Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00762

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00761 and MPMX19_00762 are separated by 145 nucleotidesMPMX19_00762 and MPMX19_00763 are separated by 94 nucleotides MPMX19_00761: MPMX19_00761 - RNA polymerase sigma factor RpoD, at 777,063 to 779,096 _00761 MPMX19_00762: MPMX19_00762 - tRNA-Met, at 779,242 to 779,317 _00762 MPMX19_00763: MPMX19_00763 - hypothetical protein, at 779,412 to 781,043 _00763 Position (kb) 779 780Strain fitness (log2 ratio) -2 -1 0 1at 779.589 kb on + strand, within MPMX19_00763at 779.589 kb on + strand, within MPMX19_00763at 779.589 kb on + strand, within MPMX19_00763at 779.589 kb on + strand, within MPMX19_00763at 779.589 kb on + strand, within MPMX19_00763at 779.590 kb on - strand, within MPMX19_00763at 779.590 kb on - strand, within MPMX19_00763at 779.590 kb on - strand, within MPMX19_00763at 779.590 kb on - strand, within MPMX19_00763at 779.755 kb on - strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.157 kb on - strand, within MPMX19_00763at 780.157 kb on - strand, within MPMX19_00763at 780.157 kb on - strand, within MPMX19_00763at 780.157 kb on - strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.297 kb on + strand, within MPMX19_00763at 780.298 kb on - strand, within MPMX19_00763

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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779,589 + MPMX19_00763 0.11 -0.2
779,589 + MPMX19_00763 0.11 -0.6
779,589 + MPMX19_00763 0.11 -0.3
779,589 + MPMX19_00763 0.11 -0.4
779,589 + MPMX19_00763 0.11 -0.1
779,590 - MPMX19_00763 0.11 -0.5
779,590 - MPMX19_00763 0.11 +0.4
779,590 - MPMX19_00763 0.11 -0.0
779,590 - MPMX19_00763 0.11 -0.4
779,755 - MPMX19_00763 0.21 +0.4
780,156 + MPMX19_00763 0.46 -0.0
780,156 + MPMX19_00763 0.46 +0.8
780,156 + MPMX19_00763 0.46 +0.8
780,156 + MPMX19_00763 0.46 -0.1
780,156 + MPMX19_00763 0.46 -0.3
780,157 - MPMX19_00763 0.46 -0.0
780,157 - MPMX19_00763 0.46 -1.9
780,157 - MPMX19_00763 0.46 -0.9
780,157 - MPMX19_00763 0.46 +0.6
780,271 + MPMX19_00763 0.53 +0.1
780,271 + MPMX19_00763 0.53 -0.6
780,271 + MPMX19_00763 0.53 +0.4
780,271 + MPMX19_00763 0.53 -2.2
780,271 + MPMX19_00763 0.53 -0.2
780,271 + MPMX19_00763 0.53 -2.6
780,271 + MPMX19_00763 0.53 +0.4
780,271 + MPMX19_00763 0.53 +1.4
780,271 + MPMX19_00763 0.53 +0.9
780,271 + MPMX19_00763 0.53 +0.4
780,271 + MPMX19_00763 0.53 -0.2
780,271 + MPMX19_00763 0.53 -0.6
780,271 + MPMX19_00763 0.53 -0.6
780,272 - MPMX19_00763 0.53 +0.7
780,272 - MPMX19_00763 0.53 +0.9
780,272 - MPMX19_00763 0.53 -2.0
780,272 - MPMX19_00763 0.53 -2.0
780,272 - MPMX19_00763 0.53 +1.2
780,272 - MPMX19_00763 0.53 -2.4
780,272 - MPMX19_00763 0.53 +1.4
780,272 - MPMX19_00763 0.53 -0.7
780,297 + MPMX19_00763 0.54 +1.2
780,298 - MPMX19_00763 0.54 -1.2

Or see this region's nucleotide sequence