Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06255

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06254 and MPMX19_06255 are separated by 680 nucleotidesMPMX19_06255 and MPMX19_06256 are separated by 857 nucleotides MPMX19_06254: MPMX19_06254 - hypothetical protein, at 4,249 to 6,270 _06254 MPMX19_06255: MPMX19_06255 - hypothetical protein, at 6,951 to 8,183 _06255 MPMX19_06256: MPMX19_06256 - hypothetical protein, at 9,041 to 10,345 _06256 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5.989 kb on + strand, within MPMX19_06254at 6.045 kb on - strand, within MPMX19_06254at 6.358 kb on - strandat 6.358 kb on - strandat 6.359 kb on + strandat 6.360 kb on - strandat 6.367 kb on + strandat 6.367 kb on + strandat 6.368 kb on - strandat 6.374 kb on + strandat 6.374 kb on + strandat 6.375 kb on - strandat 6.380 kb on + strandat 6.388 kb on + strandat 6.389 kb on - strandat 6.393 kb on + strandat 6.393 kb on + strandat 6.393 kb on + strandat 6.393 kb on + strandat 6.393 kb on + strandat 6.393 kb on + strandat 6.393 kb on + strandat 6.394 kb on - strandat 6.394 kb on - strandat 6.394 kb on - strandat 6.394 kb on - strandat 6.394 kb on - strandat 6.394 kb on - strandat 6.394 kb on - strandat 6.394 kb on - strandat 6.394 kb on - strandat 6.394 kb on - strandat 6.396 kb on + strandat 6.396 kb on + strandat 6.396 kb on + strandat 6.396 kb on + strandat 6.396 kb on + strandat 6.396 kb on + strandat 6.397 kb on - strandat 6.397 kb on - strandat 6.397 kb on - strandat 6.397 kb on - strandat 6.397 kb on - strandat 6.401 kb on + strandat 6.401 kb on + strandat 6.401 kb on + strandat 6.402 kb on - strandat 6.402 kb on - strandat 6.402 kb on - strandat 6.409 kb on + strandat 6.513 kb on + strandat 6.514 kb on - strandat 6.661 kb on + strandat 6.661 kb on + strandat 6.661 kb on + strandat 6.661 kb on + strandat 6.662 kb on - strandat 6.662 kb on - strandat 6.662 kb on - strandat 6.662 kb on - strandat 6.662 kb on - strandat 6.662 kb on - strandat 6.662 kb on - strandat 6.736 kb on + strandat 6.752 kb on - strandat 6.825 kb on - strandat 6.850 kb on + strandat 6.850 kb on + strandat 6.850 kb on + strandat 6.850 kb on + strandat 6.850 kb on + strandat 6.851 kb on - strandat 6.896 kb on + strandat 6.896 kb on + strandat 6.897 kb on - strandat 6.897 kb on - strandat 6.897 kb on - strandat 7.068 kb on + strandat 7.068 kb on + strandat 7.068 kb on + strandat 7.068 kb on + strandat 7.068 kb on + strandat 7.068 kb on + strandat 7.068 kb on + strandat 7.068 kb on + strandat 7.068 kb on + strandat 7.069 kb on - strandat 7.069 kb on - strandat 7.069 kb on - strandat 7.069 kb on - strandat 7.069 kb on - strandat 7.069 kb on - strandat 7.069 kb on - strandat 7.069 kb on - strandat 7.069 kb on - strandat 7.080 kb on + strand, within MPMX19_06255at 7.121 kb on + strand, within MPMX19_06255at 7.490 kb on + strand, within MPMX19_06255at 7.490 kb on + strand, within MPMX19_06255at 7.491 kb on - strand, within MPMX19_06255at 7.491 kb on - strand, within MPMX19_06255at 7.491 kb on - strand, within MPMX19_06255at 7.644 kb on + strand, within MPMX19_06255at 7.644 kb on + strand, within MPMX19_06255at 7.644 kb on + strand, within MPMX19_06255at 7.644 kb on + strand, within MPMX19_06255at 7.645 kb on - strand, within MPMX19_06255at 7.645 kb on - strand, within MPMX19_06255at 7.789 kb on - strand, within MPMX19_06255at 7.815 kb on + strand, within MPMX19_06255at 7.816 kb on - strand, within MPMX19_06255at 7.980 kb on + strand, within MPMX19_06255at 7.980 kb on + strand, within MPMX19_06255at 7.981 kb on - strand, within MPMX19_06255at 8.112 kb on - strandat 8.112 kb on - strandat 8.112 kb on - strandat 8.112 kb on - strandat 8.112 kb on - strandat 8.112 kb on - strandat 8.112 kb on - strandat 8.112 kb on - strandat 8.112 kb on - strandat 8.314 kb on - strandat 8.355 kb on + strandat 8.355 kb on + strandat 8.355 kb on + strandat 8.355 kb on + strandat 8.355 kb on + strandat 8.356 kb on - strandat 8.356 kb on - strandat 8.356 kb on - strandat 8.356 kb on - strandat 8.356 kb on - strandat 8.356 kb on - strandat 8.356 kb on - strandat 8.419 kb on + strandat 8.419 kb on + strandat 8.420 kb on - strandat 8.497 kb on + strandat 8.498 kb on - strandat 8.616 kb on - strandat 8.668 kb on + strandat 8.669 kb on - strandat 8.813 kb on + strandat 8.814 kb on - strandat 8.814 kb on - strandat 8.916 kb on + strandat 8.916 kb on + strandat 8.917 kb on - strandat 8.917 kb on - strandat 8.933 kb on + strandat 8.970 kb on + strandat 8.971 kb on - strandat 8.971 kb on - strandat 8.971 kb on - strandat 8.971 kb on - strandat 8.971 kb on - strandat 8.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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5,989 + MPMX19_06254 0.86 -0.8
6,045 - MPMX19_06254 0.89 -0.2
6,358 - +0.6
6,358 - +1.1
6,359 + +0.5
6,360 - -0.4
6,367 + -2.3
6,367 + -1.2
6,368 - -0.3
6,374 + -1.1
6,374 + -0.7
6,375 - +0.2
6,380 + +1.1
6,388 + -2.3
6,389 - +0.5
6,393 + +0.4
6,393 + -3.4
6,393 + +0.8
6,393 + -1.3
6,393 + +0.0
6,393 + +0.3
6,393 + -1.1
6,394 - +0.0
6,394 - -1.3
6,394 - +0.1
6,394 - -0.8
6,394 - -1.8
6,394 - -0.7
6,394 - +1.5
6,394 - -0.3
6,394 - -0.1
6,394 - +0.5
6,396 + -0.7
6,396 + -1.1
6,396 + -0.3
6,396 + -0.6
6,396 + +0.5
6,396 + -0.2
6,397 - -0.3
6,397 - -1.4
6,397 - -0.4
6,397 - -0.3
6,397 - -0.2
6,401 + -0.6
6,401 + -0.1
6,401 + -1.8
6,402 - -0.5
6,402 - -0.1
6,402 - -1.1
6,409 + +0.8
6,513 + -0.7
6,514 - -0.4
6,661 + -0.1
6,661 + -1.5
6,661 + -3.1
6,661 + -0.2
6,662 - -0.5
6,662 - -0.8
6,662 - -0.4
6,662 - -0.1
6,662 - +0.2
6,662 - -0.8
6,662 - -0.7
6,736 + -0.6
6,752 - +0.1
6,825 - -2.7
6,850 + -0.6
6,850 + -1.4
6,850 + +0.5
6,850 + +0.9
6,850 + -0.1
6,851 - -3.0
6,896 + -2.8
6,896 + -0.1
6,897 - +0.5
6,897 - -0.4
6,897 - -0.1
7,068 + -0.7
7,068 + -1.9
7,068 + -0.1
7,068 + -0.7
7,068 + -0.5
7,068 + +0.2
7,068 + -1.7
7,068 + -0.8
7,068 + -0.1
7,069 - -0.8
7,069 - -0.2
7,069 - -0.0
7,069 - +0.8
7,069 - -1.5
7,069 - -0.7
7,069 - -0.5
7,069 - -0.3
7,069 - +1.1
7,080 + MPMX19_06255 0.10 -1.5
7,121 + MPMX19_06255 0.14 -1.5
7,490 + MPMX19_06255 0.44 -1.5
7,490 + MPMX19_06255 0.44 +1.0
7,491 - MPMX19_06255 0.44 +0.1
7,491 - MPMX19_06255 0.44 -1.8
7,491 - MPMX19_06255 0.44 -0.2
7,644 + MPMX19_06255 0.56 -1.5
7,644 + MPMX19_06255 0.56 -2.3
7,644 + MPMX19_06255 0.56 -0.5
7,644 + MPMX19_06255 0.56 -2.1
7,645 - MPMX19_06255 0.56 -1.8
7,645 - MPMX19_06255 0.56 -0.1
7,789 - MPMX19_06255 0.68 -1.3
7,815 + MPMX19_06255 0.70 -0.1
7,816 - MPMX19_06255 0.70 -0.1
7,980 + MPMX19_06255 0.83 -0.8
7,980 + MPMX19_06255 0.83 -0.7
7,981 - MPMX19_06255 0.84 -0.7
8,112 - +0.9
8,112 - -0.8
8,112 - +0.9
8,112 - +0.5
8,112 - +1.1
8,112 - +0.7
8,112 - +0.1
8,112 - +0.2
8,112 - -0.8
8,314 - +1.3
8,355 + +1.4
8,355 + +2.2
8,355 + -2.3
8,355 + -1.1
8,355 + -0.1
8,356 - +0.2
8,356 - -1.8
8,356 - -0.5
8,356 - +1.5
8,356 - -0.5
8,356 - +0.0
8,356 - -1.3
8,419 + -2.1
8,419 + +0.1
8,420 - +1.5
8,497 + -0.2
8,498 - -0.6
8,616 - -0.6
8,668 + -0.5
8,669 - +0.3
8,813 + +0.5
8,814 - +0.3
8,814 - +1.2
8,916 + -1.4
8,916 + -1.5
8,917 - +0.3
8,917 - -0.5
8,933 + +0.5
8,970 + -1.5
8,971 - +1.1
8,971 - -1.5
8,971 - -0.1
8,971 - -0.5
8,971 - -2.3
8,971 - -0.2

Or see this region's nucleotide sequence