Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05076

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05075 and MPMX19_05076 are separated by 190 nucleotidesMPMX19_05076 and MPMX19_05077 overlap by 89 nucleotidesMPMX19_05077 and MPMX19_05078 are separated by 2 nucleotides MPMX19_05075: MPMX19_05075 - hypothetical protein, at 559,144 to 561,207 _05075 MPMX19_05076: MPMX19_05076 - Carboxymethylenebutenolidase, at 561,398 to 562,075 _05076 MPMX19_05077: MPMX19_05077 - Magnetosome protein MamZ, at 561,987 to 562,745 _05077 MPMX19_05078: MPMX19_05078 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 562,748 to 563,695 _05078 Position (kb) 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 561.181 kb on + strandat 561.233 kb on + strandat 561.234 kb on - strandat 561.234 kb on - strandat 561.234 kb on - strandat 561.274 kb on + strandat 561.274 kb on + strandat 561.275 kb on - strandat 561.275 kb on - strandat 561.275 kb on - strandat 561.275 kb on - strandat 561.332 kb on + strandat 561.332 kb on + strandat 561.332 kb on + strandat 561.332 kb on + strandat 561.333 kb on - strandat 561.333 kb on - strandat 561.333 kb on - strandat 561.465 kb on - strandat 561.632 kb on + strand, within MPMX19_05076at 561.632 kb on + strand, within MPMX19_05076at 561.632 kb on + strand, within MPMX19_05076at 561.632 kb on + strand, within MPMX19_05076at 561.632 kb on + strand, within MPMX19_05076at 561.632 kb on + strand, within MPMX19_05076at 561.632 kb on + strand, within MPMX19_05076at 561.633 kb on - strand, within MPMX19_05076at 561.758 kb on + strand, within MPMX19_05076at 561.824 kb on + strand, within MPMX19_05076at 561.827 kb on + strand, within MPMX19_05076at 561.828 kb on - strand, within MPMX19_05076at 561.969 kb on - strand, within MPMX19_05076at 561.969 kb on - strand, within MPMX19_05076at 562.151 kb on + strand, within MPMX19_05077at 562.152 kb on - strand, within MPMX19_05077at 562.165 kb on + strand, within MPMX19_05077at 562.165 kb on + strand, within MPMX19_05077at 562.166 kb on - strand, within MPMX19_05077at 562.166 kb on - strand, within MPMX19_05077at 562.166 kb on - strand, within MPMX19_05077at 562.166 kb on - strand, within MPMX19_05077at 562.166 kb on - strand, within MPMX19_05077at 562.166 kb on - strand, within MPMX19_05077at 562.166 kb on - strand, within MPMX19_05077at 562.166 kb on - strand, within MPMX19_05077at 562.354 kb on + strand, within MPMX19_05077at 562.354 kb on + strand, within MPMX19_05077at 562.354 kb on + strand, within MPMX19_05077at 562.354 kb on + strand, within MPMX19_05077at 562.354 kb on + strand, within MPMX19_05077at 562.354 kb on + strand, within MPMX19_05077at 562.354 kb on + strand, within MPMX19_05077at 562.354 kb on + strand, within MPMX19_05077at 562.354 kb on + strand, within MPMX19_05077at 562.355 kb on - strand, within MPMX19_05077at 562.355 kb on - strand, within MPMX19_05077at 562.355 kb on - strand, within MPMX19_05077at 