Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04538 and MPMX19_04539 are separated by 92 nucleotides MPMX19_04539 and MPMX19_04540 overlap by 8 nucleotides MPMX19_04540 and MPMX19_04541 overlap by 17 nucleotides MPMX19_04541 and MPMX19_04542 overlap by 4 nucleotides
MPMX19_04538: MPMX19_04538 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 911,341 to 912,474
_04538
MPMX19_04539: MPMX19_04539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 912,567 to 913,466
_04539
MPMX19_04540: MPMX19_04540 - hypothetical protein, at 913,459 to 914,358
_04540
MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175
_04541
MPMX19_04542: MPMX19_04542 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 915,172 to 915,897
_04542
Position (kb) 913
914
915 Strain fitness (log2 ratio) -2
-1
0
1 at 912.472 kb on + strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.473 kb on - strand at 912.473 kb on - strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.577 kb on + strand at 912.578 kb on - strand at 912.578 kb on - strand at 912.578 kb on - strand at 912.642 kb on + strand at 912.642 kb on + strand at 912.642 kb on + strand at 913.362 kb on + strand, within MPMX19_04539 at 913.362 kb on + strand, within MPMX19_04539 at 913.363 kb on - strand, within MPMX19_04539 at 913.423 kb on - strand at 913.555 kb on - strand, within MPMX19_04540 at 913.714 kb on + strand, within MPMX19_04540 at 913.714 kb on + strand, within MPMX19_04540 at 913.715 kb on - strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.194 kb on + strand, within MPMX19_04540 at 914.194 kb on + strand, within MPMX19_04540 at 914.195 kb on - strand, within MPMX19_04540 at 915.077 kb on + strand, within MPMX19_04541 at 915.077 kb on + strand, within MPMX19_04541 at 915.078 kb on - strand, within MPMX19_04541 at 915.205 kb on + strand at 915.205 kb on + strand at 915.205 kb on + strand at 915.206 kb on - strand at 915.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 912,472 + -0.3 912,472 + -0.2 912,472 + +0.3 912,472 + +0.3 912,473 - -0.0 912,473 - -0.9 912,559 + -0.8 912,559 + -0.3 912,559 + +0.3 912,559 + -0.6 912,559 + +0.0 912,559 + -1.0 912,559 + -1.6 912,559 + -1.3 912,559 + -0.1 912,559 + -1.3 912,559 + -0.6 912,559 + +0.4 912,559 + -1.9 912,559 + -0.1 912,559 + +0.1 912,559 + -1.1 912,559 + -1.6 912,559 + +1.2 912,559 + -0.6 912,559 + -0.6 912,559 + -0.6 912,560 - +0.6 912,560 - +0.9 912,560 - -1.7 912,560 - -0.6 912,560 - -1.3 912,560 - +0.2 912,560 - -0.9 912,560 - +0.4 912,560 - +0.3 912,560 - -0.6 912,560 - -2.1 912,560 - -0.6 912,560 - -1.1 912,560 - -1.3 912,560 - +0.0 912,560 - +1.0 912,560 - +0.4 912,560 - -0.8 912,560 - -0.9 912,560 - -0.6 912,560 - -0.9 912,560 - +0.4 912,560 - +0.9 912,560 - -0.8 912,560 - -0.6 912,560 - +0.3 912,560 - +0.0 912,577 + -0.8 912,578 - +0.4 912,578 - +0.9 912,578 - -0.1 912,642 + +0.7 912,642 + +1.2 912,642 + -1.1 913,362 + MPMX19_04539 0.88 -0.6 913,362 + MPMX19_04539 0.88 -1.7 913,363 - MPMX19_04539 0.88 +1.0 913,423 - -0.2 913,555 - MPMX19_04540 0.11 +0.2 913,714 + MPMX19_04540 0.28 -0.7 913,714 + MPMX19_04540 0.28 +0.3 913,715 - MPMX19_04540 0.28 -0.8 914,056 + MPMX19_04540 0.66 +0.6 914,056 + MPMX19_04540 0.66 +0.7 914,056 + MPMX19_04540 0.66 +0.3 914,056 + MPMX19_04540 0.66 -0.2 914,056 + MPMX19_04540 0.66 -1.6 914,056 + MPMX19_04540 0.66 -0.3 914,056 + MPMX19_04540 0.66 +0.4 914,056 + MPMX19_04540 0.66 -0.9 914,057 - MPMX19_04540 0.66 -1.1 914,057 - MPMX19_04540 0.66 +0.3 914,057 - MPMX19_04540 0.66 +0.6 914,057 - MPMX19_04540 0.66 +0.6 914,057 - MPMX19_04540 0.66 +0.4 914,057 - MPMX19_04540 0.66 +0.4 914,057 - MPMX19_04540 0.66 +0.7 914,057 - MPMX19_04540 0.66 +0.7 914,065 + MPMX19_04540 0.67 +0.4 914,065 + MPMX19_04540 0.67 -0.7 914,065 + MPMX19_04540 0.67 -0.1 914,065 + MPMX19_04540 0.67 +0.4 914,065 + MPMX19_04540 0.67 +1.4 914,066 - MPMX19_04540 0.67 -0.1 914,066 - MPMX19_04540 0.67 +0.8 914,066 - MPMX19_04540 0.67 -0.1 914,194 + MPMX19_04540 0.82 +0.9 914,194 + MPMX19_04540 0.82 -0.0 914,195 - MPMX19_04540 0.82 +1.7 915,077 + MPMX19_04541 0.88 -0.1 915,077 + MPMX19_04541 0.88 -1.5 915,078 - MPMX19_04541 0.88 -0.6 915,205 + -2.1 915,205 + +1.7 915,205 + +0.0 915,206 - -0.7 915,206 - +0.6
Or see this region's nucleotide sequence