Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02615

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02614 and MPMX19_02615 are separated by 30 nucleotidesMPMX19_02615 and MPMX19_02616 are separated by 295 nucleotides MPMX19_02614: MPMX19_02614 - hypothetical protein, at 2,729,338 to 2,731,164 _02614 MPMX19_02615: MPMX19_02615 - hypothetical protein, at 2,731,195 to 2,731,977 _02615 MPMX19_02616: MPMX19_02616 - Phosphoenolpyruvate carboxykinase [GTP], at 2,732,273 to 2,734,096 _02616 Position (kb) 2731 2732Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2730.283 kb on - strand, within MPMX19_02614at 2730.540 kb on + strand, within MPMX19_02614at 2730.540 kb on + strand, within MPMX19_02614at 2730.540 kb on + strand, within MPMX19_02614at 2730.540 kb on + strand, within MPMX19_02614at 2730.540 kb on + strand, within MPMX19_02614at 2730.540 kb on + strand, within MPMX19_02614at 2730.540 kb on + strand, within MPMX19_02614at 2730.541 kb on - strand, within MPMX19_02614at 2730.541 kb on - strand, within MPMX19_02614at 2730.541 kb on - strand, within MPMX19_02614at 2730.541 kb on - strand, within MPMX19_02614at 2730.541 kb on - strand, within MPMX19_02614at 2730.541 kb on - strand, within MPMX19_02614at 2730.541 kb on - strand, within MPMX19_02614at 2731.196 kb on + strandat 2731.196 kb on + strandat 2731.196 kb on + strandat 2731.280 kb on + strand, within MPMX19_02615at 2731.280 kb on + strand, within MPMX19_02615at 2731.280 kb on + strand, within MPMX19_02615at 2731.280 kb on + strand, within MPMX19_02615at 2731.280 kb on + strand, within MPMX19_02615at 2731.281 kb on - strand, within MPMX19_02615at 2731.281 kb on - strand, within MPMX19_02615at 2731.281 kb on - strand, within MPMX19_02615at 2731.281 kb on - strand, within MPMX19_02615at 2731.281 kb on - strand, within MPMX19_02615at 2731.281 kb on - strand, within MPMX19_02615at 2731.281 kb on - strand, within MPMX19_02615at 2731.337 kb on + strand, within MPMX19_02615at 2731.454 kb on + strand, within MPMX19_02615at 2731.454 kb on + strand, within MPMX19_02615at 2731.604 kb on + strand, within MPMX19_02615at 2731.604 kb on + strand, within MPMX19_02615at 2731.604 kb on + strand, within MPMX19_02615at 2731.604 kb on + strand, within MPMX19_02615at 2731.604 kb on + strand, within MPMX19_02615at 2731.604 kb on + strand, within MPMX19_02615at 2731.605 kb on - strand, within MPMX19_02615at 2731.605 kb on - strand, within MPMX19_02615at 2731.605 kb on - strand, within MPMX19_02615at 2731.605 kb on - strand, within MPMX19_02615at 2731.605 kb on - strand, within MPMX19_02615at 2731.605 kb on - strand, within MPMX19_02615at 2731.605 kb on - strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.715 kb on + strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2731.716 kb on - strand, within MPMX19_02615at 2732.020 kb on + strandat 2732.020 kb on + strandat 2732.020 kb on + strandat 2732.021 kb on - strandat 2732.021 kb on - strandat 2732.021 kb on - strandat 2732.021 kb on - strandat 2732.031 kb on - strandat 2732.031 kb on - strandat 2732.031 kb on - strandat 2732.095 kb on + strandat 2732.095 kb on + strandat 2732.095 kb on + strandat 2732.096 kb on - strandat 2732.096 kb on - strandat 2732.096 kb on - strandat 2732.223 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.229 kb on + strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.230 kb on - strandat 2732.247 kb on + strandat 2732.247 kb on + strandat 2732.248 kb on - strandat 2732.248 kb on - strandat 2732.248 kb on - strandat 2732.248 kb on - strandat 2732.248 kb on - strandat 2732.248 kb on - strandat 2732.484 kb on + strand, within MPMX19_02616at 2732.485 kb on - strand, within MPMX19_02616at 2732.485 kb on - strand, within MPMX19_02616at 2732.496 kb on + strand, within MPMX19_02616at 2732.496 kb on + strand, within MPMX19_02616at 2732.497 kb on - strand, within MPMX19_02616at 2732.634 kb on + strand, within MPMX19_02616at 2732.634 kb on + strand, within MPMX19_02616at 2732.634 kb on + strand, within MPMX19_02616at 2732.634 kb on + strand, within MPMX19_02616at 2732.634 kb on + strand, within MPMX19_02616at 2732.634 kb on + strand, within MPMX19_02616at 2732.634 kb on + strand, within MPMX19_02616at 2732.634 kb on + strand, within MPMX19_02616at 2732.634 kb on + strand, within MPMX19_02616at 2732.635 kb on - strand, within MPMX19_02616at 2732.635 kb on - strand, within MPMX19_02616at 2732.635 kb on - strand, within MPMX19_02616at 2732.635 kb on - strand, within MPMX19_02616at 2732.635 kb on - strand, within MPMX19_02616at 2732.635 kb on - strand, within MPMX19_02616at 2732.635 kb on - strand, within MPMX19_02616at 2732.635 kb on - strand, within MPMX19_02616at 2732.688 kb on + strand, within MPMX19_02616at 2732.688 kb on + strand, within MPMX19_02616at 2732.688 kb on + strand, within MPMX19_02616at 2732.703 kb on + strand, within MPMX19_02616at 2732.703 kb on + strand, within MPMX19_02616at 2732.703 kb on + strand, within MPMX19_02616at 2732.703 kb on + strand, within MPMX19_02616at 2732.703 kb on + strand, within MPMX19_02616at 2732.704 kb on - strand, within MPMX19_02616at 2732.704 kb on - strand, within MPMX19_02616at 2732.799 kb on + strand, within MPMX19_02616at 2732.799 kb on + strand, within MPMX19_02616at 2732.799 kb on + strand, within MPMX19_02616at 2732.799 kb on + strand, within MPMX19_02616at 2732.799 kb on + strand, within MPMX19_02616at 2732.800 kb on - strand, within MPMX19_02616at 2732.800 kb on - strand, within MPMX19_02616at 2732.800 kb on - strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.820 kb on + strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616at 2732.821 kb on - strand, within MPMX19_02616