562.355 kb on - strand, within MPMX19_05077at 562.355 kb on - strand, within MPMX19_05077at 562.355 kb on - strand, within MPMX19_05077at 562.355 kb on - strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.417 kb on + strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.418 kb on - strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.441 kb on + strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.442 kb on - strand, within MPMX19_05077at 562.609 kb on + strand, within MPMX19_05077at 562.609 kb on + strand, within MPMX19_05077at 562.610 kb on - strand, within MPMX19_05077at 562.610 kb on - strand, within MPMX19_05077at 562.610 kb on - strand, within MPMX19_05077at 562.610 kb on - strand, within MPMX19_05077at 562.610 kb on - strand, within MPMX19_05077at 562.682 kb on + strandat 562.682 kb on + strandat 562.682 kb on + strandat 562.682 kb on + strandat 562.683 kb on - strandat 562.683 kb on - strandat 562.683 kb on - strandat 562.752 kb on + strandat 562.752 kb on + strandat 562.752 kb on + strandat 562.752 kb on + strandat 562.753 kb on - strandat 562.753 kb on - strandat 562.753 kb on - strandat 562.779 kb on + strandat 562.779 kb on + strandat 562.779 kb on + strandat 562.780 kb on - strandat 562.780 kb on - strandat 562.780 kb on - strandat 562.804 kb on - strandat 562.905 kb on + strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.915 kb on - strand, within MPMX19_05078at 562.915 kb on - strand, within MPMX19_05078at 562.915 kb on - strand, within MPMX19_05078at 562.915 kb on - strand, within MPMX19_05078at 563.004 kb on + strand, within MPMX19_05078at 563.004 kb on + strand, within MPMX19_05078at 563.005 kb on - strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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561,181 + -0.0
561,233 + +1.7
561,234 - +1.4
561,234 - -1.4
561,234 - -1.6
561,274 + -1.6
561,274 + -0.4
561,275 - +0.2
561,275 - -0.2
561,275 - -0.2
561,275 - +1.2
561,332 + +1.0
561,332 + -0.3
561,332 + -0.0
561,332 + +0.8
561,333 - +0.2
561,333 - -0.8
561,333 - -0.4
561,465 - -2.9
561,632 + MPMX19_05076 0.35 -0.2
561,632 + MPMX19_05076 0.35 +0.2
561,632 + MPMX19_05076 0.35 +0.3
561,632 + MPMX19_05076 0.35 -0.1
561,632 + MPMX19_05076 0.35 +0.7
561,632 + MPMX19_05076 0.35 +0.0
561,632 + MPMX19_05076 0.35 -0.2
561,633 - MPMX19_05076 0.35 -0.2
561,758 + MPMX19_05076 0.53 +1.4
561,824 + MPMX19_05076 0.63 +2.7
561,827 + MPMX19_05076 0.63 +0.7
561,828 - MPMX19_05076 0.63 -0.1
561,969 - MPMX19_05076 0.84 +0.9
561,969 - MPMX19_05076 0.84 -1.1
562,151 + MPMX19_05077 0.22 -0.4
562,152 - MPMX19_05077 0.22 -0.2
562,165 + MPMX19_05077 0.23 +1.4
562,165 + MPMX19_05077 0.23 -0.5
562,166 - MPMX19_05077 0.24 +0.0
562,166 - MPMX19_05077 0.24 -0.8
562,166 - MPMX19_05077 0.24 +0.1
562,166 - MPMX19_05077 0.24 -0.8
562,166 - MPMX19_05077 0.24 -0.8
562,166 - MPMX19_05077 0.24 -0.4
562,166 - MPMX19_05077 0.24 -0.1
562,166 - MPMX19_05077 0.24 +0.4
