Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00296

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00294 and MPMX19_00295 overlap by 4 nucleotidesMPMX19_00295 and MPMX19_00296 are separated by 236 nucleotidesMPMX19_00296 and MPMX19_00297 are separated by 40 nucleotides MPMX19_00294: MPMX19_00294 - Adaptive-response sensory-kinase SasA, at 293,488 to 294,945 _00294 MPMX19_00295: MPMX19_00295 - Transcriptional regulatory protein QseB, at 294,942 to 295,655 _00295 MPMX19_00296: MPMX19_00296 - (S)-sulfolactate dehydrogenase, at 295,892 to 296,845 _00296 MPMX19_00297: MPMX19_00297 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 296,886 to 297,554 _00297 Position (kb) 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.003 kb on + strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.004 kb on - strandat 295.120 kb on + strand, within MPMX19_00295at 295.120 kb on + strand, within MPMX19_00295at 295.121 kb on - strand, within MPMX19_00295at 295.121 kb on - strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.363 kb on + strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.364 kb on - strand, within MPMX19_00295at 295.831 kb on + strandat 295.832 kb on - strandat 295.832 kb on - strandat 295.832 kb on - strandat 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.064 kb on + strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.065 kb on - strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.223 kb on + strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.224 kb on - strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.263 kb on + strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.264 kb on - strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.490 kb on + strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.491 kb on - strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.733 kb on + strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.734 kb on - strand, within MPMX19_00296at 296.754 kb on + strandat 296.754 kb on + strandat 296.754 kb on + strandat 296.754 kb on + strandat 296.754 kb on + strandat 296.754 kb on + strandat 296.754 kb on + strandat 296.754 kb on + strandat 296.754 kb on + strandat 296.754 kb on + strandat 296.754 kb on + strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.755 kb on - strandat 296.769 kb on + strandat 296.769 kb on + strandat 296.769 kb on + strandat 296.769 kb on + strandat 296.770 kb on - strandat 296.770 kb on - strandat 296.770 kb on - strandat 296.770 kb on - strandat 296.770 kb on - strandat 296.914 kb on + strandat 296.914 kb on + strandat 296.914 kb on + strandat 296.914 kb on + strandat 296.914 kb on + strandat 296.914 kb on + strandat 296.914 kb on + strandat 296.915 kb on - strandat 296.915 kb on - strandat 296.915 kb on - strandat 296.971 kb on + strand, within MPMX19_00297at 296.972 kb on - strand, within MPMX19_00297at 297.353 kb on + strand, within MPMX19_00297at 297.354 kb on - strand, within MPMX19_00297at 297.626 kb on - strandat 297.760 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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295,003 + +1.8
