Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03545

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03544 and MPMX19_03545 overlap by 1 nucleotidesMPMX19_03545 and MPMX19_03546 are separated by 107 nucleotides MPMX19_03544: MPMX19_03544 - N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase, at 964,220 to 965,431 _03544 MPMX19_03545: MPMX19_03545 - Ectoine hydrolase, at 965,431 to 966,570 _03545 MPMX19_03546: MPMX19_03546 - Succinyl-diaminopimelate desuccinylase, at 966,678 to 968,225 _03546 Position (kb) 965 966 967Strain fitness (log2 ratio) -2 -1 0 1 2 3at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.580 kb on + strand, within MPMX19_03544at 964.580 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 965.027 kb on + strand, within MPMX19_03544at 965.211 kb on - strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.268 kb on - strand, within MPMX19_03544at 965.268 kb on - strand, within MPMX19_03544at 965.268 kb on - strand, within MPMX19_03544at 965.339 kb on + strandat 965.339 kb on + strandat 965.339 kb on + strandat 965.339 kb on + strandat 965.339 kb on + strandat 965.378 kb on + strandat 965.379 kb on - strandat 965.379 kb on - strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.555 kb on - strand, within MPMX19_03545at 965.555 kb on - strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.774 kb on - strand, within MPMX19_03545at 966.163 kb on + strand, within MPMX19_03545at 966.163 kb on + strand, within MPMX19_03545at 966.164 kb on - strand, within MPMX19_03545at 966.164 kb on - strand, within MPMX19_03545at 966.346 kb on + strand, within MPMX19_03545at 966.364 kb on + strand, within MPMX19_03545at 966.364 kb on + strand, within MPMX19_03545at 966.379 kb on + strand, within MPMX19_03545at 966.380 kb on - strand, within MPMX19_03545at 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.469 kb on + strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.470 kb on - strandat 966.625 kb on + strandat 966.626 kb on - strandat 966.723 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.754 kb on + strandat 966.755 kb on - strandat 966.755 kb on - strandat 966.880 kb on + strand, within MPMX19_03546at 966.880 kb on + strand, within MPMX19_03546at 966.880 kb on + strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.881 kb on - strand, within MPMX19_03546at 966.994 kb on + strand, within MPMX19_03546at 966.994 kb on + strand, within MPMX19_03546at 966.994 kb on + strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 966.995 kb on - strand, within MPMX19_03546at 967.039 kb on + strand, within MPMX19_03546at 967.040 kb on - strand, within MPMX19_03546at 967.040 kb on - strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.222 kb on + strand, within MPMX19_03546at 967.223 kb on - strand, within MPMX19_03546at 967.223 kb on - strand, within MPMX19_03546at 967.223 kb on - strand, within MPMX19_03546at 967.339 kb on + strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.340 kb on - strand, within MPMX19_03546at 967.342 kb on + strand, within MPMX19_03546at 967.343 kb on - strand, within MPMX19_03546at 967.343 kb on - strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.424 kb on - strand, within MPMX19_03546

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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964,538 + MPMX19_03544 0.26 +0.9
964,538 + MPMX19_03544 0.26 +1.4
964,538 + MPMX19_03544 0.26 +0.4
964,538 + MPMX19_03544 0.26 -1.6
964,538 + MPMX19_03544 0.26 -0.7
964,539 - MPMX19_03544 0.26 -1.1
964,539 - MPMX19_03544 0.26 +0.4
964,539 - MPMX19_03544 0.26 -1.1
964,539 - MPMX19_03544 0.26 -1.3
964,539 - MPMX19_03544 0.26 -1.4
964,539 - MPMX19_03544 0.26 -0.1
964,539 - MPMX19_03544 0.26 -1.1
964,539 - MPMX19_03544 0.26 +0.1
964,580 + MPMX19_03544 0.30 +0.2
964,580 + MPMX19_03544 0.30 -0.1
964,646 + MPMX19_03544 0.35 -0.1
964,646 + MPMX19_03544 0.35 -1.4
964,646 + MPMX19_03544 0.35 -0.6
964,646 + MPMX19_03544 0.35 -0.6
964,646 + MPMX19_03544 0.35 +0.0
964,646 + MPMX19_03544 0.35 +0.8
964,646 + MPMX19_03544 0.35 -1.4
964,646 + MPMX19_03544 0.35 +0.2
964,646 + MPMX19_03544 0.35 -0.6
964,646 + MPMX19_03544 0.35 -0.2
964,647 - MPMX19_03544 0.35 -1.1
964,647 - MPMX19_03544 0.35 +0.2
964,647 - MPMX19_03544 0.35 -1.4
964,647 - MPMX19_03544 0.35 -0.9
964,647 - MPMX19_03544 0.35 +0.4
964,647 - MPMX19_03544 0.35 +0.2
964,647 - MPMX19_03544 0.35 -0.6
964,647 - MPMX19_03544 0.35 -0.2
964,647 - MPMX19_03544 0.35 -0.8
964,647 - MPMX19_03544 0.35 -1.1
964,647 - MPMX19_03544 0.35 +0.0
964,647 - MPMX19_03544 0.35 -0.8
965,027 + MPMX19_03544 0.67 +0.3
965,211 - MPMX19_03544 0.82 +0.7
965,267 + MPMX19_03544 0.86 +2.8
965,267 + MPMX19_03544 0.86 -0.9
965,267 + MPMX19_03544 0.86 -0.9
965,267 + MPMX19_03544 0.86 +0.9
965,267 + MPMX19_03544 0.86 -1.6
965,268 - MPMX19_03544 0.86 +0.4
965,268 - MPMX19_03544 0.86 +0.4
965,268 - MPMX19_03544 0.86 +0.1
965,339 + -0.4
965,339 + -0.3
965,339 + -0.9
965,339 + -0.2
965,339 + +0.8
965,378 + +0.1
965,379 - +1.1
965,379 - -1.9
965,399 + -0.7
965,399 + -1.6
965,399 + -0.8
965,399 + +0.0
965,399 + -0.4
965,399 + -0.6
965,399 + -1.2
965,399 + -0.0
965,399 + -0.6
965,399 + -0.9
965,399 + -0.2
965,399 + -0.1
965,399 + +0.1
965,399 + -0.6
965,399 + -0.6
965,400 - +0.0
965,400 - -1.1
965,400 - -0.6
965,400 - -0.3
965,400 - +0.3
965,400 - +0.7
965,555 - MPMX19_03545 0.11 -1.4
965,555 - MPMX19_03545 0.11 -1.4
965,773 + MPMX19_03545 0.30 -1.6
965,773 + MPMX19_03545 0.30 +0.2
965,773 + MPMX19_03545 0.30 -0.2
965,773 + MPMX19_03545 0.30 -1.1
965,773 + MPMX19_03545 0.30 +0.0
965,774 - MPMX19_03545 0.30 -1.4
