Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05787

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05785 and MPMX19_05786 are separated by 154 nucleotidesMPMX19_05786 and MPMX19_05787 are separated by 15 nucleotidesMPMX19_05787 and MPMX19_05788 are separated by 236 nucleotides MPMX19_05785: MPMX19_05785 - hypothetical protein, at 508,338 to 509,354 _05785 MPMX19_05786: MPMX19_05786 - HTH-type transcriptional repressor RspR, at 509,509 to 510,267 _05786 MPMX19_05787: MPMX19_05787 - Methylglyoxal synthase, at 510,283 to 510,750 _05787 MPMX19_05788: MPMX19_05788 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 510,987 to 511,823 _05788 Position (kb) 510 511Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 509.316 kb on + strandat 509.316 kb on + strandat 509.317 kb on - strandat 509.317 kb on - strandat 509.352 kb on + strandat 509.352 kb on + strandat 509.352 kb on + strandat 509.352 kb on + strandat 509.352 kb on + strandat 509.352 kb on + strandat 509.352 kb on + strandat 509.353 kb on - strandat 509.353 kb on - strandat 509.353 kb on - strandat 509.353 kb on - strandat 509.353 kb on - strandat 509.353 kb on - strandat 509.452 kb on + strandat 509.452 kb on + strandat 509.453 kb on - strandat 509.454 kb on + strandat 509.454 kb on + strandat 509.454 kb on + strandat 509.454 kb on + strandat 509.454 kb on + strandat 509.454 kb on + strandat 509.454 kb on + strandat 509.454 kb on + strandat 509.454 kb on + strandat 509.455 kb on - strandat 509.455 kb on - strandat 509.455 kb on - strandat 509.455 kb on - strandat 509.457 kb on + strandat 509.457 kb on + strandat 509.457 kb on + strandat 509.457 kb on + strandat 509.458 kb on - strandat 509.458 kb on - strandat 509.458 kb on - strandat 509.458 kb on - strandat 509.458 kb on - strandat 509.460 kb on + strandat 509.461 kb on - strandat 509.461 kb on - strandat 509.477 kb on + strandat 509.508 kb on + strandat 509.508 kb on + strandat 509.508 kb on + strandat 509.508 kb on + strandat 509.508 kb on + strandat 509.509 kb on - strandat 509.509 kb on - strandat 509.509 kb on - strandat 509.509 kb on - strandat 509.509 kb on - strandat 509.529 kb on + strandat 509.635 kb on + strand, within MPMX19_05786at 509.635 kb on + strand, within MPMX19_05786at 509.635 kb on + strand, within MPMX19_05786at 509.635 kb on + strand, within MPMX19_05786at 509.635 kb on + strand, within MPMX19_05786at 509.636 kb on - strand, within MPMX19_05786at 509.636 kb on - strand, within MPMX19_05786at 509.636 kb on - strand, within MPMX19_05786at 509.636 kb on - strand, within MPMX19_05786at 509.636 kb on - strand, within MPMX19_05786at 509.636 kb on - strand, within MPMX19_05786at 509.717 kb on - strand, within MPMX19_05786at 509.717 kb on - strand, within MPMX19_05786at 509.717 kb on - strand, within MPMX19_05786at 509.717 kb on - strand, within