Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02885 and MPMX19_02886 are separated by 322 nucleotides MPMX19_02886 and MPMX19_02887 are separated by 131 nucleotides
MPMX19_02885: MPMX19_02885 - Citrate transporter, at 134,883 to 136,229
_02885
MPMX19_02886: MPMX19_02886 - HTH-type transcriptional regulator CynR, at 136,552 to 137,484
_02886
MPMX19_02887: MPMX19_02887 - Methyl-accepting chemotaxis protein, at 137,616 to 139,310
_02887
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.644 kb on + strand, within MPMX19_02885 at 135.844 kb on + strand, within MPMX19_02885 at 135.844 kb on + strand, within MPMX19_02885 at 135.844 kb on + strand, within MPMX19_02885 at 135.844 kb on + strand, within MPMX19_02885 at 135.844 kb on + strand, within MPMX19_02885 at 135.845 kb on - strand, within MPMX19_02885 at 135.845 kb on - strand, within MPMX19_02885 at 136.046 kb on + strand, within MPMX19_02885 at 136.046 kb on + strand, within MPMX19_02885 at 136.047 kb on - strand, within MPMX19_02885 at 136.047 kb on - strand, within MPMX19_02885 at 136.047 kb on - strand, within MPMX19_02885 at 136.047 kb on - strand, within MPMX19_02885 at 136.231 kb on + strand at 136.231 kb on + strand at 136.231 kb on + strand at 136.231 kb on + strand at 136.231 kb on + strand at 136.231 kb on + strand at 136.231 kb on + strand at 136.232 kb on - strand at 136.232 kb on - strand at 136.232 kb on - strand at 136.232 kb on - strand at 136.232 kb on - strand at 136.232 kb on - strand at 136.254 kb on - strand at 136.422 kb on + strand at 136.477 kb on + strand at 136.478 kb on - strand at 136.478 kb on - strand at 136.515 kb on + strand at 136.516 kb on - strand at 136.516 kb on - strand at 136.516 kb on - strand at 136.534 kb on + strand at 136.539 kb on + strand at 136.539 kb on + strand at 136.572 kb on + strand at 136.572 kb on + strand at 136.573 kb on - strand at 136.573 kb on - strand at 136.573 kb on - strand at 136.573 kb on - strand at 136.573 kb on - strand at 136.573 kb on - strand at 136.573 kb on - strand at 136.573 kb on - strand at 136.573 kb on - strand at 136.573 kb on - strand at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.527 kb on - strand at 137.527 kb on - strand at 137.527 kb on - strand at 137.569 kb on + strand at 137.575 kb on - strand at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.896 kb on - strand, within MPMX19_02887 at 137.896 kb on - strand, within MPMX19_02887 at 137.896 kb on - strand, within MPMX19_02887 at 137.907 kb on + strand, within MPMX19_02887 at 137.908 kb on - strand, within MPMX19_02887 at 137.908 kb on - strand, within MPMX19_02887 at 137.997 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.115 kb on - strand, within MPMX19_02887 at 138.150 kb on + strand, within MPMX19_02887 at 138.151 kb on - strand, within MPMX19_02887 at 138.151 kb on - strand, within MPMX19_02887 at 138.175 kb on - strand, within MPMX19_02887 at 138.232 kb on + strand, within MPMX19_02887 at 138.232 kb on + strand, within MPMX19_02887 at 138.233 kb on - strand, within MPMX19_02887 at 138.233 kb on - strand, within MPMX19_02887
