Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02872

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02871 and MPMX19_02872 are separated by 216 nucleotidesMPMX19_02872 and MPMX19_02873 are separated by 163 nucleotides MPMX19_02871: MPMX19_02871 - HTH-type transcriptional activator RhaR, at 121,114 to 122,070 _02871 MPMX19_02872: MPMX19_02872 - Sigma factor SigB regulation protein RsbQ, at 122,287 to 123,093 _02872 MPMX19_02873: MPMX19_02873 - Acetyl esterase, at 123,257 to 124,261 _02873 Position (kb) 122 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 121.352 kb on + strand, within MPMX19_02871at 121.536 kb on - strand, within MPMX19_02871at 121.536 kb on - strand, within MPMX19_02871at 121.583 kb on + strand, within MPMX19_02871at 121.583 kb on + strand, within MPMX19_02871at 121.583 kb on + strand, within MPMX19_02871at 121.583 kb on + strand, within MPMX19_02871at 121.583 kb on + strand, within MPMX19_02871at 121.584 kb on - strand, within MPMX19_02871at 121.584 kb on - strand, within MPMX19_02871at 121.744 kb on + strand, within MPMX19_02871at 121.744 kb on + strand, within MPMX19_02871at 121.744 kb on + strand, within MPMX19_02871at 121.745 kb on - strand, within MPMX19_02871at 121.745 kb on - strand, within MPMX19_02871at 121.745 kb on - strand, within MPMX19_02871at 121.803 kb on - strand, within MPMX19_02871at 122.033 kb on + strandat 122.033 kb on + strandat 122.033 kb on + strandat 122.033 kb on + strandat 122.034 kb on - strandat 122.141 kb on + strandat 122.141 kb on + strandat 122.142 kb on - strandat 122.142 kb on - strandat 122.168 kb on + strandat 122.168 kb on + strandat 122.169 kb on - strandat 122.195 kb on + strandat 122.210 kb on + strandat 122.211 kb on - strandat 122.211 kb on - strandat 122.223 kb on - strandat 122.249 kb on + strandat 122.260 kb on + strandat 122.279 kb on + strandat 122.280 kb on - strandat 122.280 kb on - strandat 122.280 kb on - strandat 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.633 kb on + strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.634 kb on - strand, within MPMX19_02872at 122.703 kb on + strand, within MPMX19_02872at 122.711 kb on + strand, within MPMX19_02872at 122.864 kb on + strand, within MPMX19_02872at 122.864 kb on + strand, within MPMX19_02872at 122.864 kb on + strand, within MPMX19_02872at 122.864 kb on + strand, within MPMX19_02872at 122.864 kb on + strand, within MPMX19_02872at 122.864 kb on + strand, within MPMX19_02872at 122.864 kb on + strand, within MPMX19_02872at 122.865 kb on - strand, within MPMX19_02872at 122.865 kb on - strand, within MPMX19_02872at 122.865 kb on - strand, within MPMX19_02872at 122.865 kb on - strand, within MPMX19_02872at 122.865 kb on - strand, within MPMX19_02872at 122.865 kb on - strand, within MPMX19_02872at 122.865 kb on - strand, within MPMX19_02872at 122.882 kb on + strand, within MPMX19_02872at 122.882 kb on + strand, within MPMX19_02872at 122.882 kb on + strand, within MPMX19_02872at 122.882 kb on + strand, within MPMX19_02872at 122.882 kb on + strand, within MPMX19_02872at 