Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03417 and MPMX19_03418 overlap by 4 nucleotides MPMX19_03418 and MPMX19_03419 overlap by 37 nucleotides
MPMX19_03417: MPMX19_03417 - Protein ClpV1, at 807,089 to 809,740
_03417
MPMX19_03418: MPMX19_03418 - hypothetical protein, at 809,737 to 810,774
_03418
MPMX19_03419: MPMX19_03419 - hypothetical protein, at 810,738 to 812,534
_03419
Position (kb)
809
810
811 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 809.081 kb on + strand, within MPMX19_03417 at 809.081 kb on + strand, within MPMX19_03417 at 809.082 kb on - strand, within MPMX19_03417 at 809.082 kb on - strand, within MPMX19_03417 at 809.082 kb on - strand, within MPMX19_03417 at 809.151 kb on + strand, within MPMX19_03417 at 809.151 kb on + strand, within MPMX19_03417 at 809.151 kb on + strand, within MPMX19_03417 at 809.151 kb on + strand, within MPMX19_03417 at 809.151 kb on + strand, within MPMX19_03417 at 809.151 kb on + strand, within MPMX19_03417 at 809.151 kb on + strand, within MPMX19_03417 at 809.152 kb on - strand, within MPMX19_03417 at 809.152 kb on - strand, within MPMX19_03417 at 809.152 kb on - strand, within MPMX19_03417 at 809.152 kb on - strand, within MPMX19_03417 at 809.152 kb on - strand, within MPMX19_03417 at 809.152 kb on - strand, within MPMX19_03417 at 809.565 kb on + strand at 809.565 kb on + strand at 809.565 kb on + strand at 809.565 kb on + strand at 809.565 kb on + strand at 809.565 kb on + strand at 809.565 kb on + strand at 809.566 kb on - strand at 809.566 kb on - strand at 809.566 kb on - strand at 809.566 kb on - strand at 809.566 kb on - strand at 809.566 kb on - strand at 809.566 kb on - strand at 809.643 kb on + strand at 809.644 kb on - strand at 809.644 kb on - strand at 809.644 kb on - strand at 809.644 kb on - strand at 809.644 kb on - strand at 810.017 kb on + strand, within MPMX19_03418 at 810.017 kb on + strand, within MPMX19_03418 at 810.018 kb on - strand, within MPMX19_03418 at 810.387 kb on - strand, within MPMX19_03418 at 810.422 kb on + strand, within MPMX19_03418 at 810.422 kb on + strand, within MPMX19_03418 at 810.422 kb on + strand, within MPMX19_03418 at 810.422 kb on + strand, within MPMX19_03418 at 810.422 kb on + strand, within MPMX19_03418 at 810.423 kb on - strand, within MPMX19_03418 at 810.423 kb on - strand, within MPMX19_03418 at 810.423 kb on - strand, within MPMX19_03418 at 810.423 kb on - strand, within MPMX19_03418 at 810.423 kb on - strand, within MPMX19_03418 at 810.423 kb on - strand, within MPMX19_03418 at 810.423 kb on - strand, within MPMX19_03418 at 810.423 kb on - strand, within MPMX19_03418 at 810.485 kb on + strand, within MPMX19_03418 at 810.485 kb on + strand, within MPMX19_03418 at 810.485 kb on + strand, within MPMX19_03418 at 810.485 kb on + strand, within MPMX19_03418 at 810.485 kb on + strand, within MPMX19_03418 at 810.485 kb on + strand, within MPMX19_03418 at 810.486 kb on - strand, within MPMX19_03418 at 810.486 kb on - strand, within MPMX19_03418 at 810.486 kb on - strand, within MPMX19_03418 at 810.486 kb on - strand, within MPMX19_03418 at 810.486 kb on - strand, within MPMX19_03418 at 810.486 kb on - strand, within MPMX19_03418 at 810.486 kb on - strand, within MPMX19_03418 at 810.841 kb on + strand at 810.841 kb on + strand at 810.841 kb on + strand at 810.842 kb on - strand at 810.842 kb on - strand at 811.045 kb on + strand, within MPMX19_03419 at 811.045 kb on + strand, within MPMX19_03419 at 811.045 kb on + strand, within MPMX19_03419 at 811.045 kb on + strand, within MPMX19_03419 at 811.045 kb on + strand, within MPMX19_03419 at 811.046 kb on - strand, within MPMX19_03419 at 811.046 kb on - strand, within MPMX19_03419 at 811.046 kb on - strand, within MPMX19_03419 at 811.046 kb on - strand, within MPMX19_03419 at 811.046 kb on - strand, within MPMX19_03419 at 811.046 kb on - strand, within MPMX19_03419 at 811.046 kb on - strand, within MPMX19_03419 at 811.345 kb on + strand, within MPMX19_03419 at 811.345 kb on + strand, within MPMX19_03419 at 811.345 kb on + strand, within MPMX19_03419 at 811.345 kb on + strand, within MPMX19_03419 at 811.346 kb on - strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.456 kb on + strand, within MPMX19_03419 at 811.457 kb on - strand, within MPMX19_03419 at 811.457 kb on - strand, within MPMX19_03419 at 811.457 kb on - strand, within MPMX19_03419 at 811.457 kb on - strand, within MPMX19_03419 at 811.457 kb on - strand, within MPMX19_03419 at 811.457 kb on - strand, within MPMX19_03419 at 811.457 kb on - strand, within MPMX19_03419 at 811.457 kb on - strand, within MPMX19_03419 at 811.555 kb on + strand, within MPMX19_03419 at 811.741 kb on + strand, within MPMX19_03419 at 811.742 kb on - strand, within MPMX19_03419 at 811.771 kb on + strand, within MPMX19_03419 at 811.771 kb on + strand, within MPMX19_03419 at 811.771 kb on + strand, within MPMX19_03419 at 811.771 kb on + strand, within MPMX19_03419 at 811.772 kb on - strand, within MPMX19_03419
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 809,081 + MPMX19_03417 0.75 +0.8 809,081 + MPMX19_03417 0.75 +0.2 809,082 - MPMX19_03417 0.75 -1.3 809,082 - MPMX19_03417 0.75 -1.1 809,082 - MPMX19_03417 0.75 +1.4 809,151 + MPMX19_03417 0.78 -0.1 809,151 + MPMX19_03417 0.78 -2.1 809,151 + MPMX19_03417 0.78 -2.0 809,151 + MPMX19_03417 0.78 +0.4 809,151 + MPMX19_03417 0.78 +0.2 809,151 + MPMX19_03417 0.78 +1.2 809,151 + MPMX19_03417 0.78 -0.1 809,152 - MPMX19_03417 0.78 +0.6 809,152 - MPMX19_03417 0.78 -0.5 809,152 - MPMX19_03417 0.78 +0.0 809,152 - MPMX19_03417 0.78 -0.1 809,152 - MPMX19_03417 0.78 +0.2 809,152 - MPMX19_03417 0.78 +0.0 809,565 + -0.2 809,565 + +0.1 809,565 + -0.0 809,565 + -0.1 809,565 + +0.6 809,565 + -1.1 809,565 + -0.1 809,566 - +0.4 809,566 - -0.1 809,566 - +0.3 809,566 - +0.4 809,566 - +0.4 809,566 - -1.2 809,566 - -1.3 809,643 + -1.4 