Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06169

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06168 and MPMX19_06169 are separated by 36 nucleotidesMPMX19_06169 and MPMX19_06170 are separated by 507 nucleotides MPMX19_06168: MPMX19_06168 - hypothetical protein, at 355,578 to 358,229 _06168 MPMX19_06169: MPMX19_06169 - hypothetical protein, at 358,266 to 358,820 _06169 MPMX19_06170: MPMX19_06170 - hypothetical protein, at 359,328 to 360,821 _06170 Position (kb) 358 359Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 358.357 kb on + strand, within MPMX19_06169at 358.357 kb on + strand, within MPMX19_06169at 358.357 kb on + strand, within MPMX19_06169at 358.357 kb on + strand, within MPMX19_06169at 358.357 kb on + strand, within MPMX19_06169at 358.357 kb on + strand, within MPMX19_06169at 358.357 kb on + strand, within MPMX19_06169at 358.357 kb on + strand, within MPMX19_06169at 358.357 kb on + strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.358 kb on - strand, within MPMX19_06169at 358.588 kb on + strand, within MPMX19_06169at 358.588 kb on + strand, within MPMX19_06169at 358.622 kb on - strand, within MPMX19_06169at 358.622 kb on - strand, within MPMX19_06169at 358.840 kb on + strandat 358.840 kb on + strandat 358.840 kb on + strandat 358.840 kb on + strandat 358.840 kb on + strandat 358.840 kb on + strandat 358.840 kb on + strandat 358.840 kb on + strandat 358.840 kb on + strandat 358.840 kb on + strandat 358.841 kb on - strandat 358.841 kb on - strandat 358.841 kb on - strandat 358.841 kb on - strandat 358.841 kb on - strandat 358.841 kb on - strandat 358.841 kb on - strandat 358.841 kb on - strandat 358.841 kb on - strandat 358.841 kb on - strandat 358.866 kb on + strandat 358.866 kb on + strandat 358.866 kb on + strandat 358.866 kb on + strandat 358.866 kb on + strandat 358.866 kb on + strandat 358.866 kb on + strandat 358.866 kb on + strandat 358.866 kb on + strandat 358.866 kb on + strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.867 kb on - strandat 358.966 kb on + strandat 358.966 kb on + strandat 358.966 kb on + strandat 358.966 kb on + strandat 358.966 kb on + strandat 358.966 kb on + strandat 358.967 kb on - strandat 358.967 kb on - strandat 358.967 kb on - strandat 358.967 kb on - strandat 358.967 kb on - strandat 358.971 kb on + strandat 358.971 kb on + strandat 358.992 kb on + strandat 358.992 kb on + strandat 358.993 kb on - strandat 358.993 kb on - strandat 359.002 kb on + strandat 359.208 kb on + strandat 359.208 kb on + strandat 359.209 kb on - strandat 359.217 kb on + strandat 359.217 kb on + strandat 359.217 kb on + strandat 359.217 kb on + strandat 359.217 kb on + strandat 359.218 kb on - strandat 359.218 kb on - strandat 359.218 kb on - strandat 359.218 kb on - strandat 359.218 kb on - strandat 359.269 kb on + strandat 359.269 kb on + strandat 359.270 kb on - strandat 359.270 kb on - strandat 359.270 kb on - strandat 359.270 kb on - strandat 359.492 kb on + strand, within MPMX19_06170at 359.493 kb on - strand, within MPMX19_06170at 359.493 kb on - strand, within MPMX19_06170at 359.493 kb on - strand, within MPMX19_06170at 359.520 kb on + strand, within MPMX19_06170at 359.520 kb on + strand, within MPMX19_06170at 359.520 kb on + strand, within MPMX19_06170at 359.521 kb on - strand, within MPMX19_06170at 359.521 kb on - strand, within MPMX19_06170at 359.521 kb on - strand, within MPMX19_06170at 359.521 kb on - strand, within MPMX19_06170at 359.667 kb on + strand, within MPMX19_06170at 359.667 kb on + strand, within MPMX19_06170at 359.667 kb on + strand, within MPMX19_06170at 359.667 kb on + strand, within MPMX19_06170at 359.667 kb on + strand, within MPMX19_06170at 359.667 kb on + strand, within MPMX19_06170at 359.667 kb on + strand, within MPMX19_06170at 359.667 kb on + strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.668 kb on - strand, within MPMX19_06170at 359.707 kb on - strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.772 kb on + strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170at 359.773 kb on - strand, within MPMX19_06170

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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358,357 + MPMX19_06169 0.16 -1.9
358,357 + MPMX19_06169 0.16 +0.9
358,357 + MPMX19_06169 0.16 +0.0
358,357 + MPMX19_06169 0.16 -1.1
358,357 + MPMX19_06169 0.16 -0.6
358,357 + MPMX19_06169 0.16 -2.5
358,357 + MPMX19_06169 0.16 +0.4
358,357 + MPMX19_06169 0.16 +0.4
358,357 + MPMX19_06169 0.16 +2.8
358,358 - MPMX19_06169 0.17 +1.4
358,358 - MPMX19_06169 0.17 +0.4
358,358 - MPMX19_06169 0.17 -1.1
358,358 - MPMX19_06169 0.17 -0.1
358,358 - MPMX19_06169 0.17 +0.6
358,358 - MPMX19_06169 0.17 -0.6
358,358 - MPMX19_06169 0.17 -0.0
358,358 - MPMX19_06169 0.17 +0.9
358,358 - MPMX19_06169 0.17 -0.2
358,358 - MPMX19_06169 0.17 +1.0
358,358 - MPMX19_06169 0.17 -1.1
358,588 + MPMX19_06169 0.58 +1.2
358,588 + MPMX19_06169 0.58 +0.8
358,622 - MPMX19_06169 0.64 +0.9
358,622 - MPMX19_06169 0.64 -1.9
358,840 + +0.1
358,840 + -0.0
358,840 + +0.0
358,840 + -0.9
358,840 + -0.5
358,840 + -0.4
358,840 + +2.4
358,840 + +0.0
358,840 + +0.4
358,840 + +0.6
358,841 - -1.7
358,841 - +1.2
358,841 - -0.4
358,841 - +0.0
358,841 - -0.2
358,841 - -0.9
358,841 - +1.2
358,841 - +0.4
358,841 - -0.1
358,841 - -1.0
358,866 + -0.4
358,866 + +0.2
358,866 + -0.1
358,866 + -0.4
358,866 + -0.0
358,866 + +0.4
358,866 + +0.4
358,866 + +0.4
358,866 + +1.4
358,866 + -1.9
358,867 - +0.3
358,867 - +0.0
358,867 - +1.0
358,867 - -2.1
358,867 - -1.9
358,867 - -0.3
358,867 - -0.0
358,867 - +0.0
358,867 - -0.6
358,867 - -0.0
358,867 - +1.2
358,867 - +0.4
358,867 - +0.0
358,966 + +0.1