122.883 kb on - strand, within MPMX19_02872at 122.883 kb on - strand, within MPMX19_02872at 122.883 kb on - strand, within MPMX19_02872at 122.883 kb on - strand, within MPMX19_02872at 122.883 kb on - strand, within MPMX19_02872at 122.883 kb on - strand, within MPMX19_02872at 122.897 kb on + strand, within MPMX19_02872at 122.897 kb on + strand, within MPMX19_02872at 122.897 kb on + strand, within MPMX19_02872at 122.898 kb on - strand, within MPMX19_02872at 122.898 kb on - strand, within MPMX19_02872at 122.898 kb on - strand, within MPMX19_02872at 122.898 kb on - strand, within MPMX19_02872at 122.898 kb on - strand, within MPMX19_02872at 122.898 kb on - strand, within MPMX19_02872at 122.898 kb on - strand, within MPMX19_02872at 122.898 kb on - strand, within MPMX19_02872at 122.952 kb on - strand, within MPMX19_02872at 123.133 kb on - strandat 123.133 kb on - strandat 123.549 kb on + strand, within MPMX19_02873at 123.549 kb on + strand, within MPMX19_02873at 123.549 kb on + strand, within MPMX19_02873at 123.549 kb on + strand, within MPMX19_02873at 123.549 kb on + strand, within MPMX19_02873at 123.549 kb on + strand, within MPMX19_02873at 123.549 kb on + strand, within MPMX19_02873at 123.550 kb on - strand, within MPMX19_02873at 123.550 kb on - strand, within MPMX19_02873at 123.550 kb on - strand, within MPMX19_02873at 123.550 kb on - strand, within MPMX19_02873at 123.550 kb on - strand, within MPMX19_02873at 123.550 kb on - strand, within MPMX19_02873at 123.562 kb on - strand, within MPMX19_02873at 123.651 kb on + strand, within MPMX19_02873at 123.652 kb on - strand, within MPMX19_02873at 123.862 kb on - strand, within MPMX19_02873at 123.963 kb on + strand, within MPMX19_02873at 123.963 kb on + strand, within MPMX19_02873at 123.963 kb on + strand, within MPMX19_02873at 123.963 kb on + strand, within MPMX19_02873at 123.963 kb on + strand, within MPMX19_02873at 123.964 kb on - strand, within MPMX19_02873at 123.964 kb on - strand, within MPMX19_02873at 123.964 kb on - strand, within MPMX19_02873at 123.964 kb on - strand, within MPMX19_02873

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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121,352 + MPMX19_02871 0.25 -1.6
121,536 - MPMX19_02871 0.44 -0.1
121,536 - MPMX19_02871 0.44 +0.0
121,583 + MPMX19_02871 0.49 -0.4
121,583 + MPMX19_02871 0.49 -1.1
121,583 + MPMX19_02871 0.49 +0.8
121,583 + MPMX19_02871 0.49 -1.1
121,583 + MPMX19_02871 0.49 +0.4
121,584 - MPMX19_02871 0.49 +0.3
121,584 - MPMX19_02871 0.49 -1.2
121,744 + MPMX19_02871 0.66 +0.0
121,744 + MPMX19_02871 0.66 -0.9
121,744 + MPMX19_02871 0.66 -0.3
121,745 - MPMX19_02871 0.66 -1.1
121,745 - MPMX19_02871 0.66 -0.9
121,745 - MPMX19_02871 0.66 -1.6
121,803 - MPMX19_02871 0.72 +2.0
122,033 + -0.3
122,033 + -2.6
122,033 + +1.9
122,033 + -0.3
122,034 - +0.1
122,141 + -0.3
122,141 + +1.2
122,142 - +0.4
122,142 - +1.2
122,168 + -0.6
122,168 + -1.0
122,169 - -2.6
122,195 + -0.6
122,210 + +1.6
122,211 - -3.1
122,211 - -3.5
122,223 - +1.1
122,249 + +0.2
122,260 + -1.0
122,279 + +0.4
122,280 - -0.8