809,644 - -0.2 809,644 - +1.4 809,644 - +0.9 809,644 - -0.9 809,644 - -0.8 810,017 + MPMX19_03418 0.27 -0.2 810,017 + MPMX19_03418 0.27 +0.2 810,018 - MPMX19_03418 0.27 +0.7 810,387 - MPMX19_03418 0.63 +0.3 810,422 + MPMX19_03418 0.66 -1.3 810,422 + MPMX19_03418 0.66 +0.7 810,422 + MPMX19_03418 0.66 +0.1 810,422 + MPMX19_03418 0.66 +1.4 810,422 + MPMX19_03418 0.66 +0.4 810,423 - MPMX19_03418 0.66 +0.4 810,423 - MPMX19_03418 0.66 -0.4 810,423 - MPMX19_03418 0.66 +1.1 810,423 - MPMX19_03418 0.66 +0.6 810,423 - MPMX19_03418 0.66 -0.7 810,423 - MPMX19_03418 0.66 +0.2 810,423 - MPMX19_03418 0.66 +1.2 810,423 - MPMX19_03418 0.66 +0.2 810,485 + MPMX19_03418 0.72 +1.8 810,485 + MPMX19_03418 0.72 -1.1 810,485 + MPMX19_03418 0.72 +0.7 810,485 + MPMX19_03418 0.72 +0.9 810,485 + MPMX19_03418 0.72 +0.4 810,485 + MPMX19_03418 0.72 -1.9 810,486 - MPMX19_03418 0.72 +0.1 810,486 - MPMX19_03418 0.72 -1.0 810,486 - MPMX19_03418 0.72 -1.6 810,486 - MPMX19_03418 0.72 +0.8 810,486 - MPMX19_03418 0.72 -1.1 810,486 - MPMX19_03418 0.72 +1.3 810,486 - MPMX19_03418 0.72 -1.5 810,841 + -0.9 810,841 + -0.4 810,841 + +0.1 810,842 - +0.4 810,842 - +0.4 811,045 + MPMX19_03419 0.17 -0.8 811,045 + MPMX19_03419 0.17 +2.8 811,045 + MPMX19_03419 0.17 -0.6 811,045 + MPMX19_03419 0.17 -0.9 811,045 + MPMX19_03419 0.17 +1.7 811,046 - MPMX19_03419 0.17 -0.9 811,046 - MPMX19_03419 0.17 +0.0 811,046 - MPMX19_03419 0.17 -0.4 811,046 - MPMX19_03419 0.17 -0.1 811,046 - MPMX19_03419 0.17 +0.7 811,046 - MPMX19_03419 0.17 -0.0 811,046 - MPMX19_03419 0.17 +0.8 811,345 + MPMX19_03419 0.34 -1.4 811,345 + MPMX19_03419 0.34 +0.0 811,345 + MPMX19_03419 0.34 +0.1 811,345 + MPMX19_03419 0.34 +0.9 811,346 - MPMX19_03419 0.34 +0.9 811,456 + MPMX19_03419 0.40 +0.4 811,456 + MPMX19_03419 0.40 -0.6 811,456 + MPMX19_03419 0.40 -1.7 811,456 + MPMX19_03419 0.40 -1.6 811,456 + MPMX19_03419 0.40 +0.4 811,456 + MPMX19_03419 0.40 -1.3 811,456 + MPMX19_03419 0.40 -0.8 811,456 + MPMX19_03419 0.40 +0.4 811,456 + MPMX19_03419 0.40 -1.1 811,456 + MPMX19_03419 0.40 -1.1 811,456 + MPMX19_03419 0.40 -2.1 811,456 + MPMX19_03419 0.40 -2.1 811,456 + MPMX19_03419 0.40 -0.7 811,456 + MPMX19_03419 0.40 +1.0 811,456 + MPMX19_03419 0.40 +0.9 811,456 + MPMX19_03419 0.40 +0.6 811,456 + MPMX19_03419 0.40 -0.4 811,456 + MPMX19_03419 0.40 +0.0 811,456 + MPMX19_03419 0.40 -0.6 811,456 + MPMX19_03419 0.40 +0.6 811,457 - MPMX19_03419 0.40 -0.1 811,457 - MPMX19_03419 0.40 +0.1 811,457 - MPMX19_03419 0.40 -2.1 811,457 - MPMX19_03419 0.40 -0.1 811,457 - MPMX19_03419 0.40 -2.1 811,457 - MPMX19_03419 0.40 -0.1 811,457 - MPMX19_03419 0.40 -1.1 811,457 - MPMX19_03419 0.40 -0.3 811,555 + MPMX19_03419 0.45 +0.2 811,741 + MPMX19_03419 0.56 -0.5 811,742 - MPMX19_03419 0.56 +0.6 811,771 + MPMX19_03419 0.57 -0.9 811,771 + MPMX19_03419 0.57 +0.8 811,771 + MPMX19_03419 0.57 +1.0 811,771 + MPMX19_03419 0.57 -1.0 811,772 - MPMX19_03419 0.58 -0.3
Or see this region's nucleotide sequence