Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yecJ and azuC are separated by 114 nucleotides azuC and yecR are separated by 261 nucleotides yecR and ftnA are separated by 170 nucleotides ftnA and yecH are separated by 36 nucleotides yecH and tyrP are separated by 191 nucleotides
MCAODC_19345: yecJ - Uncharacterized protein YecJ, at 717,927 to 718,178
yecJ
MCAODC_19350: azuC - stress response protein AzuC, at 718,293 to 718,379
azuC
MCAODC_19355: yecR - Uncharacterized protein YecR, at 718,641 to 718,964
yecR
MCAODC_19360: ftnA - non-heme ferritin, at 719,135 to 719,632
ftnA
MCAODC_19365: yecH - Uncharacterized protein YecH, at 719,669 to 719,908
yecH
MCAODC_19370: tyrP - tyrosine transporter TyrP, at 720,100 to 721,311
tyrP
Position (kb) 719
720 Strain fitness (log2 ratio) -2
-1
0
1
2 at 718.211 kb on - strand at 718.212 kb on + strand at 718.305 kb on - strand, within azuC at 718.340 kb on - strand, within azuC at 718.340 kb on - strand, within azuC at 718.344 kb on - strand, within azuC at 718.353 kb on - strand, within azuC at 718.402 kb on - strand at 718.427 kb on + strand at 718.427 kb on + strand at 718.430 kb on - strand at 718.497 kb on - strand at 718.540 kb on - strand at 718.556 kb on - strand at 718.623 kb on + strand at 718.669 kb on + strand at 718.672 kb on + strand at 718.688 kb on + strand, within yecR at 718.688 kb on + strand, within yecR at 718.736 kb on + strand, within yecR at 718.741 kb on + strand, within yecR at 718.741 kb on + strand, within yecR at 718.791 kb on + strand, within yecR at 718.898 kb on - strand, within yecR at 718.908 kb on - strand, within yecR at 718.927 kb on - strand, within yecR at 718.972 kb on - strand at 719.061 kb on - strand at 719.112 kb on + strand at 719.131 kb on + strand at 719.190 kb on - strand, within ftnA at 719.204 kb on + strand, within ftnA at 719.231 kb on + strand, within ftnA at 719.231 kb on + strand, within ftnA at 719.232 kb on - strand, within ftnA at 719.236 kb on + strand, within ftnA at 719.421 kb on + strand, within ftnA at 719.501 kb on + strand, within ftnA at 719.551 kb on + strand, within ftnA at 719.556 kb on + strand, within ftnA at 719.557 kb on - strand, within ftnA at 719.557 kb on - strand, within ftnA at 719.589 kb on - strand at 719.723 kb on - strand, within yecH at 719.849 kb on - strand, within yecH at 719.900 kb on - strand at 720.074 kb on + strand at 720.075 kb on - strand at 720.075 kb on - strand at 720.204 kb on + strand at 720.257 kb on + strand, within tyrP at 720.271 kb on + strand, within tyrP at 720.368 kb on + strand, within tyrP at 720.368 kb on + strand, within tyrP at 720.373 kb on + strand, within tyrP at 720.373 kb on + strand, within tyrP at 720.391 kb on + strand, within tyrP at 720.391 kb on + strand, within tyrP at 720.391 kb on + strand, within tyrP at 720.391 kb on + strand, within tyrP at 720.391 kb on + strand, within tyrP at 720.444 kb on + strand, within tyrP at 720.444 kb on + strand, within tyrP at 720.584 kb on + strand, within tyrP at 720.600 kb on + strand, within tyrP at 720.620 kb on + strand, within tyrP
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 718,211 - +0.7 718,212 + +0.3 718,305 - azuC MCAODC_19350 0.14 -0.5 718,340 - azuC MCAODC_19350 0.54 -1.2 718,340 - azuC MCAODC_19350 0.54 +1.5 718,344 - azuC MCAODC_19350 0.59 -1.2 718,353 - azuC MCAODC_19350 0.69 -1.1 718,402 - -0.4 718,427 + +0.6 718,427 + -1.9 718,430 - +0.7 718,497 - +0.3 718,540 - -0.3 718,556 - -0.9 718,623 + +0.4 718,669 + +0.6 718,672 + +0.1 718,688 + yecR MCAODC_19355 0.15 +1.5 718,688 + yecR MCAODC_19355 0.15 -1.3 718,736 + yecR MCAODC_19355 0.29 -0.5 718,741 + yecR MCAODC_19355 0.31 +0.7 718,741 + yecR MCAODC_19355 0.31 +2.1 718,791 + yecR MCAODC_19355 0.46 +1.6 718,898 - yecR MCAODC_19355 0.79 +1.8 718,908 - yecR MCAODC_19355 0.82 -2.4 718,927 - yecR MCAODC_19355 0.88 +0.8 718,972 - +0.1 719,061 - -0.0 719,112 + -0.4 719,131 + -0.5 719,190 - ftnA MCAODC_19360 0.11 +0.8 719,204 + ftnA MCAODC_19360 0.14 -0.4 719,231 + ftnA MCAODC_19360 0.19 +0.9 719,231 + ftnA MCAODC_19360 0.19 +0.5 719,232 - ftnA MCAODC_19360 0.19 +1.6 719,236 + ftnA MCAODC_19360 0.20 +0.1 719,421 + ftnA MCAODC_19360 0.57 -0.7 719,501 + ftnA MCAODC_19360 0.73 +0.5 719,551 + ftnA MCAODC_19360 0.84 -0.2 719,556 + ftnA MCAODC_19360 0.85 +0.9 719,557 - ftnA MCAODC_19360 0.85 +0.1 719,557 - ftnA MCAODC_19360 0.85 -0.4 719,589 - -0.3 719,723 - yecH MCAODC_19365 0.23 +0.8 719,849 - yecH MCAODC_19365 0.75 +0.9 719,900 - -0.1 720,074 + -0.6 720,075 - -0.2 720,075 - -0.3 720,204 + -0.2 720,257 + tyrP MCAODC_19370 0.13 -0.5 720,271 + tyrP MCAODC_19370 0.14 +0.4 720,368 + tyrP MCAODC_19370 0.22 -0.6 720,368 + tyrP MCAODC_19370 0.22 -1.2 720,373 + tyrP MCAODC_19370 0.23 +0.6 720,373 + tyrP MCAODC_19370 0.23 +0.4 720,391 + tyrP MCAODC_19370 0.24 +0.3 720,391 + tyrP MCAODC_19370 0.24 +0.3 720,391 + tyrP MCAODC_19370 0.24 +0.5 720,391 + tyrP MCAODC_19370 0.24 +1.5 720,391 + tyrP MCAODC_19370 0.24 +1.0 720,444 + tyrP MCAODC_19370 0.28 -0.6 720,444 + tyrP MCAODC_19370 0.28 +1.1 720,584 + tyrP MCAODC_19370 0.40 +0.3 720,600 + tyrP MCAODC_19370 0.41 +1.3 720,620 + tyrP MCAODC_19370 0.43 +0.1
Or see this region's nucleotide sequence