122,280 - -0.4
122,280 - -0.6
122,633 + MPMX19_02872 0.43 +0.1
122,633 + MPMX19_02872 0.43 -1.6
122,633 + MPMX19_02872 0.43 +0.9
122,633 + MPMX19_02872 0.43 -0.6
122,633 + MPMX19_02872 0.43 -1.0
122,633 + MPMX19_02872 0.43 -1.8
122,633 + MPMX19_02872 0.43 -0.1
122,633 + MPMX19_02872 0.43 +1.4
122,633 + MPMX19_02872 0.43 +0.1
122,633 + MPMX19_02872 0.43 +0.4
122,633 + MPMX19_02872 0.43 -0.3
122,633 + MPMX19_02872 0.43 +0.4
122,633 + MPMX19_02872 0.43 +0.1
122,634 - MPMX19_02872 0.43 -0.2
122,634 - MPMX19_02872 0.43 -0.6
122,634 - MPMX19_02872 0.43 -0.7
122,634 - MPMX19_02872 0.43 +0.4
122,634 - MPMX19_02872 0.43 +1.0
122,634 - MPMX19_02872 0.43 -0.2
122,634 - MPMX19_02872 0.43 -0.1
122,634 - MPMX19_02872 0.43 +0.0
122,634 - MPMX19_02872 0.43 -0.3
122,634 - MPMX19_02872 0.43 -1.9
122,634 - MPMX19_02872 0.43 +0.0
122,634 - MPMX19_02872 0.43 -2.1
122,703 + MPMX19_02872 0.52 -1.4
122,711 + MPMX19_02872 0.53 -0.7
122,864 + MPMX19_02872 0.71 +0.4
122,864 + MPMX19_02872 0.71 -0.3
122,864 + MPMX19_02872 0.71 -0.9
122,864 + MPMX19_02872 0.71 +0.7
122,864 + MPMX19_02872 0.71 +0.4
122,864 + MPMX19_02872 0.71 +0.1
122,864 + MPMX19_02872 0.71 +0.1
122,865 - MPMX19_02872 0.72 +0.4
122,865 - MPMX19_02872 0.72 -0.9
122,865 - MPMX19_02872 0.72 -0.3
122,865 - MPMX19_02872 0.72 +0.7
122,865 - MPMX19_02872 0.72 -0.1
122,865 - MPMX19_02872 0.72 +1.2
122,865 - MPMX19_02872 0.72 +0.4
122,882 + MPMX19_02872 0.74 +0.0
122,882 + MPMX19_02872 0.74 -0.9
122,882 + MPMX19_02872 0.74 +2.4
122,882 + MPMX19_02872 0.74 -0.2
122,882 + MPMX19_02872 0.74 -1.9
122,883 - MPMX19_02872 0.74 -1.1
122,883 - MPMX19_02872 0.74 +0.0
122,883 - MPMX19_02872 0.74 -0.2
122,883 - MPMX19_02872 0.74 -1.7
122,883 - MPMX19_02872 0.74 +0.0
122,883 - MPMX19_02872 0.74 +0.2
122,897 + MPMX19_02872 0.76 +0.4
122,897 + MPMX19_02872 0.76 -1.9
122,897 + MPMX19_02872 0.76 +0.0
122,898 - MPMX19_02872 0.76 +0.1
122,898 - MPMX19_02872 0.76 -0.3
122,898 - MPMX19_02872 0.76 +0.4
122,898 - MPMX19_02872 0.76 +1.7
122,898 - MPMX19_02872 0.76 +0.1
122,898 - MPMX19_02872 0.76 -0.6
122,898 - MPMX19_02872 0.76 +1.3
122,898 - MPMX19_02872 0.76 -1.1
122,952 - MPMX19_02872 0.82 +1.4
123,133 - -0.2
123,133 - -0.1
123,549 + MPMX19_02873 0.29 -2.4
123,549 + MPMX19_02873 0.29 -2.7
123,549 + MPMX19_02873 0.29 -0.8
123,549 + MPMX19_02873 0.29 +0.2
123,549 + MPMX19_02873 0.29 +0.1
123,549 + MPMX19_02873 0.29 -1.1
123,549 + MPMX19_02873 0.29 -0.3
123,550 - MPMX19_02873 0.29 -0.9
123,550 - MPMX19_02873 0.29 -1.1
123,550 - MPMX19_02873 0.29 -2.7
123,550 - MPMX19_02873 0.29 +1.4
123,550 - MPMX19_02873 0.29 -1.6
123,550 - MPMX19_02873 0.29 -2.3
123,562 - MPMX19_02873 0.30 +1.0
123,651 + MPMX19_02873 0.39 +0.1
123,652 - MPMX19_02873 0.39 +0.0
123,862 - MPMX19_02873 0.60 -0.3
123,963 + MPMX19_02873 0.70 -0.2
123,963 + MPMX19_02873 0.70 -2.1
123,963 + MPMX19_02873 0.70 -0.3
123,963 + MPMX19_02873 0.70 -0.3
123,963 + MPMX19_02873 0.70 +0.1
123,964 - MPMX19_02873 0.70 -1.0
123,964 - MPMX19_02873 0.70 -0.3
123,964 - MPMX19_02873 0.70 +0.4
123,964 - MPMX19_02873 0.70 -2.3

Or see this region's nucleotide sequence