Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04261

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04260 and MPMX19_04261 are separated by 4 nucleotidesMPMX19_04261 and MPMX19_04262 are separated by 48 nucleotidesMPMX19_04262 and MPMX19_04263 are separated by 111 nucleotides MPMX19_04260: MPMX19_04260 - Acetyl-coenzyme A synthetase, at 620,118 to 621,734 _04260 MPMX19_04261: MPMX19_04261 - putative membrane transporter protein YfcA, at 621,739 to 622,476 _04261 MPMX19_04262: MPMX19_04262 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 622,525 to 623,229 _04262 MPMX19_04263: MPMX19_04263 - hypothetical protein, at 623,341 to 624,348 _04263 Position (kb) 621 622 623Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 621.123 kb on + strand, within MPMX19_04260at 621.123 kb on + strand, within MPMX19_04260at 621.123 kb on + strand, within MPMX19_04260at 621.123 kb on + strand, within MPMX19_04260at 621.123 kb on + strand, within MPMX19_04260at 621.123 kb on + strand, within MPMX19_04260at 621.123 kb on + strand, within MPMX19_04260at 621.123 kb on + strand, within MPMX19_04260at 621.124 kb on - strand, within MPMX19_04260at 621.124 kb on - strand, within MPMX19_04260at 621.124 kb on - strand, within MPMX19_04260at 621.124 kb on - strand, within MPMX19_04260at 621.124 kb on - strand, within MPMX19_04260at 621.313 kb on - strand, within MPMX19_04260at 621.399 kb on + strand, within MPMX19_04260at 621.399 kb on + strand, within MPMX19_04260at 621.399 kb on + strand, within MPMX19_04260at 621.399 kb on + strand, within MPMX19_04260at 621.399 kb on + strand, within MPMX19_04260at 621.399 kb on + strand, within MPMX19_04260at 621.400 kb on - strand, within MPMX19_04260at 621.400 kb on - strand, within MPMX19_04260at 621.400 kb on - strand, within MPMX19_04260at 621.400 kb on - strand, within MPMX19_04260at 621.735 kb on + strandat 621.735 kb on + strandat 621.735 kb on + strandat 621.736 kb on - strandat 621.736 kb on - strandat 621.756 kb on - strandat 621.835 kb on + strand, within MPMX19_04261at 621.835 kb on + strand, within MPMX19_04261at 621.835 kb on + strand, within MPMX19_04261at 621.835 kb on + strand, within MPMX19_04261at 621.835 kb on + strand, within MPMX19_04261at 621.835 kb on + strand, within MPMX19_04261at 621.835 kb on + strand, within MPMX19_04261at 621.835 kb on + strand, within MPMX19_04261at 621.835 kb on + strand, within MPMX19_04261at 621.836 kb on - strand, within MPMX19_04261at 621.836 kb on - strand, within MPMX19_04261at 621.836 kb on - strand, within MPMX19_04261at 621.836 kb on - strand, within MPMX19_04261at 621.836 kb on - strand, within MPMX19_04261at 621.836 kb on - strand, within MPMX19_04261at 621.895 kb on + strand, within MPMX19_04261at 621.895 kb on + strand, within MPMX19_04261at 621.910 kb on + strand, within MPMX19_04261at 621.910 kb on + strand, within MPMX19_04261at 621.910 kb on + strand, within MPMX19_04261at 621.910 kb on + strand, within MPMX19_04261at 621.911 kb on - strand, within MPMX19_04261at 622.168 kb on + strand, within