562,354 + MPMX19_05077 0.48 -0.9
562,354 + MPMX19_05077 0.48 -0.6
562,354 + MPMX19_05077 0.48 +0.5
562,354 + MPMX19_05077 0.48 -0.1
562,354 + MPMX19_05077 0.48 +1.6
562,354 + MPMX19_05077 0.48 -0.2
562,354 + MPMX19_05077 0.48 +0.1
562,354 + MPMX19_05077 0.48 -0.0
562,354 + MPMX19_05077 0.48 -0.3
562,355 - MPMX19_05077 0.48 -0.7
562,355 - MPMX19_05077 0.48 -0.6
562,355 - MPMX19_05077 0.48 -1.1
562,355 - MPMX19_05077 0.48 +0.2
562,355 - MPMX19_05077 0.48 +1.2
562,355 - MPMX19_05077 0.48 +0.3
562,355 - MPMX19_05077 0.48 -2.0
562,417 + MPMX19_05077 0.57 +0.1
562,417 + MPMX19_05077 0.57 +0.2
562,417 + MPMX19_05077 0.57 +0.4
562,417 + MPMX19_05077 0.57 +1.2
562,417 + MPMX19_05077 0.57 +0.4
562,417 + MPMX19_05077 0.57 -1.1
562,417 + MPMX19_05077 0.57 +0.8
562,417 + MPMX19_05077 0.57 +0.4
562,417 + MPMX19_05077 0.57 +0.2
562,417 + MPMX19_05077 0.57 +0.2
562,417 + MPMX19_05077 0.57 -1.2
562,417 + MPMX19_05077 0.57 -0.4
562,417 + MPMX19_05077 0.57 -1.2
562,417 + MPMX19_05077 0.57 -1.6
562,418 - MPMX19_05077 0.57 +0.9
562,418 - MPMX19_05077 0.57 -1.6
562,418 - MPMX19_05077 0.57 -0.6
562,418 - MPMX19_05077 0.57 +2.2
562,418 - MPMX19_05077 0.57 -0.9
562,418 - MPMX19_05077 0.57 -0.6
562,418 - MPMX19_05077 0.57 -0.3
562,418 - MPMX19_05077 0.57 +0.2
562,418 - MPMX19_05077 0.57 -1.9
562,418 - MPMX19_05077 0.57 -0.2
562,418 - MPMX19_05077 0.57 +0.4
562,418 - MPMX19_05077 0.57 +0.5
562,418 - MPMX19_05077 0.57 -0.0
562,418 - MPMX19_05077 0.57 +0.1
562,418 - MPMX19_05077 0.57 +1.3
562,418 - MPMX19_05077 0.57 -1.6
562,418 - MPMX19_05077 0.57 -0.1
562,441 + MPMX19_05077 0.60 -1.3
562,441 + MPMX19_05077 0.60 -0.4
562,441 + MPMX19_05077 0.60 -0.1
562,441 + MPMX19_05077 0.60 -0.5
562,441 + MPMX19_05077 0.60 +0.1
562,441 + MPMX19_05077 0.60 -1.9
562,441 + MPMX19_05077 0.60 +0.3
562,441 + MPMX19_05077 0.60 -1.6
562,441 + MPMX19_05077 0.60 -0.4
562,441 + MPMX19_05077 0.60 +2.2
562,441 + MPMX19_05077 0.60 -1.2
562,441 + MPMX19_05077 0.60 -1.4
562,441 + MPMX19_05077 0.60 -0.9
562,441 + MPMX19_05077 0.60 +0.8
562,441 + MPMX19_05077 0.60 +1.2
562,441 + MPMX19_05077 0.60 +0.9
562,441 + MPMX19_05077 0.60 -0.6
562,441 + MPMX19_05077 0.60 -0.0
562,441 + MPMX19_05077 0.60 +0.4
562,441 + MPMX19_05077 0.60 -0.4
562,441 + MPMX19_05077 0.60 +0.7
562,442 - MPMX19_05077 0.60 -0.4
562,442 - MPMX19_05077 0.60 -0.0
562,442 - MPMX19_05077 0.60 +1.7
562,442 - MPMX19_05077 0.60 -0.3
562,442 - MPMX19_05077 0.60 -1.9
562,442 - MPMX19_05077 0.60 -0.4
562,442 - MPMX19_05077 0.60 -1.2
562,442 - MPMX19_05077 0.60 -0.8
562,442 - MPMX19_05077 0.60 -0.4
562,442 - MPMX19_05077 0.60 -1.8
562,442 - MPMX19_05077 0.60 +0.4
562,442 - MPMX19_05077 0.60 +2.0
562,442 - MPMX19_05077 0.60 +0.4
562,442 - MPMX19_05077 0.60 +0.4
562,442 - MPMX19_05077 0.60 +1.2
562,442 - MPMX19_05077 0.60 -0.0
562,609 + MPMX19_05077 0.82 +0.5
562,609 + MPMX19_05077 0.82 -1.6
562,610 - MPMX19_05077 0.82 -1.2
562,610 - MPMX19_05077 0.82 -0.4
562,610 - MPMX19_05077 0.82 -0.2
