 150J/m2 for 20 seconds

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00055 and MPMX26_00056 overlap by 4 nucleotidesMPMX26_00056 and MPMX26_00057 overlap by 8 nucleotides MPMX26_00055: MPMX26_00055 - hypothetical protein, at 60,444 to 61,571 _00055 MPMX26_00056: MPMX26_00056 - Putative glycosyltransferase EpsF, at 61,568 to 62,689 _00056 MPMX26_00057: MPMX26_00057 - hypothetical protein, at 62,682 to 63,815 _00057 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1at 60.610 kb on + strand, within MPMX26_00055at 60.611 kb on + strand, within MPMX26_00055at 60.620 kb on + strand, within MPMX26_00055at 60.635 kb on + strand, within MPMX26_00055at 60.651 kb on + strand, within MPMX26_00055at 60.655 kb on + strand, within MPMX26_00055at 60.655 kb on + strand, within MPMX26_00055at 60.655 kb on + strand, within MPMX26_00055at 60.673 kb on - strand, within MPMX26_00055at 60.734 kb on + strand, within MPMX26_00055at 60.734 kb on + strand, within MPMX26_00055at 60.734 kb on + strand, within MPMX26_00055at 60.734 kb on + strand, within MPMX26_00055at 60.734 kb on + strand, within MPMX26_00055at 60.734 kb on + strand, within MPMX26_00055at 60.734 kb on + strand, within MPMX26_00055at 60.734 kb on + strand, within MPMX26_00055at 60.734 kb on + strand, within MPMX26_00055at 60.748 kb on + strand, within MPMX26_00055at 60.748 kb on + strand, within MPMX26_00055at 60.798 kb on + strand, within MPMX26_00055at 60.807 kb on + strand, within MPMX26_00055at 60.808 kb on + strand, within MPMX26_00055at 60.901 kb on + strand, within MPMX26_00055at 60.918 kb on + strand, within MPMX26_00055at 60.918 kb on + strand, within MPMX26_00055at 60.971 kb on + strand, within MPMX26_00055at 61.052 kb on + strand, within MPMX26_00055at 61.112 kb on + strand, within MPMX26_00055at 61.185 kb on + strand, within MPMX26_00055at 61.435 kb on + strand, within MPMX26_00055at 61.438 kb on + strand, within MPMX26_00055at 61.438 kb on + strand, within MPMX26_00055at 61.537 kb on + strandat 61.537 kb on + strandat 61.537 kb on + strandat 61.596 kb on + strandat 61.691 kb on + strand, within MPMX26_00056at 61.711 kb on + strand, within MPMX26_00056at 61.826 kb on + strand, within MPMX26_00056at 61.920 kb on + strand, within MPMX26_00056at 61.920 kb on + strand, within MPMX26_00056at 61.920 kb on + strand, within MPMX26_00056at 61.920 kb on + strand, within MPMX26_00056at 61.928 kb on - strand, within MPMX26_00056at 61.947 kb on + strand, within MPMX26_00056at 61.997 kb on + strand, within MPMX26_00056at 61.997 kb on + strand, within MPMX26_00056at 62.007 kb on + strand, within MPMX26_00056at 62.046 kb on + strand, within MPMX26_00056at 62.082 kb on + strand, within MPMX26_00056at 62.082 kb on + strand, within MPMX26_00056at 62.170 kb on + strand, within MPMX26_00056at 62.237 kb on + strand, within MPMX26_00056at 62.288 kb on + strand, within MPMX26_00056at 62.379 kb on + strand, within MPMX26_00056at 62.422 kb on + strand, within MPMX26_00056at 62.452 kb on + strand, within MPMX26_00056at 62.454 kb on + strand, within MPMX26_00056at 62.475 kb on + strand, within MPMX26_00056at 62.475 kb on + strand, within MPMX26_00056at 62.475 kb on + strand, within MPMX26_00056at 62.475 kb on + strand, within MPMX26_00056at 62.482 kb on + strand, within MPMX26_00056at 62.585 kb on + strandat 62.623 kb on + strandat 62.953 kb on + strand, within MPMX26_00057at 62.953 kb on + strand, within MPMX26_00057at 62.953 kb on + strand, within MPMX26_00057at 62.960 kb on - strand, within MPMX26_00057at 62.961 kb on - strand, within MPMX26_00057at 62.962 kb on - strand, within MPMX26_00057at 63.111 kb on + strand, within MPMX26_00057at 63.111 kb on + strand, within MPMX26_00057at 63.111 kb on + strand, within MPMX26_00057at 63.111 kb on + strand, within MPMX26_00057at 63.111 kb on + strand, within MPMX26_00057at 63.111 kb on + strand, within MPMX26_00057at 63.111 kb on + strand, within MPMX26_00057at 63.235 kb on + strand, within MPMX26_00057at 63.284 kb on + strand, within MPMX26_00057at 63.320 kb on + strand, within MPMX26_00057at 63.412 kb on + strand, within MPMX26_00057at 63.412 kb on + strand, within MPMX26_00057at 63.412 kb on + strand, within MPMX26_00057at 63.420 kb on - strand, within MPMX26_00057at 63.451 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.473 kb on + strand, within MPMX26_00057at 63.481 kb on - strand, within MPMX26_00057at 63.503 kb on + strand, within MPMX26_00057at 63.503 kb on + strand, within MPMX26_00057at 63.511 kb on - strand, within MPMX26_00057at 63.672 kb on + strand, within MPMX26_00057