MPMX19_04261at 622.168 kb on + strand, within MPMX19_04261at 622.169 kb on - strand, within MPMX19_04261at 622.169 kb on - strand, within MPMX19_04261at 622.169 kb on - strand, within MPMX19_04261at 622.169 kb on - strand, within MPMX19_04261at 622.169 kb on - strand, within MPMX19_04261at 622.169 kb on - strand, within MPMX19_04261at 622.169 kb on - strand, within MPMX19_04261at 622.177 kb on + strand, within MPMX19_04261at 622.306 kb on + strand, within MPMX19_04261at 622.306 kb on + strand, within MPMX19_04261at 622.306 kb on + strand, within MPMX19_04261at 622.306 kb on + strand, within MPMX19_04261at 622.306 kb on + strand, within MPMX19_04261at 622.307 kb on - strand, within MPMX19_04261at 622.307 kb on - strand, within MPMX19_04261at 622.375 kb on + strand, within MPMX19_04261at 622.375 kb on + strand, within MPMX19_04261at 622.375 kb on + strand, within MPMX19_04261at 622.375 kb on + strand, within MPMX19_04261at 622.376 kb on - strand, within MPMX19_04261at 622.460 kb on + strandat 622.461 kb on - strandat 622.461 kb on - strandat 622.483 kb on + strandat 622.484 kb on - strandat 622.484 kb on - strandat 622.484 kb on - strandat 622.485 kb on + strandat 622.485 kb on + strandat 622.485 kb on + strandat 622.485 kb on + strandat 622.485 kb on + strandat 622.486 kb on - strandat 622.486 kb on - strandat 622.486 kb on - strandat 622.486 kb on - strandat 622.486 kb on - strandat 622.486 kb on - strandat 622.486 kb on - strandat 622.486 kb on - strandat 622.486 kb on - strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.552 kb on + strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.555 kb on + strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.556 kb on - strandat 622.864 kb on + strand, within MPMX19_04262at 622.864 kb on + strand, within MPMX19_04262at 622.864 kb on + strand, within MPMX19_04262at 622.864 kb on + strand, within MPMX19_04262at 622.864 kb on + strand, within MPMX19_04262at 622.865 kb on - strand, within MPMX19_04262at 622.865 kb on - strand, within MPMX19_04262at 622.865 kb on - strand, within MPMX19_04262at 622.865 kb on - strand, within MPMX19_04262at 622.865 kb on - strand, within MPMX19_04262at 622.865 kb on - strand, within MPMX19_04262at 622.865 kb on - strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.137 kb on + strand, within MPMX19_04262at 623.138 kb on - strand, within MPMX19_04262at 623.138 kb on - strand, within MPMX19_04262at 623.138 kb on - strand, within MPMX19_04262at 623.138 kb on - strand, within MPMX19_04262at 623.215 kb on + strandat 623.215 kb on + strandat 623.215 kb on + strandat 623.215 kb on + strandat 623.215 kb on + strandat 623.215 kb on + strandat 623.215 kb on + strandat 623.215 kb on + strandat 623.215 kb on + strandat 623.215 kb on + strandat 623.216 kb on - strandat 623.216 kb on - strandat 623.216 kb on - strandat 623.216 kb on - strandat 623.254 kb on + strandat 623.254 kb on + strandat 623.254 kb on + strandat 623.255 kb on - strandat 623.263 kb on + strandat 623.264 kb on - strandat 623.271 kb on + strandat 623.271 kb on + strandat 623.272 kb on - strandat 623.281 kb on + strandat 623.283 kb on + strandat 623.283 kb on + strandat 623.284 kb on - strandat 623.295 kb on - strandat 623.305 kb on + strandat 623.305 kb on + strandat 623.305 kb on + strandat 623.305 kb on + strandat 623.305 kb on + strandat 623.306 kb on - strandat 623.306 kb on - strandat 623.306 kb on - strandat 623.355 kb on + strandat 623.355 kb on + strandat 623.355 kb on + strandat 623.355 kb on + strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strandat 623.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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621,123 + MPMX19_04260 0.62 -0.2
621,123 + MPMX19_04260 0.62 +0.8
621,123 + MPMX19_04260 0.62 -0.0
621,123 + MPMX19_04260 0.62 +1.4
621,123 + MPMX19_04260 0.62 +0.4
621,123 + MPMX19_04260 0.62 -0.6
621,123 + MPMX19_04260 0.62 -1.4
621,123 + MPMX19_04260 0.62 -2.6
621,124 - MPMX19_04260 0.62 -0.6
621,124 - MPMX19_04260 0.62 -0.1
621,124 - MPMX19_04260 0.62 -0.4
621,124 - MPMX19_04260 0.62 -2.7
621,124 - MPMX19_04260 0.62 +0.0
621,313 - MPMX19_04260 0.74 -0.1
621,399 + MPMX19_04260 0.79 -1.9
621,399 + MPMX19_04260 0.79 +0.1
621,399 + MPMX19_04260 0.79 +0.0
621,399 + MPMX19_04260 0.79 -0.8
621,399 + MPMX19_04260 0.79 -0.7
621,399 + MPMX19_04260 0.79 +0.2
621,400 - MPMX19_04260 0.79 -2.1
621,400 - MPMX19_04260 0.79 +0.6
621,400 - MPMX19_04260 0.79 -2.1
621,400 - MPMX19_04260 0.79 -0.1
621,735 + -1.9
621,735 + -0.3
621,735 + -0.1
621,736 - -1.3
621,736 - -0.4
621,756 - -0.1
621,835 + MPMX19_04261 0.13 +0.2
621,835 + MPMX19_04261 0.13 +1.8
621,835 + MPMX19_04261 0.13 +0.9
621,835 + MPMX19_04261 0.13 +0.4
621,835 + MPMX19_04261 0.13 -0.6
621,835 + MPMX19_04261 0.13 -2.1
621,835 + MPMX19_04261 0.13 +0.3
621,835 + MPMX19_04261 0.13 -0.6
621,835 + MPMX19_04261 0.13 -0.1
621,836 - MPMX19_04261 0.13 +0.4
621,836 - MPMX19_04261 0.13 +0.5
621,836 - MPMX19_04261 0.13 -0.1
621,836 - MPMX19_04261 0.13 +0.8
621,836 - MPMX19_04261 0.13 +0.1
621,836 - MPMX19_04261 0.13 +0.4
621,895 + MPMX19_04261 0.21 -1.0
621,895 + MPMX19_04261 0.21 +0.3
621,910 + MPMX19_04261 0.23 +0.4
621,910 + MPMX19_04261 0.23 +0.4
621,910 + MPMX19_04261 0.23 +1.0
621,910 + MPMX19_04261 0.23 -1.9
621,911 - MPMX19_04261 0.23 -0.0
622,168 + MPMX19_04261 0.58 -1.1
622,168 + MPMX19_04261 0.58 -0.0
622,169 - MPMX19_04261 0.58 +0.3
622,169 - MPMX19_04261 0.58 +0.7
622,169 - MPMX19_04261 0.58 -0.6
622,169 - MPMX19_04261 0.58 -0.2
622,169 - MPMX19_04261 0.58 -0.1
622,169 - MPMX19_04261 0.58 +0.2
622,169 - MPMX19_04261 0.58 +0.4
622,177 + MPMX19_04261 0.59 -0.8
622,306 + MPMX19_04261 0.77 -0.1
622,306 + MPMX19_04261 0.77 +0.4
622,306 + MPMX19_04261 0.77 +0.9
622,306 + MPMX19_04261 0.77 +0.4
622,306 + MPMX19_04261 0.77 -0.3
622,307 - MPMX19_04261 0.77 +1.2
622,307 - MPMX19_04261 0.77 +1.2
622,375 + MPMX19_04261 0.86 +0.6
622,375 + MPMX19_04261 0.86 +0.3
622,375 + MPMX19_04261 0.86 +0.8
622,375 + MPMX19_04261 0.86 +0.9
622,376 - MPMX19_04261 0.86 -0.9
622,460 + -2.1
622,461 - -0.2
622,461 - -0.6
622,483 + +0.0
