Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03104

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03103 and MPMX19_03104 are separated by 21 nucleotidesMPMX19_03104 and MPMX19_03105 are separated by 5 nucleotides MPMX19_03103: MPMX19_03103 - hypothetical protein, at 372,784 to 375,354 _03103 MPMX19_03104: MPMX19_03104 - hypothetical protein, at 375,376 to 376,509 _03104 MPMX19_03105: MPMX19_03105 - hypothetical protein, at 376,515 to 386,258 _03105 Position (kb) 375 376 377Strain fitness (log2 ratio) -2 -1 0 1at 374.811 kb on + strand, within MPMX19_03103at 374.812 kb on - strand, within MPMX19_03103at 374.812 kb on - strand, within MPMX19_03103at 374.812 kb on - strand, within MPMX19_03103at 374.812 kb on - strand, within MPMX19_03103at 374.854 kb on + strand, within MPMX19_03103at 374.961 kb on + strand, within MPMX19_03103at 374.962 kb on - strand, within MPMX19_03103at 374.962 kb on - strand, within MPMX19_03103at 374.962 kb on - strand, within MPMX19_03103at 375.005 kb on + strand, within MPMX19_03103at 375.006 kb on - strand, within MPMX19_03103at 375.157 kb on + strandat 375.157 kb on + strandat 375.157 kb on + strandat 375.157 kb on + strandat 375.158 kb on - strandat 375.158 kb on - strandat 375.158 kb on - strandat 375.158 kb on - strandat 375.532 kb on + strand, within MPMX19_03104at 375.533 kb on - strand, within MPMX19_03104at 375.533 kb on - strand, within MPMX19_03104at 375.745 kb on + strand, within MPMX19_03104at 375.745 kb on + strand, within MPMX19_03104at 375.745 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.823 kb on + strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 375.824 kb on - strand, within MPMX19_03104at 376.201 kb on + strand, within MPMX19_03104at 376.201 kb on + strand, within MPMX19_03104at 376.202 kb on - strand, within MPMX19_03104at 376.202 kb on - strand, within MPMX19_03104at 376.749 kb on + strandat 376.749 kb on + strandat 376.749 kb on + strandat 376.749 kb on + strandat 376.749 kb on + strandat 376.749 kb on + strandat 376.749 kb on + strandat 376.750 kb on - strandat 376.750 kb on - strandat 376.750 kb on - strandat 376.750 kb on - strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.034 kb on + strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.035 kb on - strandat 377.478 kb on + strandat 377.478 kb on + strandat 377.478 kb on + strandat 377.478 kb on + strandat 377.478 kb on + strandat 377.478 kb on + strandat 377.479 kb on - strandat 377.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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374,811 + MPMX19_03103 0.79 -0.8
374,812 - MPMX19_03103 0.79 -2.5
374,812 - MPMX19_03103 0.79 +0.4
374,812 - MPMX19_03103 0.79 -1.1
374,812 - MPMX19_03103 0.79 -1.1
374,854 + MPMX19_03103 0.81 +0.2
374,961 + MPMX19_03103 0.85 +0.3
374,962 - MPMX19_03103 0.85 +0.5
374,962 - MPMX19_03103 0.85 -1.1
374,962 - MPMX19_03103 0.85 +0.5