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 135,644 + MPMX19_02885 0.56 -0.7 135,844 + MPMX19_02885 0.71 +0.3 135,844 + MPMX19_02885 0.71 -0.0 135,844 + MPMX19_02885 0.71 -0.2 135,844 + MPMX19_02885 0.71 -0.4 135,844 + MPMX19_02885 0.71 +0.2 135,845 - MPMX19_02885 0.71 +0.2 135,845 - MPMX19_02885 0.71 -0.6 136,046 + MPMX19_02885 0.86 +0.9 136,046 + MPMX19_02885 0.86 -0.6 136,047 - MPMX19_02885 0.86 +0.6 136,047 - MPMX19_02885 0.86 +0.0 136,047 - MPMX19_02885 0.86 -0.4 136,047 - MPMX19_02885 0.86 -0.6 136,231 + -1.1 136,231 + -2.4 136,231 + -0.2 136,231 + +0.4 136,231 + -3.4 136,231 + +0.4 136,231 + +0.8 136,232 - -0.7 136,232 - -0.9 136,232 - -2.1 136,232 - -3.0 136,232 - -0.2 136,232 - +0.3 136,254 - -1.0 136,422 + -0.6 136,477 + -2.4 136,478 - -2.4 136,478 - -0.4 136,515 + -2.1 136,516 - -1.0 136,516 - -0.0 136,516 - +1.4 136,534 + +0.7 136,539 + -0.1 136,539 + -0.9 136,572 + -1.5 136,572 + +1.1 136,573 - -1.0 136,573 - +0.8 136,573 - -0.3 136,573 - -0.1 136,573 - -2.4 136,573 - -0.6 136,573 - +0.0 136,573 - -1.7 136,573 - -0.4 136,573 - +0.4 137,224 + MPMX19_02886 0.72 +0.4 137,224 + MPMX19_02886 0.72 +0.4 137,224 + MPMX19_02886 0.72 +0.3 137,224 + MPMX19_02886 0.72 +1.6 137,224 + MPMX19_02886 0.72 -0.6 137,224 + MPMX19_02886 0.72 -0.6 137,224 + MPMX19_02886 0.72 -0.3 137,224 + MPMX19_02886 0.72 -0.3 137,224 + MPMX19_02886 0.72 -0.2 137,224 + MPMX19_02886 0.72 +0.1 137,224 + MPMX19_02886 0.72 -0.9 137,224 + MPMX19_02886 0.72 +0.6 137,224 + MPMX19_02886 0.72 +0.7 137,224 + MPMX19_02886 0.72 +0.3 137,224 + MPMX19_02886 0.72 +0.2 137,224 + MPMX19_02886 0.72 -0.0 137,224 + MPMX19_02886 0.72 +0.4 137,224 + MPMX19_02886 0.72 +0.1 137,224 + MPMX19_02886 0.72 +1.7 137,224 + MPMX19_02886 0.72 +0.4 137,224 + MPMX19_02886 0.72 -0.6 137,224 + MPMX19_02886 0.72 +1.4 137,224 + MPMX19_02886 0.72 -0.2 137,225 - MPMX19_02886 0.72 +0.0 137,225 - MPMX19_02886 0.72 +0.9 137,225 - MPMX19_02886 0.72 +1.9 137,225 - MPMX19_02886 0.72 -2.7 137,225 - MPMX19_02886 0.72 -0.2 137,225 - MPMX19_02886 0.72 +0.2 137,225 - MPMX19_02886 0.72 -1.6 137,225 - MPMX19_02886 0.72 +0.2 137,225 - MPMX19_02886 0.72 +0.4 137,225 - MPMX19_02886 0.72 +0.0 137,225 - MPMX19_02886 0.72 +1.1 137,225 - MPMX19_02886 0.72 -0.0 137,225 - MPMX19_02886 0.72 +0.1 137,225 - MPMX19_02886 0.72 +0.1 137,225 - MPMX19_02886 0.72 +1.3 137,225 - MPMX19_02886 0.72 +0.9 137,225 - MPMX19_02886 0.72 -0.2 137,521 + -0.2 137,521 + -0.1 137,521 + -1.4 137,521 + -0.1 137,521 + +0.7 137,521 + -0.9 137,522 - -0.1 137,522 - -1.1 137,522 - +0.7 137,522 - +0.6 137,522 - +1.7 137,522 - -0.4 137,522 - -0.4 137,522 - +0.4 137,522 - -1.1 137,522 - -0.1 137,522 - -0.6 137,523 + +0.1 137,523 + +0.2 137,523 + -1.3 137,523 + -1.6 137,524 - -0.7 137,524 - +0.4 137,524 - -0.3 137,524 - +0.0 137,527 - +1.3 137,527 - -1.4 137,527 - +0.4 137,569 + -0.3 137,575 - -0.3 137,877 + MPMX19_02887 0.15 -0.2 137,877 + MPMX19_02887 0.15 +0.9 137,877 + MPMX19_02887 0.15 -0.3 137,877 + MPMX19_02887 0.15 -0.3 137,877 + MPMX19_02887 0.15 -0.8 137,877 + MPMX19_02887 0.15 -0.2 137,878 - MPMX19_02887 0.15 -0.3 137,878 - MPMX19_02887 0.15 -0.1 137,878 - MPMX19_02887 0.15 +0.1 137,878 - MPMX19_02887 0.15 +0.0 137,878 - MPMX19_02887 0.15 +0.1 137,878 - MPMX19_02887 0.15 -0.1 137,896 - MPMX19_02887 0.17 -1.1 137,896 - MPMX19_02887 0.17 -0.1 137,896 - MPMX19_02887 0.17 -0.2 137,907 + MPMX19_02887 0.17 +1.8 137,908 - MPMX19_02887 0.17 +0.3 137,908 - MPMX19_02887 0.17 +1.0 137,997 + MPMX19_02887 0.22 +1.4 138,054 + MPMX19_02887 0.26 -0.8 138,054 + MPMX19_02887 0.26 +0.2 138,054 + MPMX19_02887 0.26 -1.0 138,054 + MPMX19_02887 0.26 +0.0 138,054 + MPMX19_02887 0.26 +1.2 138,054 + MPMX19_02887 0.26 -0.1 138,054 + MPMX19_02887 0.26 -0.1 138,054 + MPMX19_02887 0.26 +0.1 138,054 + MPMX19_02887 0.26 +0.2 138,054 + MPMX19_02887 0.26 +1.0 138,054 + MPMX19_02887 0.26 -0.2 138,054 + MPMX19_02887 0.26 +0.3 138,054 + MPMX19_02887 0.26 +0.8 138,054 + MPMX19_02887 0.26 +0.4 138,054 + MPMX19_02887 0.26 -0.0 138,055 - MPMX19_02887 0.26 -0.4 138,055 - MPMX19_02887 0.26 -1.1 138,055 - MPMX19_02887 0.26 +0.3 138,055 - MPMX19_02887 0.26 +0.0 138,055 - MPMX19_02887 0.26 -0.6 138,055 - MPMX19_02887 0.26 +0.3 138,055 - MPMX19_02887 0.26 +1.8 138,055 - MPMX19_02887 0.26 +0.2 138,055 - MPMX19_02887 0.26 +0.2 138,055 - MPMX19_02887 0.26 -0.4 138,055 - MPMX19_02887 0.26 -0.6 138,055 - MPMX19_02887 0.26 +2.0 138,102 + MPMX19_02887 0.29 -3.1 138,102 + MPMX19_02887 0.29 -0.6 138,102 + MPMX19_02887 0.29 -0.9 138,102 + MPMX19_02887 0.29 +0.2 138,102 + MPMX19_02887 0.29 -0.7 138,102 + MPMX19_02887 0.29 -0.7 138,102 + MPMX19_02887 0.29 +0.0 138,102 + MPMX19_02887 0.29 -0.3 138,102 + MPMX19_02887 0.29 -1.1 138,102 + MPMX19_02887 0.29 -0.9 138,102 + MPMX19_02887 0.29 -0.9 138,102 + MPMX19_02887 0.29 +0.8 138,103 - MPMX19_02887 0.29 +0.2 138,103 - MPMX19_02887 0.29 -0.2 138,103 - MPMX19_02887 0.29 +0.4 138,103 - MPMX19_02887 0.29 -0.2 138,103 - MPMX19_02887 0.29 -1.4 138,103 - MPMX19_02887 0.29 -0.6 138,115 - MPMX19_02887 0.29 +0.1 138,150 + MPMX19_02887 0.32 -0.8 138,151 - MPMX19_02887 0.32 +0.4 138,151 - MPMX19_02887 0.32 -0.1 138,175 - MPMX19_02887 0.33 -0.4 138,232 + MPMX19_02887 0.36 -1.1 138,232 + MPMX19_02887 0.36 -0.2 138,233 - MPMX19_02887 0.36 -1.0 138,233 - MPMX19_02887 0.36 +0.7
Or see this region's nucleotide sequence