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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2,730,283 - MPMX19_02614 0.52 +2.0
2,730,540 + MPMX19_02614 0.66 -0.1
2,730,540 + MPMX19_02614 0.66 -0.8
2,730,540 + MPMX19_02614 0.66 -0.4
2,730,540 + MPMX19_02614 0.66 +1.4
2,730,540 + MPMX19_02614 0.66 -0.6
2,730,540 + MPMX19_02614 0.66 -0.2
2,730,540 + MPMX19_02614 0.66 +1.7
2,730,541 - MPMX19_02614 0.66 -0.1
2,730,541 - MPMX19_02614 0.66 +0.3
2,730,541 - MPMX19_02614 0.66 +0.1
2,730,541 - MPMX19_02614 0.66 -0.6
2,730,541 - MPMX19_02614 0.66 +0.6
2,730,541 - MPMX19_02614 0.66 -1.6
2,730,541 - MPMX19_02614 0.66 +0.9
2,731,196 + +1.1
2,731,196 + -2.4
2,731,196 + -0.1
2,731,280 + MPMX19_02615 0.11 +2.0
2,731,280 + MPMX19_02615 0.11 +0.6
2,731,280 + MPMX19_02615 0.11 -1.6
2,731,280 + MPMX19_02615 0.11 +1.0
2,731,280 + MPMX19_02615 0.11 +0.2
2,731,281 - MPMX19_02615 0.11 +0.7
2,731,281 - MPMX19_02615 0.11 -0.1
2,731,281 - MPMX19_02615 0.11 -0.3
2,731,281 - MPMX19_02615 0.11 +2.0
2,731,281 - MPMX19_02615 0.11 -0.8
2,731,281 - MPMX19_02615 0.11 +0.5
2,731,281 - MPMX19_02615 0.11 +0.7
2,731,337 + MPMX19_02615 0.18 +0.4
2,731,454 + MPMX19_02615 0.33 -1.0
2,731,454 + MPMX19_02615 0.33 +1.7
2,731,604 + MPMX19_02615 0.52 -1.9
2,731,604 + MPMX19_02615 0.52 +0.2
2,731,604 + MPMX19_02615 0.52 -0.8
2,731,604 + MPMX19_02615 0.52 -1.0
2,731,604 + MPMX19_02615 0.52 -0.3
2,731,604 + MPMX19_02615 0.52 -0.3
2,731,605 - MPMX19_02615 0.52 -0.1
2,731,605 - MPMX19_02615 0.52 -2.6
2,731,605 - MPMX19_02615 0.52 +1.1
2,731,605 - MPMX19_02615 0.52 +1.4
2,731,605 - MPMX19_02615 0.52 -0.0
2,731,605 - MPMX19_02615 0.52 -0.1
2,731,605 - MPMX19_02615 0.52 +1.4
2,731,715 + MPMX19_02615 0.66 +1.6
2,731,715 + MPMX19_02615 0.66 +1.0
2,731,715 + MPMX19_02615 0.66 -1.9
2,731,715 + MPMX19_02615 0.66 +0.0
2,731,715 + MPMX19_02615 0.66 -0.0
2,731,715 + MPMX19_02615 0.66 +2.4
2,731,715 + MPMX19_02615 0.66 +0.8
2,731,715 + MPMX19_02615 0.66 +0.4
2,731,715 + MPMX19_02615 0.66 -0.9
2,731,715 + MPMX19_02615 0.66 +0.4
2,731,715 + MPMX19_02615 0.66 -0.3
2,731,716 - MPMX19_02615 0.67 -1.4
2,731,716 - MPMX19_02615 0.67 -0.9
2,731,716 - MPMX19_02615 0.67 +0.0
2,731,716 - MPMX19_02615 0.67 +0.6
2,731,716 - MPMX19_02615 0.67 -1.3
2,731,716 - MPMX19_02615 0.67 -0.7
2,731,716 - MPMX19_02615 0.67 +1.1
2,731,716 - MPMX19_02615 0.67 +0.0
2,731,716 - MPMX19_02615 0.67 +0.2
2,731,716 - MPMX19_02615 0.67 +1.2
2,731,716 - MPMX19_02615 0.67 -0.7
2,732,020 + -0.8
2,732,020 + -0.9
2,732,020 + +0.1
2,732,021 - +0.0
2,732,021 - +0.9
2,732,021 - -2.1
2,732,021 - -0.9
2,732,031 - -0.3
2,732,031 - +0.2
2,732,031 - -0.1
2,732,095 + -1.7
2,732,095 + +0.0
2,732,095 + -1.3
2,732,096 - +0.0
2,732,096 - -1.1
2,732,096 - -0.7
2,732,223 + -0.6
2,732,229 + -0.9
2,732,229 + -0.6
2,732,229 + -1.4
2,732,229 + -0.8
2,732,229 + +0.7
2,732,229 + -0.8