562,610 - MPMX19_05077 0.82 -1.5
562,610 - MPMX19_05077 0.82 -1.7
562,682 + +0.1
562,682 + -0.3
562,682 + +0.8
562,682 + +0.7
562,683 - -1.2
562,683 - -0.3
562,683 - -0.2
562,752 + +0.4
562,752 + +0.4
562,752 + -0.3
562,752 + -2.8
562,753 - +0.4
562,753 - +0.2
562,753 - -0.3
562,779 + -1.2
562,779 + +0.4
562,779 + -1.4
562,780 - -0.4
562,780 - -1.2
562,780 - -1.0
562,804 - -0.4
562,905 + MPMX19_05078 0.17 -2.8
562,906 - MPMX19_05078 0.17 -0.7
562,906 - MPMX19_05078 0.17 +1.6
562,906 - MPMX19_05078 0.17 -0.8
562,906 - MPMX19_05078 0.17 -0.6
562,906 - MPMX19_05078 0.17 +0.4
562,906 - MPMX19_05078 0.17 -2.2
562,906 - MPMX19_05078 0.17 +0.7
562,906 - MPMX19_05078 0.17 +0.1
562,915 - MPMX19_05078 0.18 -0.3
562,915 - MPMX19_05078 0.18 +0.2
562,915 - MPMX19_05078 0.18 -0.9
562,915 - MPMX19_05078 0.18 -0.6
563,004 + MPMX19_05078 0.27 -0.6
563,004 + MPMX19_05078 0.27 +0.4
563,005 - MPMX19_05078 0.27 -1.4
563,064 + MPMX19_05078 0.33 -0.6
563,064 + MPMX19_05078 0.33 -2.0
563,064 + MPMX19_05078 0.33 +0.9
563,064 + MPMX19_05078 0.33 +0.4
563,064 + MPMX19_05078 0.33 -0.3
563,064 + MPMX19_05078 0.33 +0.2
563,064 + MPMX19_05078 0.33 +0.3
563,064 + MPMX19_05078 0.33 +0.4
563,064 + MPMX19_05078 0.33 -2.6
563,064 + MPMX19_05078 0.33 -0.6
563,064 + MPMX19_05078 0.33 -0.4
563,064 + MPMX19_05078 0.33 -0.2
563,064 + MPMX19_05078 0.33 +0.1
563,064 + MPMX19_05078 0.33 +1.3
563,064 + MPMX19_05078 0.33 -0.2
563,064 + MPMX19_05078 0.33 +0.7
563,064 + MPMX19_05078 0.33 +0.2
563,064 + MPMX19_05078 0.33 +0.8
563,064 + MPMX19_05078 0.33 -1.7
563,064 + MPMX19_05078 0.33 -1.0
563,064 + MPMX19_05078 0.33 +1.2
563,064 + MPMX19_05078 0.33 -0.9
563,064 + MPMX19_05078 0.33 -0.1
563,065 - MPMX19_05078 0.33 -0.1
563,065 - MPMX19_05078 0.33 -3.2
563,065 - MPMX19_05078 0.33 +0.7
563,065 - MPMX19_05078 0.33 +0.2
563,065 - MPMX19_05078 0.33 -1.3
563,065 - MPMX19_05078 0.33 -0.2
563,065 - MPMX19_05078 0.33 +0.4
563,065 - MPMX19_05078 0.33 +0.7
563,065 - MPMX19_05078 0.33 -0.8
563,065 - MPMX19_05078 0.33 +0.8
563,065 - MPMX19_05078 0.33 +0.4
563,065 - MPMX19_05078 0.33 -1.3
563,065 - MPMX19_05078 0.33 -0.7
563,065 - MPMX19_05078 0.33 -0.3
563,065 - MPMX19_05078 0.33 -0.2
563,065 - MPMX19_05078 0.33 -0.8
563,065 - MPMX19_05078 0.33 +0.6
563,065 - MPMX19_05078 0.33 -0.6
563,065 - MPMX19_05078 0.33 -1.6
563,065 - MPMX19_05078 0.33 -0.2
563,065 - MPMX19_05078 0.33 -0.6
563,065 - MPMX19_05078 0.33 +0.4
563,065 - MPMX19_05078 0.33 -0.3
563,065 - MPMX19_05078 0.33 -0.7
563,065 - MPMX19_05078 0.33 -0.3
563,065 - MPMX19_05078 0.33 -0.4
563,065 - MPMX19_05078 0.33 +0.1
563,065 - MPMX19_05078 0.33 -1.5
563,065 - MPMX19_05078 0.33 -0.6
563,065 - MPMX19_05078 0.33 -0.6
563,065 - MPMX19_05078 0.33 -1.0
563,065 - MPMX19_05078 0.33 -0.3
563,065 - MPMX19_05078 0.33 -1.8
563,065 - MPMX19_05078 0.33 -0.3
563,065 - MPMX19_05078 0.33 +0.8
563,065 - MPMX19_05078 0.33 -1.4
563,065 - MPMX19_05078 0.33 -0.2

Or see this region's nucleotide sequence