622,484 - +1.8
622,484 - +0.8
622,484 - -2.1
622,485 + +0.6
622,485 + -0.1
622,485 + -0.3
622,485 + +0.2
622,485 + -1.4
622,486 - -0.8
622,486 - -1.5
622,486 - -0.1
622,486 - -1.1
622,486 - +0.4
622,486 - +0.0
622,486 - +0.4
622,486 - -1.1
622,486 - -0.3
622,552 + -0.5
622,552 + -2.9
622,552 + -0.5
622,552 + -1.0
622,552 + +1.0
622,552 + -0.1
622,552 + -0.5
622,552 + -0.9
622,552 + +1.0
622,552 + -0.5
622,552 + -0.5
622,552 + +0.7
622,552 + -2.5
622,552 + -0.0
622,552 + -0.8
622,552 + -1.1
622,552 + +0.7
622,552 + +0.5
622,552 + -1.9
622,552 + -0.2
622,552 + +1.0
622,553 - -0.5
622,553 - +0.0
622,553 - -0.9
622,553 - -0.1
622,553 - -2.1
622,553 - -3.0
622,553 - -0.5
622,553 - +1.9
622,553 - -0.7
622,553 - -1.0
622,553 - -0.3
622,553 - -0.9
622,553 - -0.5
622,553 - +0.5
622,553 - -1.1
622,555 + +0.5
622,555 + -0.9
622,555 + +0.6
622,555 + +1.3
622,555 + +0.5
622,555 + +0.2
622,555 + -0.5
622,555 + -0.5
622,555 + -0.5
622,555 + +0.2
622,555 + -0.3
622,555 + -0.1
622,555 + -2.0
622,555 + -0.1
622,555 + -0.3
622,555 + -0.0
622,555 + +0.2
622,556 - -0.0
622,556 - -0.9
622,556 - -0.8
622,556 - -0.3
622,556 - +0.5
622,556 - -2.7
622,556 - -0.8
622,556 - -3.1
622,556 - -0.4
622,556 - -1.7
622,556 - +0.0
622,556 - +0.1
622,864 + MPMX19_04262 0.48 -0.3
622,864 + MPMX19_04262 0.48 -1.5
622,864 + MPMX19_04262 0.48 +0.3
622,864 + MPMX19_04262 0.48 -1.0
622,864 + MPMX19_04262 0.48 -0.4
622,865 - MPMX19_04262 0.48 -0.5
622,865 - MPMX19_04262 0.48 -0.1
622,865 - MPMX19_04262 0.48 +2.5
622,865 - MPMX19_04262 0.48 -0.9
622,865 - MPMX19_04262 0.48 +1.5
622,865 - MPMX19_04262 0.48 -0.4
622,865 - MPMX19_04262 0.48 +2.3
623,137 + MPMX19_04262 0.87 +0.5
623,137 + MPMX19_04262 0.87 +0.5
623,137 + MPMX19_04262 0.87 +0.0
623,137 + MPMX19_04262 0.87 -0.9
623,137 + MPMX19_04262 0.87 -0.1
623,137 + MPMX19_04262 0.87 +0.6
623,137 + MPMX19_04262 0.87 -0.6
623,137 + MPMX19_04262 0.87 +0.7
623,137 + MPMX19_04262 0.87 -0.5
623,137 + MPMX19_04262 0.87 +0.2
623,137 + MPMX19_04262 0.87 -1.5
623,137 + MPMX19_04262 0.87 -0.5
623,137 + MPMX19_04262 0.87 -0.0
623,138 - MPMX19_04262 0.87 +1.8
623,138 - MPMX19_04262 0.87 +1.0
623,138 - MPMX19_04262 0.87 +0.9
623,138 - MPMX19_04262 0.87 +1.5
623,215 + -2.5
623,215 + -1.5
623,215 + -0.9
623,215 + +0.8
623,215 + +1.0
623,215 + +0.5
623,215 + +0.2
623,215 + +1.1
623,215 + -1.1
623,215 + -0.5
623,216 - -2.1
623,216 - -0.8
623,216 - +0.5
623,216 - -0.7
623,254 + +0.0
623,254 + +0.5
623,254 + -0.9
623,255 - -0.5
623,263 + +1.6
623,264 - -0.1
623,271 + -2.4
623,271 + -0.8
623,272 - -0.1
623,281 + -1.1
623,283 + +0.8
623,283 + +0.1
623,284 - -2.4
623,295 - -2.9
623,305 + +0.7
623,305 + +1.5
623,305 + -0.1
623,305 + -1.9
623,305 + -0.5
623,306 - +0.5
623,306 - -0.7
623,306 - +0.0
623,355 + +0.5
623,355 + +0.2
623,355 + +0.5
623,355 + -1.1
623,356 - +0.5
623,356 - +0.2
623,356 - +0.0
623,356 - +0.5
623,356 - -1.1
623,356 - -0.1
623,356 - -0.4
623,356 - +0.1
623,356 - -1.5
623,356 - -1.1
623,356 - +0.2
623,356 - -1.0
623,356 - +0.9
623,356 - -0.5

Or see this region's nucleotide sequence