2,732,229 + -0.2
2,732,229 + -0.3
2,732,229 + +0.2
2,732,229 + +0.7
2,732,229 + -0.2
2,732,229 + -2.1
2,732,229 + +0.9
2,732,229 + -1.4
2,732,229 + -1.1
2,732,229 + +0.2
2,732,229 + -1.1
2,732,229 + +0.4
2,732,229 + -0.3
2,732,229 + -1.0
2,732,229 + -0.1
2,732,230 - -2.4
2,732,230 - -0.1
2,732,230 - +0.7
2,732,230 - +0.6
2,732,230 - +1.0
2,732,230 - -1.0
2,732,230 - -1.6
2,732,230 - -2.7
2,732,230 - -1.6
2,732,230 - -1.0
2,732,230 - -0.1
2,732,230 - -1.1
2,732,247 + -0.7
2,732,247 + -1.6
2,732,248 - -1.6
2,732,248 - +0.4
2,732,248 - +0.4
2,732,248 - -1.1
2,732,248 - +0.1
2,732,248 - -0.6
2,732,484 + MPMX19_02616 0.12 +0.0
2,732,485 - MPMX19_02616 0.12 +0.4
2,732,485 - MPMX19_02616 0.12 +0.0
2,732,496 + MPMX19_02616 0.12 -0.9
2,732,496 + MPMX19_02616 0.12 +0.6
2,732,497 - MPMX19_02616 0.12 -0.9
2,732,634 + MPMX19_02616 0.20 +0.6
2,732,634 + MPMX19_02616 0.20 -0.4
2,732,634 + MPMX19_02616 0.20 -2.7
2,732,634 + MPMX19_02616 0.20 -0.5
2,732,634 + MPMX19_02616 0.20 +1.0
2,732,634 + MPMX19_02616 0.20 +0.0
2,732,634 + MPMX19_02616 0.20 +1.1
2,732,634 + MPMX19_02616 0.20 -1.6
2,732,634 + MPMX19_02616 0.20 -0.7
2,732,635 - MPMX19_02616 0.20 +0.2
2,732,635 - MPMX19_02616 0.20 +0.2
2,732,635 - MPMX19_02616 0.20 -1.6
2,732,635 - MPMX19_02616 0.20 -0.1
2,732,635 - MPMX19_02616 0.20 -0.9
2,732,635 - MPMX19_02616 0.20 -2.9
2,732,635 - MPMX19_02616 0.20 -1.6
2,732,635 - MPMX19_02616 0.20 -1.6
2,732,688 + MPMX19_02616 0.23 -0.7
2,732,688 + MPMX19_02616 0.23 +0.4
2,732,688 + MPMX19_02616 0.23 +0.6
2,732,703 + MPMX19_02616 0.24 -0.9
2,732,703 + MPMX19_02616 0.24 -0.4
2,732,703 + MPMX19_02616 0.24 +0.0
2,732,703 + MPMX19_02616 0.24 -0.3
2,732,703 + MPMX19_02616 0.24 +0.8
2,732,704 - MPMX19_02616 0.24 -0.6
2,732,704 - MPMX19_02616 0.24 -0.0
2,732,799 + MPMX19_02616 0.29 -1.1
2,732,799 + MPMX19_02616 0.29 -0.7
2,732,799 + MPMX19_02616 0.29 -0.4
2,732,799 + MPMX19_02616 0.29 -2.0
2,732,799 + MPMX19_02616 0.29 +0.4
2,732,800 - MPMX19_02616 0.29 +0.2
2,732,800 - MPMX19_02616 0.29 -1.6
2,732,800 - MPMX19_02616 0.29 +0.1
2,732,820 + MPMX19_02616 0.30 +0.3
2,732,820 + MPMX19_02616 0.30 +1.4
2,732,820 + MPMX19_02616 0.30 +1.4
2,732,820 + MPMX19_02616 0.30 +0.4
2,732,820 + MPMX19_02616 0.30 -1.6
2,732,820 + MPMX19_02616 0.30 -1.1
2,732,820 + MPMX19_02616 0.30 +0.2
2,732,820 + MPMX19_02616 0.30 -1.4
2,732,820 + MPMX19_02616 0.30 +1.7
2,732,820 + MPMX19_02616 0.30 +0.3
2,732,820 + MPMX19_02616 0.30 +0.4
2,732,820 + MPMX19_02616 0.30 -0.6
2,732,821 - MPMX19_02616 0.30 +1.2
2,732,821 - MPMX19_02616 0.30 +1.1
2,732,821 - MPMX19_02616 0.30 +1.2
2,732,821 - MPMX19_02616 0.30 -0.1
2,732,821 - MPMX19_02616 0.30 -0.6
2,732,821 - MPMX19_02616 0.30 -2.6
2,732,821 - MPMX19_02616 0.30 +1.0
2,732,821 - MPMX19_02616 0.30 -0.6
2,732,821 - MPMX19_02616 0.30 +1.4
2,732,821 - MPMX19_02616 0.30 -0.5

Or see this region's nucleotide sequence