Strain Fitness in Escherichia coli ECRC101 around MCAODC_11545

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_11535 and MCAODC_11540 overlap by 4 nucleotidesMCAODC_11540 and MCAODC_11545 overlap by 4 nucleotidesMCAODC_11545 and MCAODC_11550 are separated by 252 nucleotides MCAODC_11535: MCAODC_11535 - protein NinG, at 2,295,333 to 2,295,944 _11535 MCAODC_11540: MCAODC_11540 - Serine/threonine-protein phosphatase, at 2,295,941 to 2,296,606 _11540 MCAODC_11545: MCAODC_11545 - Antitermination protein Q, at 2,296,603 to 2,297,226 _11545 MCAODC_11550: MCAODC_11550 - Membrane protein, at 2,297,479 to 2,298,222 _11550 Position (kb) 2296 2297 2298Strain fitness (log2 ratio) -2 -1 0 1at 2296.713 kb on + strand, within MCAODC_11545at 2296.754 kb on + strand, within MCAODC_11545at 2296.800 kb on + strand, within MCAODC_11545at 2296.807 kb on + strand, within MCAODC_11545at 2296.807 kb on + strand, within MCAODC_11545at 2296.807 kb on + strand, within MCAODC_11545at 2296.808 kb on - strand, within MCAODC_11545at 2296.808 kb on - strand, within MCAODC_11545at 2296.808 kb on - strand, within MCAODC_11545at 2296.844 kb on - strand, within MCAODC_11545at 2296.872 kb on + strand, within MCAODC_11545at 2296.872 kb on + strand, within MCAODC_11545at 2296.873 kb on - strand, within MCAODC_11545at 2296.873 kb on - strand, within MCAODC_11545at 2296.873 kb on - strand, within MCAODC_11545at 2296.886 kb on + strand, within MCAODC_11545at 2296.922 kb on - strand, within MCAODC_11545at 2296.990 kb on - strand, within MCAODC_11545at 2296.990 kb on - strand, within MCAODC_11545at 2296.990 kb on - strand, within MCAODC_11545at 2296.992 kb on - strand, within MCAODC_11545at 2297.015 kb on + strand, within MCAODC_11545at 2297.015 kb on + strand, within MCAODC_11545at 2297.043 kb on + strand, within MCAODC_11545at 2297.116 kb on - strand, within MCAODC_11545at 2297.116 kb on - strand, within MCAODC_11545at 2297.142 kb on + strand, within MCAODC_11545at 2297.152 kb on + strand, within MCAODC_11545at 2297.253 kb on + strandat 2297.321 kb on + strandat 2297.344 kb on + strandat 2297.367 kb on - strandat 2297.380 kb on + strandat 2297.380 kb on + strandat 2297.380 kb on + strandat 2297.391 kb on + strandat 2297.391 kb on + strandat 2297.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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2,296,713 + MCAODC_11545 0.18 -1.1
2,296,754 + MCAODC_11545 0.24 -0.6
2,296,800 + MCAODC_11545 0.32 +0.7
2,296,807 + MCAODC_11545 0.33 -1.0
2,296,807 + MCAODC_11545 0.33 -0.4
2,296,807 + MCAODC_11545 0.33 -0.8
2,296,808 - MCAODC_11545 0.33 -0.4
2,296,808 - MCAODC_11545 0.33 -0.6
2,296,808 - MCAODC_11545 0.33 -0.1
2,296,844 - MCAODC_11545 0.39 +0.2
2,296,872 + MCAODC_11545 0.43 +0.2
2,296,872 + MCAODC_11545 0.43 +0.4
2,296,873 - MCAODC_11545 0.43 +0.9
2,296,873 - MCAODC_11545 0.43 +1.3
2,296,873 - MCAODC_11545 0.43 +1.2
2,296,886 + MCAODC_11545 0.45 -0.3
2,296,922 - MCAODC_11545 0.51 +0.3
2,296,990 - MCAODC_11545 0.62 +0.6
2,296,990 - MCAODC_11545 0.62 -0.3
2,296,990 - MCAODC_11545 0.62 -1.3
2,296,992 - MCAODC_11545 0.62 -1.0
2,297,015 + MCAODC_11545 0.66 +1.0
2,297,015 + MCAODC_11545 0.66 +0.9
2,297,043 + MCAODC_11545 0.71 -0.7
2,297,116 - MCAODC_11545 0.82 -0.4
2,297,116 - MCAODC_11545 0.82 -0.7
2,297,142 + MCAODC_11545 0.86 -0.1
2,297,152 + MCAODC_11545 0.88 -0.8
2,297,253 + -1.1
2,297,321 + +0.3
2,297,344 + -0.4
2,297,367 - +0.9
2,297,380 + +0.9
2,297,380 + -0.2
2,297,380 + -0.2
2,297,391 + -0.7
2,297,391 + -0.7
2,297,412 - -1.9

Or see this region's nucleotide sequence