295,003 + -0.1
295,003 + -0.4
295,003 + -0.9
295,003 + -0.2
295,003 + +0.3
295,003 + +0.6
295,003 + -0.6
295,003 + +0.2
295,003 + -0.2
295,003 + +0.1
295,004 - -1.2
295,004 - -0.4
295,004 - -1.2
295,004 - -0.2
295,004 - -0.3
295,004 - -1.1
295,120 + MPMX19_00295 0.25 +0.1
295,120 + MPMX19_00295 0.25 +0.8
295,121 - MPMX19_00295 0.25 -0.2
295,121 - MPMX19_00295 0.25 -1.2
295,363 + MPMX19_00295 0.59 -1.2
295,363 + MPMX19_00295 0.59 +0.2
295,363 + MPMX19_00295 0.59 -1.8
295,363 + MPMX19_00295 0.59 +0.1
295,363 + MPMX19_00295 0.59 -0.0
295,363 + MPMX19_00295 0.59 -0.3
295,363 + MPMX19_00295 0.59 -0.6
295,363 + MPMX19_00295 0.59 -0.2
295,363 + MPMX19_00295 0.59 +1.2
295,363 + MPMX19_00295 0.59 -0.9
295,363 + MPMX19_00295 0.59 -1.6
295,364 - MPMX19_00295 0.59 +0.1
295,364 - MPMX19_00295 0.59 -0.9
295,364 - MPMX19_00295 0.59 -0.6
295,364 - MPMX19_00295 0.59 +0.5
295,364 - MPMX19_00295 0.59 +0.1
295,364 - MPMX19_00295 0.59 +2.0
295,831 + +0.1
295,832 - -1.2
295,832 - +0.0
295,832 - -0.9
296,064 + MPMX19_00296 0.18 -1.0
296,064 + MPMX19_00296 0.18 -2.2
296,064 + MPMX19_00296 0.18 -0.0
296,064 + MPMX19_00296 0.18 -1.9
296,064 + MPMX19_00296 0.18 +0.6
296,064 + MPMX19_00296 0.18 +0.7
296,064 + MPMX19_00296 0.18 -1.0
296,064 + MPMX19_00296 0.18 +0.2
296,064 + MPMX19_00296 0.18 +0.4
296,064 + MPMX19_00296 0.18 -1.2
296,064 + MPMX19_00296 0.18 -0.0
296,065 - MPMX19_00296 0.18 +0.8
296,065 - MPMX19_00296 0.18 -1.6
296,065 - MPMX19_00296 0.18 -0.0
296,065 - MPMX19_00296 0.18 -1.2
296,065 - MPMX19_00296 0.18 +0.6
296,065 - MPMX19_00296 0.18 +0.4
296,065 - MPMX19_00296 0.18 -0.3
296,065 - MPMX19_00296 0.18 +1.1
296,065 - MPMX19_00296 0.18 -0.3
296,065 - MPMX19_00296 0.18 -0.3
296,065 - MPMX19_00296 0.18 -1.2
296,065 - MPMX19_00296 0.18 -0.0
296,223 + MPMX19_00296 0.35 +0.6
296,223 + MPMX19_00296 0.35 -0.4
296,223 + MPMX19_00296 0.35 +0.4
296,223 + MPMX19_00296 0.35 +2.2
296,223 + MPMX19_00296 0.35 +0.4
296,224 - MPMX19_00296 0.35 -0.2
296,224 - MPMX19_00296 0.35 -0.2
296,224 - MPMX19_00296 0.35 -1.6
296,224 - MPMX19_00296 0.35 -0.7
296,224 - MPMX19_00296 0.35 -1.6
296,263 + MPMX19_00296 0.39 +0.6
296,263 + MPMX19_00296 0.39 +2.7
296,263 + MPMX19_00296 0.39 -0.7
296,263 + MPMX19_00296 0.39 -1.6
296,263 + MPMX19_00296 0.39 +1.2
296,263 + MPMX19_00296 0.39 +0.5
296,263 + MPMX19_00296 0.39 +1.0
296,264 - MPMX19_00296 0.39 -0.9
296,264 - MPMX19_00296 0.39 -0.3
296,264 - MPMX19_00296 0.39 -0.4
296,264 - MPMX19_00296 0.39 +0.5
296,264 - MPMX19_00296 0.39 -3.3
296,264 - MPMX19_00296 0.39 -1.2
296,264 - MPMX19_00296 0.39 -0.4
