Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cheA and motB are separated by 4 nucleotides motB and motA overlap by 4 nucleotides motA and flhC are separated by 126 nucleotides flhC and flhD are separated by 2 nucleotides
MCAODC_19285: cheA - chemotaxis protein CheA, at 704,555 to 706,519
cheA
MCAODC_19290: motB - flagellar motor protein MotB, at 706,524 to 707,450
motB
MCAODC_19295: motA - flagellar motor stator protein MotA, at 707,447 to 708,334
motA
MCAODC_19300: flhC - flagellar transcriptional regulator FlhC, at 708,461 to 709,039
flhC
MCAODC_19305: flhD - flagellar transcriptional regulator FlhD, at 709,042 to 709,392
flhD
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 706.506 kb on - strand at 706.507 kb on + strand at 706.507 kb on + strand at 706.507 kb on + strand at 706.508 kb on - strand at 706.660 kb on - strand, within motB at 706.711 kb on - strand, within motB at 706.883 kb on + strand, within motB at 706.937 kb on + strand, within motB at 706.939 kb on + strand, within motB at 706.939 kb on + strand, within motB at 706.940 kb on - strand, within motB at 706.940 kb on - strand, within motB at 706.968 kb on - strand, within motB at 706.968 kb on - strand, within motB at 707.046 kb on + strand, within motB at 707.183 kb on - strand, within motB at 707.352 kb on - strand, within motB at 707.363 kb on - strand at 707.594 kb on - strand, within motA at 707.654 kb on + strand, within motA at 707.677 kb on + strand, within motA at 707.678 kb on - strand, within motA at 707.807 kb on - strand, within motA at 708.109 kb on + strand, within motA at 708.111 kb on + strand, within motA at 708.111 kb on + strand, within motA at 708.112 kb on - strand, within motA at 708.112 kb on - strand, within motA at 708.227 kb on - strand, within motA at 708.249 kb on + strand at 708.249 kb on + strand at 708.320 kb on + strand at 708.321 kb on - strand at 708.321 kb on - strand at 708.321 kb on - strand at 708.321 kb on - strand at 708.323 kb on + strand at 708.323 kb on + strand at 708.323 kb on + strand at 708.324 kb on - strand at 708.329 kb on - strand at 708.329 kb on - strand at 708.419 kb on - strand at 708.474 kb on - strand at 708.474 kb on - strand at 708.474 kb on - strand at 708.474 kb on - strand at 708.529 kb on + strand, within flhC at 708.564 kb on - strand, within flhC at 708.564 kb on - strand, within flhC at 708.564 kb on - strand, within flhC at 708.608 kb on - strand, within flhC at 708.648 kb on - strand, within flhC at 708.736 kb on - strand, within flhC at 708.738 kb on - strand, within flhC at 708.738 kb on - strand, within flhC at 708.773 kb on - strand, within flhC at 708.848 kb on - strand, within flhC at 708.936 kb on - strand, within flhC at 708.936 kb on - strand, within flhC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 706,506 - -2.3 706,507 + +0.5 706,507 + +0.5 706,507 + -0.4 706,508 - -0.6 706,660 - motB MCAODC_19290 0.15 +0.1 706,711 - motB MCAODC_19290 0.20 +0.5 706,883 + motB MCAODC_19290 0.39 +0.0 706,937 + motB MCAODC_19290 0.45 +0.2 706,939 + motB MCAODC_19290 0.45 +0.1 706,939 + motB MCAODC_19290 0.45 +0.1 706,940 - motB MCAODC_19290 0.45 -1.0 706,940 - motB MCAODC_19290 0.45 +0.4 706,968 - motB MCAODC_19290 0.48 -0.9 706,968 - motB MCAODC_19290 0.48 -0.6 707,046 + motB MCAODC_19290 0.56 -2.2 707,183 - motB MCAODC_19290 0.71 -0.5 707,352 - motB MCAODC_19290 0.89 +0.5 707,363 - -0.5 707,594 - motA MCAODC_19295 0.17 +0.8 707,654 + motA MCAODC_19295 0.23 +1.1 707,677 + motA MCAODC_19295 0.26 -0.5 707,678 - motA MCAODC_19295 0.26 -0.2 707,807 - motA MCAODC_19295 0.41 -1.2 708,109 + motA MCAODC_19295 0.75 +0.0 708,111 + motA MCAODC_19295 0.75 -0.6 708,111 + motA MCAODC_19295 0.75 +3.3 708,112 - motA MCAODC_19295 0.75 +0.2 708,112 - motA MCAODC_19295 0.75 -1.5 708,227 - motA MCAODC_19295 0.88 -0.7 708,249 + +0.1 708,249 + -1.1 708,320 + -1.6 708,321 - -0.0 708,321 - +0.0 708,321 - -1.2 708,321 - -0.7 708,323 + +0.5 708,323 + -0.2 708,323 + -0.5 708,324 - -0.2 708,329 - +0.7 708,329 - +1.7 708,419 - +0.4 708,474 - -1.3 708,474 - +0.4 708,474 - +0.6 708,474 - -0.7 708,529 + flhC MCAODC_19300 0.12 +1.7 708,564 - flhC MCAODC_19300 0.18 +0.1 708,564 - flhC MCAODC_19300 0.18 +0.8 708,564 - flhC MCAODC_19300 0.18 +0.8 708,608 - flhC MCAODC_19300 0.25 +0.0 708,648 - flhC MCAODC_19300 0.32 -0.7 708,736 - flhC MCAODC_19300 0.47 -0.6 708,738 - flhC MCAODC_19300 0.48 +0.6 708,738 - flhC MCAODC_19300 0.48 -0.1 708,773 - flhC MCAODC_19300 0.54 +0.4 708,848 - flhC MCAODC_19300 0.67 +1.1 708,936 - flhC MCAODC_19300 0.82 +0.4 708,936 - flhC MCAODC_19300 0.82 -0.4
Or see this region's nucleotide sequence