966,163 + MPMX19_03545 0.64 -1.4
966,163 + MPMX19_03545 0.64 -0.4
966,164 - MPMX19_03545 0.64 -0.1
966,164 - MPMX19_03545 0.64 -0.8
966,346 + MPMX19_03545 0.80 -2.1
966,364 + MPMX19_03545 0.82 +0.4
966,364 + MPMX19_03545 0.82 -1.9
966,379 + MPMX19_03545 0.83 -0.0
966,380 - MPMX19_03545 0.83 +2.9
966,469 + -0.6
966,469 + +0.9
966,469 + -0.2
966,469 + -1.0
966,469 + +0.4
966,469 + -0.2
966,469 + +1.4
966,469 + +1.0
966,469 + -0.9
966,469 + +0.0
966,469 + -0.3
966,469 + -0.4
966,469 + -0.1
966,469 + +0.7
966,469 + -0.6
966,469 + -0.0
966,469 + -1.1
966,469 + +0.7
966,469 + +0.0
966,470 - +0.4
966,470 - -0.2
966,470 - -1.9
966,470 - -0.8
966,470 - +0.9
966,470 - -1.3
966,470 - -1.1
966,470 - -0.9
966,470 - -0.6
966,470 - +1.1
966,470 - -0.7
966,470 - -0.2
966,470 - -0.6
966,470 - -0.7
966,470 - -0.6
966,470 - -0.8
966,470 - +0.9
966,470 - +0.4
966,470 - +0.4
966,470 - +0.9
966,625 + -1.6
966,626 - -0.6
966,723 + -0.6
966,754 + -0.2
966,754 + +0.0
966,754 + -1.7
966,754 + -0.6
966,754 + +0.0
966,754 + -0.8
966,755 - +0.1
966,755 - -1.1
966,880 + MPMX19_03546 0.13 +0.2
966,880 + MPMX19_03546 0.13 -0.6
966,880 + MPMX19_03546 0.13 +0.8
966,881 - MPMX19_03546 0.13 -0.3
966,881 - MPMX19_03546 0.13 +0.7
966,881 - MPMX19_03546 0.13 +0.4
966,881 - MPMX19_03546 0.13 -0.6
966,881 - MPMX19_03546 0.13 -0.2
966,881 - MPMX19_03546 0.13 +0.4
966,994 + MPMX19_03546 0.20 +0.3
966,994 + MPMX19_03546 0.20 +0.2
966,994 + MPMX19_03546 0.20 -1.4
966,995 - MPMX19_03546 0.20 +0.5
966,995 - MPMX19_03546 0.20 -2.1
966,995 - MPMX19_03546 0.20 -0.9
966,995 - MPMX19_03546 0.20 +0.3
966,995 - MPMX19_03546 0.20 -0.7
966,995 - MPMX19_03546 0.20 -0.3
966,995 - MPMX19_03546 0.20 +0.1
967,039 + MPMX19_03546 0.23 +0.2
967,040 - MPMX19_03546 0.23 +1.0
967,040 - MPMX19_03546 0.23 -0.6
967,222 + MPMX19_03546 0.35 -0.1
967,222 + MPMX19_03546 0.35 -0.2
967,222 + MPMX19_03546 0.35 +0.3
967,222 + MPMX19_03546 0.35 -0.0
967,222 + MPMX19_03546 0.35 -1.3
967,222 + MPMX19_03546 0.35 -0.6
967,222 + MPMX19_03546 0.35 -0.1
967,223 - MPMX19_03546 0.35 +0.4
967,223 - MPMX19_03546 0.35 -1.4
967,223 - MPMX19_03546 0.35 +1.0
967,339 + MPMX19_03546 0.43 +0.5
967,340 - MPMX19_03546 0.43 -0.3
967,340 - MPMX19_03546 0.43 -0.3
967,340 - MPMX19_03546 0.43 +1.0
967,340 - MPMX19_03546 0.43 -0.6
967,340 - MPMX19_03546 0.43 +2.2
967,340 - MPMX19_03546 0.43 +0.4
967,342 + MPMX19_03546 0.43 -1.1
967,343 - MPMX19_03546 0.43 -0.9
967,343 - MPMX19_03546 0.43 -0.3
967,423 + MPMX19_03546 0.48 -0.2
967,423 + MPMX19_03546 0.48 -1.5
967,423 + MPMX19_03546 0.48 -1.1
967,423 + MPMX19_03546 0.48 -1.9
967,423 + MPMX19_03546 0.48 -0.1
967,423 + MPMX19_03546 0.48 -1.4
967,423 + MPMX19_03546 0.48 +1.1
967,423 + MPMX19_03546 0.48 +0.0
967,424 - MPMX19_03546 0.48 -0.1

Or see this region's nucleotide sequence