Strain Fitness in Escherichia coli ECRC101 around MCAODC_17875

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsxD and rsxG are separated by 3 nucleotidesrsxG and rsxE are separated by 3 nucleotidesrsxE and nth overlap by 1 nucleotides MCAODC_17870: rsxD - electron transport complex subunit RsxD, at 438,138 to 439,196 rsxD MCAODC_17875: rsxG - electron transport complex subunit RsxG, at 439,200 to 439,820 rsxG MCAODC_17880: rsxE - electron transport complex subunit RsxE, at 439,824 to 440,519 rsxE MCAODC_17885: nth - endonuclease III, at 440,519 to 441,154 nth Position (kb) 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 438.328 kb on + strand, within rsxDat 438.329 kb on - strand, within rsxDat 438.362 kb on + strand, within rsxDat 438.362 kb on + strand, within rsxDat 438.362 kb on + strand, within rsxDat 438.397 kb on + strand, within rsxDat 438.402 kb on - strand, within rsxDat 438.402 kb on - strand, within rsxDat 438.474 kb on + strand, within rsxDat 438.613 kb on + strand, within rsxDat 438.653 kb on + strand, within rsxDat 438.664 kb on + strand, within rsxDat 438.707 kb on + strand, within rsxDat 438.752 kb on + strand, within rsxDat 438.806 kb on - strand, within rsxDat 438.841 kb on + strand, within rsxDat 438.841 kb on + strand, within rsxDat 438.842 kb on - strand, within rsxDat 438.883 kb on + strand, within rsxDat 438.886 kb on + strand, within rsxDat 439.066 kb on + strand, within rsxDat 439.066 kb on + strand, within rsxDat 439.066 kb on + strand, within rsxDat 439.158 kb on + strandat 439.229 kb on + strandat 439.241 kb on - strandat 439.265 kb on - strand, within rsxGat 439.333 kb on + strand, within rsxGat 439.362 kb on + strand, within rsxGat 439.389 kb on + strand, within rsxGat 439.743 kb on - strand, within rsxGat 439.818 kb on + strandat 439.959 kb on - strand, within rsxEat 440.037 kb on + strand, within rsxEat 440.317 kb on + strand, within rsxEat 440.317 kb on + strand, within rsxEat 440.317 kb on + strand, within rsxEat 440.335 kb on + strand, within rsxEat 440.625 kb on + strand, within nthat 440.659 kb on + strand, within nthat 440.765 kb on - strand, within nthat 440.782 kb on + strand, within nth

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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438,328 + rsxD MCAODC_17870 0.18 +1.0
438,329 - rsxD MCAODC_17870 0.18 -1.3
438,362 + rsxD MCAODC_17870 0.21 +0.2
438,362 + rsxD MCAODC_17870 0.21 +0.1
438,362 + rsxD MCAODC_17870 0.21 +1.4
438,397 + rsxD MCAODC_17870 0.24 -0.2
438,402 - rsxD MCAODC_17870 0.25 +0.4
438,402 - rsxD MCAODC_17870 0.25 -1.2
438,474 + rsxD MCAODC_17870 0.32 -0.4
438,613 + rsxD MCAODC_17870 0.45 +0.1
438,653 + rsxD MCAODC_17870 0.49 -1.1
438,664 + rsxD MCAODC_17870 0.50 +0.8
438,707 + rsxD MCAODC_17870 0.54 -0.6
438,752 + rsxD MCAODC_17870 0.58 +1.2
438,806 - rsxD MCAODC_17870 0.63 -1.0
438,841 + rsxD MCAODC_17870 0.66 +0.8
438,841 + rsxD MCAODC_17870 0.66 +0.5
438,842 - rsxD MCAODC_17870 0.66 -0.8
438,883 + rsxD MCAODC_17870 0.70 -0.0
438,886 + rsxD MCAODC_17870 0.71 +0.1
439,066 + rsxD MCAODC_17870 0.88 -1.9
439,066 + rsxD MCAODC_17870 0.88 -1.8
439,066 + rsxD MCAODC_17870 0.88 -0.9
439,158 + +0.4
439,229 + +0.6
439,241 - +0.0
439,265 - rsxG MCAODC_17875 0.10 -0.8
439,333 + rsxG MCAODC_17875 0.21 -1.7
439,362 + rsxG MCAODC_17875 0.26 +1.9
439,389 + rsxG MCAODC_17875 0.30 -2.8
439,743 - rsxG MCAODC_17875 0.87 -2.0
439,818 + -1.3
439,959 - rsxE MCAODC_17880 0.19 +1.3
440,037 + rsxE MCAODC_17880 0.31 -0.2
440,317 + rsxE MCAODC_17880 0.71 -2.3
440,317 + rsxE MCAODC_17880 0.71 -0.9
440,317 + rsxE MCAODC_17880 0.71 +0.1
440,335 + rsxE MCAODC_17880 0.73 +0.5
440,625 + nth MCAODC_17885 0.17 -2.6
440,659 + nth MCAODC_17885 0.22 -1.1
440,765 - nth MCAODC_17885 0.39 +0.0
440,782 + nth MCAODC_17885 0.41 -1.8

Or see this region's nucleotide sequence