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
remove
60,610 + MPMX26_00055 0.15 -1.5
60,611 + MPMX26_00055 0.15 -1.3
60,620 + MPMX26_00055 0.16 -1.7
60,635 + MPMX26_00055 0.17 -0.7
60,651 + MPMX26_00055 0.18 -0.8
60,655 + MPMX26_00055 0.19 -1.1
60,655 + MPMX26_00055 0.19 -2.2
60,655 + MPMX26_00055 0.19 +0.1
60,673 - MPMX26_00055 0.20 -0.9
60,734 + MPMX26_00055 0.26 -0.3
60,734 + MPMX26_00055 0.26 -0.9
60,734 + MPMX26_00055 0.26 -0.3
60,734 + MPMX26_00055 0.26 -0.8
60,734 + MPMX26_00055 0.26 -0.6
60,734 + MPMX26_00055 0.26 -0.6
60,734 + MPMX26_00055 0.26 -0.8
60,734 + MPMX26_00055 0.26 -0.8
60,734 + MPMX26_00055 0.26 -1.9
60,748 + MPMX26_00055 0.27 -0.3
60,748 + MPMX26_00055 0.27 -2.3
60,798 + MPMX26_00055 0.31 -1.5
60,807 + MPMX26_00055 0.32 -2.2
60,808 + MPMX26_00055 0.32 -1.6
60,901 + MPMX26_00055 0.41 -1.7
60,918 + MPMX26_00055 0.42 +0.7
60,918 + MPMX26_00055 0.42 +0.6
60,971 + MPMX26_00055 0.47 -1.2
61,052 + MPMX26_00055 0.54 +0.7
61,112 + MPMX26_00055 0.59 -1.6
61,185 + MPMX26_00055 0.66 -0.3
61,435 + MPMX26_00055 0.88 -0.7
61,438 + MPMX26_00055 0.88 -1.3
61,438 + MPMX26_00055 0.88 -2.0
61,537 + -1.5
61,537 + -0.3
61,537 + -1.8
61,596 + -0.2
61,691 + MPMX26_00056 0.11 +0.3
61,711 + MPMX26_00056 0.13 -0.5
61,826 + MPMX26_00056 0.23 +0.0
61,920 + MPMX26_00056 0.31 -1.4
61,920 + MPMX26_00056 0.31 -0.1
61,920 + MPMX26_00056 0.31 -0.7
61,920 + MPMX26_00056 0.31 -0.7
61,928 - MPMX26_00056 0.32 -0.7
61,947 + MPMX26_00056 0.34 -0.8
61,997 + MPMX26_00056 0.38 -1.8
61,997 + MPMX26_00056 0.38 -0.9
62,007 + MPMX26_00056 0.39 -0.0
62,046 + MPMX26_00056 0.43 -0.5
62,082 + MPMX26_00056 0.46 -0.0
62,082 + MPMX26_00056 0.46 -0.1
62,170 + MPMX26_00056 0.54 -1.0
62,237 + MPMX26_00056 0.60 -1.2
62,288 + MPMX26_00056 0.64 -2.1
62,379 + MPMX26_00056 0.72 -1.5
62,422 + MPMX26_00056 0.76 -1.2
62,452 + MPMX26_00056 0.79 +0.2
62,454 + MPMX26_00056 0.79 -0.7
62,475 + MPMX26_00056 0.81 +0.2
62,475 + MPMX26_00056 0.81 -0.5
62,475 + MPMX26_00056 0.81 -1.3
62,475 + MPMX26_00056 0.81 -0.0
62,482 + MPMX26_00056 0.81 -1.2
62,585 + -1.5
62,623 + -1.6
62,953 + MPMX26_00057 0.24 -0.1
62,953 + MPMX26_00057 0.24 +0.4
62,953 + MPMX26_00057 0.24 +0.4
62,960 - MPMX26_00057 0.25 -0.7
62,961 - MPMX26_00057 0.25 -0.1
62,962 - MPMX26_00057 0.25 +0.7
63,111 + MPMX26_00057 0.38 -0.4
63,111 + MPMX26_00057 0.38 +0.0
63,111 + MPMX26_00057 0.38 +0.8
63,111 + MPMX26_00057 0.38 +0.4
63,111 + MPMX26_00057 0.38 -1.6
63,111 + MPMX26_00057 0.38 -0.8
63,111 + MPMX26_00057 0.38 +0.2
63,235 + MPMX26_00057 0.49 -2.5
63,284 + MPMX26_00057 0.53 -0.2
63,320 + MPMX26_00057 0.56 +0.4
63,412 + MPMX26_00057 0.64 +0.2
63,412 + MPMX26_00057 0.64 +0.4
63,412 + MPMX26_00057 0.64 +0.1
63,420 - MPMX26_00057 0.65 +0.7
63,451 + MPMX26_00057 0.68 -0.2
63,473 + MPMX26_00057 0.70 -0.1
63,473 + MPMX26_00057 0.70 +0.3
63,473 + MPMX26_00057 0.70 -0.0
63,473 + MPMX26_00057 0.70 -0.7
63,473 + MPMX26_00057 0.70 +0.1
63,473 + MPMX26_00057 0.70 -0.0
63,473 + MPMX26_00057 0.70 +0.2
63,473 + MPMX26_00057 0.70 +0.3
63,473 + MPMX26_00057 0.70 +0.3
63,473 + MPMX26_00057 0.70 -0.0
63,481 - MPMX26_00057 0.70 +1.4
63,503 + MPMX26_00057 0.72 +0.2
63,503 + MPMX26_00057 0.72 +0.3
63,511 - MPMX26_00057 0.73 -0.4
63,672 + MPMX26_00057 0.87 -0.4

Or see this region's nucleotide sequence