MPMX19_05786at 509.717 kb on - strand, within MPMX19_05786at 509.717 kb on - strand, within MPMX19_05786at 509.717 kb on - strand, within MPMX19_05786at 509.881 kb on + strand, within MPMX19_05786at 510.244 kb on + strandat 510.245 kb on - strandat 510.245 kb on - strandat 510.253 kb on + strandat 510.254 kb on - strandat 510.254 kb on - strandat 510.254 kb on - strandat 510.254 kb on - strandat 510.302 kb on + strandat 510.303 kb on - strandat 510.303 kb on - strandat 510.332 kb on + strand, within MPMX19_05787at 510.333 kb on - strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.404 kb on + strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.405 kb on - strand, within MPMX19_05787at 510.782 kb on - strandat 510.782 kb on - strandat 510.785 kb on - strandat 510.787 kb on - strandat 510.787 kb on - strandat 510.898 kb on + strandat 510.898 kb on + strandat 510.898 kb on + strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.899 kb on - strandat 510.971 kb on + strandat 510.971 kb on + strandat 510.971 kb on + strandat 510.972 kb on - strandat 510.972 kb on - strandat 510.972 kb on - strandat 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.107 kb on + strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.108 kb on - strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.272 kb on + strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.273 kb on - strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.299 kb on + strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.300 kb on - strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.365 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.476 kb on + strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.477 kb on - strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.599 kb on + strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.600 kb on - strand, within MPMX19_05788at 511.605 kb on + strand, within MPMX19_05788at 511.606 kb on - strand, within MPMX19_05788at 511.606 kb on - strand, within MPMX19_05788at 511.606 kb on - strand, within MPMX19_05788at 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.743 kb on + strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strandat 511.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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509,316 + -0.5
509,316 + +0.3
509,317 - -0.7
509,317 - +0.7
509,352 + -0.0
509,352 + -0.7
509,352 + -0.3
509,352 + +0.3
509,352 + -0.7
509,352 + -0.3
509,352 + +0.7
509,353 - +0.5
509,353 - -0.2
509,353 - -0.3
509,353 - -0.5
509,353 - -0.7
509,353 - +0.2
509,452 + -1.1
509,452 + +1.3
509,453 - +0.3
509,454 + -0.1
509,454 + +0.1
509,454 + -2.0
509,454 + -0.7
509,454 + -0.1
509,454 + +0.7
509,454 + -1.0
509,454 + -2.0
509,454 + -1.0
509,455 - -1.0
509,455 - +0.9
509,455 - +0.8
509,455 - +1.6
509,457 + -0.3