358,966 + -0.4
358,966 + -0.1
358,966 + +0.1
358,966 + +0.1
358,966 + -1.4
358,967 - -0.2
358,967 - +0.2
358,967 - +0.4
358,967 - -0.0
358,967 - -0.2
358,971 + -0.1
358,971 + +0.1
358,992 + -1.1
358,992 + -1.9
358,993 - +0.4
358,993 - +0.9
359,002 + +0.9
359,208 + -0.1
359,208 + +1.6
359,209 - -1.1
359,217 + -2.4
359,217 + +1.3
359,217 + -2.4
359,217 + -0.6
359,217 + -0.6
359,218 - -0.2
359,218 - +0.4
359,218 - -0.3
359,218 - -1.7
359,218 - -0.8
359,269 + -0.5
359,269 + -0.1
359,270 - -0.6
359,270 - -0.4
359,270 - +1.4
359,270 - -0.4
359,492 + MPMX19_06170 0.11 -1.1
359,493 - MPMX19_06170 0.11 +0.2
359,493 - MPMX19_06170 0.11 +0.9
359,493 - MPMX19_06170 0.11 -0.3
359,520 + MPMX19_06170 0.13 -1.2
359,520 + MPMX19_06170 0.13 -1.0
359,520 + MPMX19_06170 0.13 -0.9
359,521 - MPMX19_06170 0.13 +0.0
359,521 - MPMX19_06170 0.13 -0.6
359,521 - MPMX19_06170 0.13 +0.1
359,521 - MPMX19_06170 0.13 -0.3
359,667 + MPMX19_06170 0.23 -1.0
359,667 + MPMX19_06170 0.23 -0.2
359,667 + MPMX19_06170 0.23 -2.4
359,667 + MPMX19_06170 0.23 -0.4
359,667 + MPMX19_06170 0.23 +0.1
359,667 + MPMX19_06170 0.23 +0.4
359,667 + MPMX19_06170 0.23 -1.9
359,667 + MPMX19_06170 0.23 +2.0
359,668 - MPMX19_06170 0.23 -3.4
359,668 - MPMX19_06170 0.23 +0.0
359,668 - MPMX19_06170 0.23 -0.1
359,668 - MPMX19_06170 0.23 +0.7
359,668 - MPMX19_06170 0.23 -0.7
359,668 - MPMX19_06170 0.23 -0.4
359,668 - MPMX19_06170 0.23 -0.0
359,668 - MPMX19_06170 0.23 -2.9
359,668 - MPMX19_06170 0.23 -1.6
359,668 - MPMX19_06170 0.23 -0.9
359,707 - MPMX19_06170 0.25 +0.4
359,772 + MPMX19_06170 0.30 -1.0
359,772 + MPMX19_06170 0.30 -0.4
359,772 + MPMX19_06170 0.30 -0.2
359,772 + MPMX19_06170 0.30 -1.4
359,772 + MPMX19_06170 0.30 -0.1
359,772 + MPMX19_06170 0.30 +0.1
359,772 + MPMX19_06170 0.30 -2.4
359,772 + MPMX19_06170 0.30 +0.2
359,772 + MPMX19_06170 0.30 +0.3
359,772 + MPMX19_06170 0.30 +0.3
359,772 + MPMX19_06170 0.30 -0.3
359,772 + MPMX19_06170 0.30 +0.2
359,772 + MPMX19_06170 0.30 -1.6
359,772 + MPMX19_06170 0.30 +0.6
359,772 + MPMX19_06170 0.30 +1.0
359,772 + MPMX19_06170 0.30 -0.9
359,772 + MPMX19_06170 0.30 -0.4
359,772 + MPMX19_06170 0.30 -0.6
359,772 + MPMX19_06170 0.30 -0.4
359,772 + MPMX19_06170 0.30 +0.4
359,772 + MPMX19_06170 0.30 -0.3
359,772 + MPMX19_06170 0.30 +0.4
359,772 + MPMX19_06170 0.30 -0.6
359,772 + MPMX19_06170 0.30 +1.4
359,772 + MPMX19_06170 0.30 +0.4
359,773 - MPMX19_06170 0.30 +0.4
359,773 - MPMX19_06170 0.30 -0.6
359,773 - MPMX19_06170 0.30 -0.3
359,773 - MPMX19_06170 0.30 -0.6
359,773 - MPMX19_06170 0.30 +1.1
359,773 - MPMX19_06170 0.30 -0.6
359,773 - MPMX19_06170 0.30 -0.6
359,773 - MPMX19_06170 0.30 -2.3
359,773 - MPMX19_06170 0.30 +1.1
359,773 - MPMX19_06170 0.30 -1.4
359,773 - MPMX19_06170 0.30 +0.8
359,773 - MPMX19_06170 0.30 -0.1
359,773 - MPMX19_06170 0.30 +1.1

Or see this region's nucleotide sequence