375,005 + MPMX19_03103 0.86 -1.3
375,006 - MPMX19_03103 0.86 +1.2
375,157 + +0.1
375,157 + +1.2
375,157 + -0.0
375,157 + -0.5
375,158 - -0.1
375,158 - +1.1
375,158 - -0.6
375,158 - -0.2
375,532 + MPMX19_03104 0.14 +1.7
375,533 - MPMX19_03104 0.14 +0.5
375,533 - MPMX19_03104 0.14 +0.5
375,745 + MPMX19_03104 0.33 +1.5
375,745 + MPMX19_03104 0.33 +0.7
375,745 + MPMX19_03104 0.33 -0.1
375,823 + MPMX19_03104 0.39 +1.5
375,823 + MPMX19_03104 0.39 -1.4
375,823 + MPMX19_03104 0.39 -0.3
375,823 + MPMX19_03104 0.39 -0.5
375,823 + MPMX19_03104 0.39 +0.2
375,823 + MPMX19_03104 0.39 +0.6
375,823 + MPMX19_03104 0.39 -1.1
375,823 + MPMX19_03104 0.39 +1.3
375,823 + MPMX19_03104 0.39 -0.5
375,823 + MPMX19_03104 0.39 -0.0
375,823 + MPMX19_03104 0.39 +1.1
375,823 + MPMX19_03104 0.39 +0.9
375,823 + MPMX19_03104 0.39 +0.1
375,823 + MPMX19_03104 0.39 -1.5
375,823 + MPMX19_03104 0.39 -0.5
375,823 + MPMX19_03104 0.39 -0.9
375,823 + MPMX19_03104 0.39 -0.5
375,823 + MPMX19_03104 0.39 +0.2
375,824 - MPMX19_03104 0.40 -0.7
375,824 - MPMX19_03104 0.40 -0.9
375,824 - MPMX19_03104 0.40 -0.2
375,824 - MPMX19_03104 0.40 +1.3
375,824 - MPMX19_03104 0.40 +1.0
375,824 - MPMX19_03104 0.40 +1.3
375,824 - MPMX19_03104 0.40 +0.4
375,824 - MPMX19_03104 0.40 +0.9
375,824 - MPMX19_03104 0.40 -0.2
375,824 - MPMX19_03104 0.40 -0.3
375,824 - MPMX19_03104 0.40 -0.2
375,824 - MPMX19_03104 0.40 -0.2
375,824 - MPMX19_03104 0.40 -0.5
375,824 - MPMX19_03104 0.40 +1.1
375,824 - MPMX19_03104 0.40 -0.2
375,824 - MPMX19_03104 0.40 +0.8
375,824 - MPMX19_03104 0.40 +0.6
375,824 - MPMX19_03104 0.40 -1.1
375,824 - MPMX19_03104 0.40 +0.5
375,824 - MPMX19_03104 0.40 +1.1
375,824 - MPMX19_03104 0.40 +1.5
375,824 - MPMX19_03104 0.40 +0.2
375,824 - MPMX19_03104 0.40 -0.7
375,824 - MPMX19_03104 0.40 -0.5
375,824 - MPMX19_03104 0.40 -0.5
375,824 - MPMX19_03104 0.40 -0.8
375,824 - MPMX19_03104 0.40 -0.1
375,824 - MPMX19_03104 0.40 -0.3
376,201 + MPMX19_03104 0.73 +0.9
376,201 + MPMX19_03104 0.73 +0.9
376,202 - MPMX19_03104 0.73 +1.1
376,202 - MPMX19_03104 0.73 -0.0
376,749 + +0.1
376,749 + +1.2
376,749 + -0.5
376,749 + +1.2
376,749 + +0.7
376,749 + +0.6
376,749 + -0.3
376,750 - -0.5
376,750 - +1.1
376,750 - +0.1
376,750 - -0.2
376,956 + +1.3
376,956 + +0.5
376,956 + -0.8
376,956 + -1.5
376,956 + -0.2
376,956 + -0.1
377,034 + -0.4
377,034 + +0.5
377,034 + +0.5
377,034 + -0.7
377,034 + +0.1
377,034 + +1.1
377,034 + -0.3
377,034 + +0.0
377,034 + +0.5
377,034 + +1.2
377,034 + -1.8
377,034 + -0.5
377,034 + +0.5
377,034 + -0.5
377,034 + -0.8
377,034 + -0.7
377,034 + -1.3
377,035 - +1.1
377,035 - -0.1
377,035 - +0.7
377,035 - -1.3
377,035 - +0.9
377,035 - -0.8
377,035 - -1.8
377,035 - +0.9
377,035 - +0.2
377,035 - -0.8
377,035 - -0.8
377,035 - -0.0
377,035 - +0.9
377,478 + +0.9
377,478 + -0.8
377,478 + +1.0
377,478 + +0.1
377,478 + +0.1
377,478 + -0.7
377,479 - +1.3
377,479 - +0.3

Or see this region's nucleotide sequence