509,457 + +0.5
509,457 + -2.0
509,457 + -1.7
509,458 - -0.2
509,458 - +0.3
509,458 - -0.7
509,458 - -1.7
509,458 - -0.4
509,460 + +0.3
509,461 - -0.4
509,461 - -0.7
509,477 + -0.6
509,508 + +0.3
509,508 + -0.1
509,508 + +0.9
509,508 + -1.5
509,508 + -0.1
509,509 - +0.1
509,509 - -0.6
509,509 - +0.5
509,509 - -0.0
509,509 - +0.0
509,529 + +1.3
509,635 + MPMX19_05786 0.17 -0.1
509,635 + MPMX19_05786 0.17 +0.5
509,635 + MPMX19_05786 0.17 -0.7
509,635 + MPMX19_05786 0.17 -1.0
509,635 + MPMX19_05786 0.17 -1.3
509,636 - MPMX19_05786 0.17 -0.3
509,636 - MPMX19_05786 0.17 -2.0
509,636 - MPMX19_05786 0.17 +0.9
509,636 - MPMX19_05786 0.17 -0.7
509,636 - MPMX19_05786 0.17 -0.5
509,636 - MPMX19_05786 0.17 -0.7
509,717 - MPMX19_05786 0.27 +1.6
509,717 - MPMX19_05786 0.27 -0.3
509,717 - MPMX19_05786 0.27 -0.1
509,717 - MPMX19_05786 0.27 -2.8
509,717 - MPMX19_05786 0.27 -0.5
509,717 - MPMX19_05786 0.27 +1.7
509,717 - MPMX19_05786 0.27 -2.5
509,881 + MPMX19_05786 0.49 -0.3
510,244 + +0.7
510,245 - +0.5
510,245 - -0.4
510,253 + -0.0
510,254 - -0.5
510,254 - -2.0
510,254 - -1.5
510,254 - -0.3
510,302 + +0.3
510,303 - -1.7
510,303 - +1.1
510,332 + MPMX19_05787 0.10 -0.2
510,333 - MPMX19_05787 0.11 +0.3
510,404 + MPMX19_05787 0.26 +0.3
510,404 + MPMX19_05787 0.26 +1.9
510,404 + MPMX19_05787 0.26 +0.3
510,404 + MPMX19_05787 0.26 +0.1
510,404 + MPMX19_05787 0.26 +0.1
510,405 - MPMX19_05787 0.26 +0.7
510,405 - MPMX19_05787 0.26 +1.3
510,405 - MPMX19_05787 0.26 -0.1
510,405 - MPMX19_05787 0.26 -0.3
510,405 - MPMX19_05787 0.26 -0.3
510,405 - MPMX19_05787 0.26 -1.0
510,405 - MPMX19_05787 0.26 +1.5
510,405 - MPMX19_05787 0.26 -2.0
510,405 - MPMX19_05787 0.26 -0.7
510,405 - MPMX19_05787 0.26 +0.2
510,405 - MPMX19_05787 0.26 +0.3
510,782 - -0.3
510,782 - -1.3
510,785 - -1.1
510,787 - -0.5
510,787 - -0.2
510,898 + -0.6
510,898 + +0.3
510,898 + -0.7
510,899 - -2.5
510,899 - -0.0
510,899 - +1.5
510,899 - -1.0
510,899 - -0.3
510,899 - +0.3
510,971 + -1.3
510,971 + +0.1
510,971 + +0.3
510,972 - +0.5
510,972 - -0.1
510,972 - -0.1
511,107 + MPMX19_05788 0.14 -0.1
511,107 + MPMX19_05788 0.14 -0.5
511,107 + MPMX19_05788 0.14 -1.1
511,107 + MPMX19_05788 0.14 +0.1
511,107 + MPMX19_05788 0.14 +0.0
511,107 + MPMX19_05788 0.14 -0.0
511,107 + MPMX19_05788 0.14 -1.3
511,107 + MPMX19_05788 0.14 -0.2
511,107 + MPMX19_05788 0.14 -0.7
511,107 + MPMX19_05788 0.14 -0.3
511,107 + MPMX19_05788 0.14 -1.0
511,107 + MPMX19_05788 0.14 +0.3
511,108 - MPMX19_05788 0.14 -0.1
511,108 - MPMX19_05788 0.14 -1.8
511,108 - MPMX19_05788 0.14 +0.3
511,108 - MPMX19_05788 0.14 -1.7
511,108 - MPMX19_05788 0.14 -0.1
511,108 - MPMX19_05788 0.14 +2.6
511,108 - MPMX19_05788 0.14 -0.4
511,108 - MPMX19_05788 0.14 -0.1
511,108 - MPMX19_05788 0.14 -0.5
511,108 - MPMX19_05788 0.14 -2.8
511,108 - MPMX19_05788 0.14 -0.2
511,272 + MPMX19_05788 0.34 +0.0
