Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt add and ydgJ are separated by 35 nucleotides ydgJ and blr are separated by 242 nucleotides blr and ydgT are separated by 272 nucleotides ydgT and ydgK are separated by 85 nucleotides
MCAODC_17830: add - adenosine deaminase, at 431,131 to 432,132
add
MCAODC_17835: ydgJ - Uncharacterized oxidoreductase YdgJ, at 432,168 to 433,208
ydgJ
MCAODC_17840: blr - division septum protein Blr, at 433,451 to 433,576
blr
MCAODC_17845: ydgT - transcription modulator YdgT, at 433,849 to 434,064
ydgT
MCAODC_17850: ydgK - Inner membrane protein YdgK, at 434,150 to 434,590
ydgK
Position (kb) 432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 431.223 kb on + strand at 431.226 kb on + strand at 431.438 kb on - strand, within add at 431.877 kb on + strand, within add at 431.955 kb on + strand, within add at 432.003 kb on + strand, within add at 432.004 kb on - strand, within add at 432.004 kb on - strand, within add at 432.060 kb on + strand at 432.280 kb on - strand, within ydgJ at 432.302 kb on - strand, within ydgJ at 432.372 kb on - strand, within ydgJ at 432.395 kb on - strand, within ydgJ at 432.470 kb on - strand, within ydgJ at 432.470 kb on - strand, within ydgJ at 432.495 kb on - strand, within ydgJ at 432.495 kb on - strand, within ydgJ at 432.495 kb on - strand, within ydgJ at 432.497 kb on - strand, within ydgJ at 432.497 kb on - strand, within ydgJ at 432.497 kb on - strand, within ydgJ at 432.528 kb on - strand, within ydgJ at 432.651 kb on - strand, within ydgJ at 432.651 kb on - strand, within ydgJ at 432.651 kb on - strand, within ydgJ at 432.651 kb on - strand, within ydgJ at 432.770 kb on - strand, within ydgJ at 432.770 kb on - strand, within ydgJ at 432.926 kb on + strand, within ydgJ at 432.927 kb on - strand, within ydgJ at 433.015 kb on - strand, within ydgJ at 433.081 kb on - strand, within ydgJ at 433.230 kb on - strand at 433.230 kb on - strand at 433.230 kb on - strand at 433.239 kb on - strand at 433.249 kb on - strand at 433.309 kb on + strand at 433.310 kb on - strand at 433.387 kb on - strand at 433.395 kb on + strand at 433.395 kb on + strand at 433.449 kb on + strand at 433.449 kb on + strand at 433.449 kb on + strand at 433.449 kb on + strand at 433.558 kb on + strand, within blr at 433.559 kb on - strand, within blr at 433.654 kb on + strand at 433.763 kb on - strand at 433.804 kb on + strand at 433.828 kb on + strand at 433.832 kb on + strand at 433.864 kb on + strand at 433.868 kb on + strand at 433.915 kb on + strand, within ydgT at 433.926 kb on + strand, within ydgT at 433.926 kb on + strand, within ydgT at 433.927 kb on - strand, within ydgT at 433.962 kb on + strand, within ydgT at 433.963 kb on - strand, within ydgT at 433.966 kb on + strand, within ydgT at 433.966 kb on + strand, within ydgT at 434.054 kb on - strand at 434.083 kb on - strand at 434.094 kb on - strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.095 kb on + strand at 434.096 kb on - strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.149 kb on + strand at 434.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 431,223 + +0.3 431,226 + -0.8 431,438 - add MCAODC_17830 0.31 +0.0 431,877 + add MCAODC_17830 0.74 +3.1 431,955 + add MCAODC_17830 0.82 -1.5 432,003 + add MCAODC_17830 0.87 -3.0 432,004 - add MCAODC_17830 0.87 +0.3 432,004 - add MCAODC_17830 0.87 +0.8 432,060 + -0.9 432,280 - ydgJ MCAODC_17835 0.11 +1.1 432,302 - ydgJ MCAODC_17835 0.13 +0.2 432,372 - ydgJ MCAODC_17835 0.20 -0.5 432,395 - ydgJ MCAODC_17835 0.22 +0.1 432,470 - ydgJ MCAODC_17835 0.29 -0.3 432,470 - ydgJ MCAODC_17835 0.29 +0.6 432,495 - ydgJ MCAODC_17835 0.31 +0.3 432,495 - ydgJ MCAODC_17835 0.31 +1.6 432,495 - ydgJ MCAODC_17835 0.31 +0.1 432,497 - ydgJ MCAODC_17835 0.32 +0.9 432,497 - ydgJ MCAODC_17835 0.32 +0.1 432,497 - ydgJ MCAODC_17835 0.32 -0.4 432,528 - ydgJ MCAODC_17835 0.35 -0.1 432,651 - ydgJ MCAODC_17835 0.46 -0.1 432,651 - ydgJ MCAODC_17835 0.46 +0.1 432,651 - ydgJ MCAODC_17835 0.46 +0.8 432,651 - ydgJ MCAODC_17835 0.46 -0.8 432,770 - ydgJ MCAODC_17835 0.58 +2.7 432,770 - ydgJ MCAODC_17835 0.58 +1.1 432,926 + ydgJ MCAODC_17835 0.73 +0.6 432,927 - ydgJ MCAODC_17835 0.73 -2.0 433,015 - ydgJ MCAODC_17835 0.81 +0.3 433,081 - ydgJ MCAODC_17835 0.88 -2.1 433,230 - +3.8 433,230 - +2.1 433,230 - -0.3 433,239 - -0.2 433,249 - -0.2 433,309 + -0.2 433,310 - -0.3 433,387 - +0.0 433,395 + -1.2 433,395 + +0.2 433,449 + +1.2 433,449 + +0.1 433,449 + +0.9 433,449 + -0.0 433,558 + blr MCAODC_17840 0.85 -2.6 433,559 - blr MCAODC_17840 0.86 -0.5 433,654 + +0.8 433,763 - +0.3 433,804 + -1.1 433,828 + +1.0 433,832 + -2.4 433,864 + -0.5 433,868 + -0.3 433,915 + ydgT MCAODC_17845 0.31 -1.6 433,926 + ydgT MCAODC_17845 0.36 +0.4 433,926 + ydgT MCAODC_17845 0.36 -1.1 433,927 - ydgT MCAODC_17845 0.36 -0.3 433,962 + ydgT MCAODC_17845 0.52 +0.3 433,963 - ydgT MCAODC_17845 0.53 +0.8 433,966 + ydgT MCAODC_17845 0.54 -1.6 433,966 + ydgT MCAODC_17845 0.54 -0.7 434,054 - +0.4 434,083 - -0.0 434,094 - +0.2 434,095 + -0.8 434,095 + -0.0 434,095 + -1.9 434,095 + +1.0 434,095 + +0.3 434,096 - +0.5 434,149 + -0.8 434,149 + +1.7 434,149 + +0.0 434,149 + -2.2 434,149 + +1.0 434,149 + -0.8 434,149 + -0.9 434,150 - +0.2
Or see this region's nucleotide sequence