296,264 - MPMX19_00296 0.39 -0.3
296,264 - MPMX19_00296 0.39 +0.4
296,264 - MPMX19_00296 0.39 -0.2
296,490 + MPMX19_00296 0.63 +0.7
296,490 + MPMX19_00296 0.63 -0.5
296,490 + MPMX19_00296 0.63 -0.7
296,490 + MPMX19_00296 0.63 -1.2
296,490 + MPMX19_00296 0.63 +0.4
296,490 + MPMX19_00296 0.63 +1.0
296,490 + MPMX19_00296 0.63 +2.4
296,490 + MPMX19_00296 0.63 -1.0
296,490 + MPMX19_00296 0.63 -1.1
296,490 + MPMX19_00296 0.63 -0.5
296,490 + MPMX19_00296 0.63 -1.6
296,490 + MPMX19_00296 0.63 -1.9
296,490 + MPMX19_00296 0.63 -0.6
296,490 + MPMX19_00296 0.63 -0.6
296,490 + MPMX19_00296 0.63 +0.4
296,491 - MPMX19_00296 0.63 +0.4
296,491 - MPMX19_00296 0.63 +1.4
296,491 - MPMX19_00296 0.63 -0.0
296,491 - MPMX19_00296 0.63 -0.8
296,491 - MPMX19_00296 0.63 -0.9
296,491 - MPMX19_00296 0.63 +0.4
296,491 - MPMX19_00296 0.63 -0.8
296,491 - MPMX19_00296 0.63 +0.8
296,491 - MPMX19_00296 0.63 +1.2
296,491 - MPMX19_00296 0.63 +0.7
296,491 - MPMX19_00296 0.63 -1.4
296,491 - MPMX19_00296 0.63 +0.4
296,491 - MPMX19_00296 0.63 +0.2
296,491 - MPMX19_00296 0.63 -0.6
296,733 + MPMX19_00296 0.88 -0.3
296,733 + MPMX19_00296 0.88 +0.4
296,733 + MPMX19_00296 0.88 +0.4
296,733 + MPMX19_00296 0.88 +0.4
296,733 + MPMX19_00296 0.88 -0.2
296,733 + MPMX19_00296 0.88 -1.6
296,733 + MPMX19_00296 0.88 -0.3
296,733 + MPMX19_00296 0.88 +0.1
296,733 + MPMX19_00296 0.88 -0.2
296,733 + MPMX19_00296 0.88 +1.1
296,734 - MPMX19_00296 0.88 +1.4
296,734 - MPMX19_00296 0.88 +1.0
296,734 - MPMX19_00296 0.88 +0.8
296,734 - MPMX19_00296 0.88 -1.6
296,734 - MPMX19_00296 0.88 -0.0
296,734 - MPMX19_00296 0.88 -1.4
296,734 - MPMX19_00296 0.88 +0.4
296,734 - MPMX19_00296 0.88 -0.4
296,734 - MPMX19_00296 0.88 +1.6
296,734 - MPMX19_00296 0.88 -0.6
296,734 - MPMX19_00296 0.88 -2.2
296,734 - MPMX19_00296 0.88 +0.4
296,734 - MPMX19_00296 0.88 +0.4
296,734 - MPMX19_00296 0.88 +0.9
296,734 - MPMX19_00296 0.88 -0.6
296,734 - MPMX19_00296 0.88 +0.4
296,734 - MPMX19_00296 0.88 +0.1
296,754 + +0.8
296,754 + +0.4
296,754 + -1.4
296,754 + -1.6
296,754 + -0.1
296,754 + -0.2
296,754 + -1.4
296,754 + -1.2
296,754 + -0.3
296,754 + +0.5
296,754 + -1.2
296,755 - +0.7
296,755 - +0.4
296,755 - -0.9
296,755 - -1.9
296,755 - -0.2
296,755 - -0.1
296,755 - -0.4
296,755 - -0.9
296,755 - +0.4
296,755 - +0.8
296,755 - +0.4
296,755 - -0.4
296,755 - -1.1
296,755 - -0.7
296,755 - +0.4
296,769 + -2.2
296,769 + +0.4
296,769 + +0.4
296,769 + +0.4
296,770 - -0.8
296,770 - -1.3
296,770 - -1.2
296,770 - -0.4
296,770 - +0.1
296,914 + -2.9
296,914 + -0.9
296,914 + -0.6
296,914 + +0.6
296,914 + +0.4
296,914 + -0.6
296,914 + -0.0
296,915 - +0.4
296,915 - +1.1
296,915 - +2.3
296,971 + MPMX19_00297 0.13 -2.2
296,972 - MPMX19_00297 0.13 +0.6
297,353 + MPMX19_00297 0.70 +0.8
297,354 - MPMX19_00297 0.70 -0.4
297,626 - -0.0
297,760 - -0.5

Or see this region's nucleotide sequence