511,272 + MPMX19_05788 0.34 +0.2
511,272 + MPMX19_05788 0.34 -0.3
511,272 + MPMX19_05788 0.34 -1.0
511,272 + MPMX19_05788 0.34 -0.3
511,272 + MPMX19_05788 0.34 +0.3
511,272 + MPMX19_05788 0.34 -1.6
511,273 - MPMX19_05788 0.34 +1.1
511,273 - MPMX19_05788 0.34 -0.2
511,273 - MPMX19_05788 0.34 -0.4
511,273 - MPMX19_05788 0.34 -0.3
511,273 - MPMX19_05788 0.34 +0.3
511,299 + MPMX19_05788 0.37 -1.1
511,299 + MPMX19_05788 0.37 -0.9
511,299 + MPMX19_05788 0.37 -0.7
511,299 + MPMX19_05788 0.37 -0.1
511,299 + MPMX19_05788 0.37 +0.9
511,299 + MPMX19_05788 0.37 +0.6
511,299 + MPMX19_05788 0.37 +0.1
511,299 + MPMX19_05788 0.37 -0.0
511,300 - MPMX19_05788 0.37 -1.1
511,300 - MPMX19_05788 0.37 +0.9
511,300 - MPMX19_05788 0.37 -0.4
511,300 - MPMX19_05788 0.37 -1.0
511,300 - MPMX19_05788 0.37 -0.8
511,300 - MPMX19_05788 0.37 +0.3
511,300 - MPMX19_05788 0.37 -1.7
511,365 + MPMX19_05788 0.45 -1.4
511,365 + MPMX19_05788 0.45 -0.6
511,365 + MPMX19_05788 0.45 +0.6
511,365 + MPMX19_05788 0.45 -0.2
511,365 + MPMX19_05788 0.45 -0.8
511,365 + MPMX19_05788 0.45 +1.4
511,476 + MPMX19_05788 0.58 +0.1
511,476 + MPMX19_05788 0.58 -0.3
511,476 + MPMX19_05788 0.58 -1.3
511,476 + MPMX19_05788 0.58 -0.3
511,476 + MPMX19_05788 0.58 +0.4
511,476 + MPMX19_05788 0.58 -0.3
511,476 + MPMX19_05788 0.58 -1.7
511,477 - MPMX19_05788 0.59 +1.1
511,477 - MPMX19_05788 0.59 +0.7
511,477 - MPMX19_05788 0.59 -0.7
511,477 - MPMX19_05788 0.59 -1.0
511,477 - MPMX19_05788 0.59 -0.7
511,477 - MPMX19_05788 0.59 +1.1
511,477 - MPMX19_05788 0.59 +0.9
511,599 + MPMX19_05788 0.73 -0.2
511,599 + MPMX19_05788 0.73 -0.0
511,599 + MPMX19_05788 0.73 -0.7
511,599 + MPMX19_05788 0.73 +0.3
511,599 + MPMX19_05788 0.73 +0.4
511,599 + MPMX19_05788 0.73 -1.4
511,599 + MPMX19_05788 0.73 -1.7
511,599 + MPMX19_05788 0.73 -0.2
511,599 + MPMX19_05788 0.73 +1.1
511,599 + MPMX19_05788 0.73 +1.0
511,599 + MPMX19_05788 0.73 -0.1
511,599 + MPMX19_05788 0.73 -2.0
511,599 + MPMX19_05788 0.73 -0.7
511,600 - MPMX19_05788 0.73 +0.5
511,600 - MPMX19_05788 0.73 -2.7
511,600 - MPMX19_05788 0.73 +0.5
511,600 - MPMX19_05788 0.73 +0.7
511,600 - MPMX19_05788 0.73 -0.1
511,600 - MPMX19_05788 0.73 -0.5
511,600 - MPMX19_05788 0.73 -0.3
511,600 - MPMX19_05788 0.73 +0.9
511,600 - MPMX19_05788 0.73 +0.7
511,605 + MPMX19_05788 0.74 +1.3
511,606 - MPMX19_05788 0.74 +0.8
511,606 - MPMX19_05788 0.74 +0.2
511,606 - MPMX19_05788 0.74 -0.5
511,743 + -0.2
511,743 + -0.3
511,743 + +0.1
511,743 + +0.5
511,743 + -0.3
511,743 + -1.3
511,743 + -1.0
511,743 + +1.7
511,743 + +0.6
511,743 + +0.7
511,744 - +0.1
511,744 - -2.7
511,744 - +0.7
511,744 - -0.7
511,744 - -1.7
511,744 - -2.0
511,744 - +0.1
511,744 - +0.8
511,744 - +1.1
511,744 - +0.5
511,744 - +0.7
511,744 - -0.4
511,744 - -1.0
511,744 - -0.3
511,744 - -0.9
511,744 - -0.5
511,744 - -0.2
511,744 - -1.0
511,744 - -1.0

Or see this region's nucleotide sequence