Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_11535 and MCAODC_11540 overlap by 4 nucleotides MCAODC_11540 and MCAODC_11545 overlap by 4 nucleotides MCAODC_11545 and MCAODC_11550 are separated by 252 nucleotides
MCAODC_11535: MCAODC_11535 - protein NinG, at 2,295,333 to 2,295,944
_11535
MCAODC_11540: MCAODC_11540 - Serine/threonine-protein phosphatase, at 2,295,941 to 2,296,606
_11540
MCAODC_11545: MCAODC_11545 - Antitermination protein Q, at 2,296,603 to 2,297,226
_11545
MCAODC_11550: MCAODC_11550 - Membrane protein, at 2,297,479 to 2,298,222
_11550
Position (kb)
2296
2297
2298 Strain fitness (log2 ratio)
-2
-1
0
1 at 2296.713 kb on + strand, within MCAODC_11545 at 2296.754 kb on + strand, within MCAODC_11545 at 2296.800 kb on + strand, within MCAODC_11545 at 2296.807 kb on + strand, within MCAODC_11545 at 2296.807 kb on + strand, within MCAODC_11545 at 2296.807 kb on + strand, within MCAODC_11545 at 2296.808 kb on - strand, within MCAODC_11545 at 2296.808 kb on - strand, within MCAODC_11545 at 2296.808 kb on - strand, within MCAODC_11545 at 2296.844 kb on - strand, within MCAODC_11545 at 2296.872 kb on + strand, within MCAODC_11545 at 2296.872 kb on + strand, within MCAODC_11545 at 2296.873 kb on - strand, within MCAODC_11545 at 2296.873 kb on - strand, within MCAODC_11545 at 2296.873 kb on - strand, within MCAODC_11545 at 2296.886 kb on + strand, within MCAODC_11545 at 2296.922 kb on - strand, within MCAODC_11545 at 2296.990 kb on - strand, within MCAODC_11545 at 2296.990 kb on - strand, within MCAODC_11545 at 2296.990 kb on - strand, within MCAODC_11545 at 2296.992 kb on - strand, within MCAODC_11545 at 2297.015 kb on + strand, within MCAODC_11545 at 2297.015 kb on + strand, within MCAODC_11545 at 2297.043 kb on + strand, within MCAODC_11545 at 2297.116 kb on - strand, within MCAODC_11545 at 2297.116 kb on - strand, within MCAODC_11545 at 2297.142 kb on + strand, within MCAODC_11545 at 2297.152 kb on + strand, within MCAODC_11545 at 2297.253 kb on + strand at 2297.321 kb on + strand at 2297.344 kb on + strand at 2297.367 kb on - strand at 2297.380 kb on + strand at 2297.380 kb on + strand at 2297.380 kb on + strand at 2297.391 kb on + strand at 2297.391 kb on + strand at 2297.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 2,296,713 + MCAODC_11545 0.18 -1.1 2,296,754 + MCAODC_11545 0.24 -0.6 2,296,800 + MCAODC_11545 0.32 +0.7 2,296,807 + MCAODC_11545 0.33 -1.0 2,296,807 + MCAODC_11545 0.33 -0.4 2,296,807 + MCAODC_11545 0.33 -0.8 2,296,808 - MCAODC_11545 0.33 -0.4 2,296,808 - MCAODC_11545 0.33 -0.6 2,296,808 - MCAODC_11545 0.33 -0.1 2,296,844 - MCAODC_11545 0.39 +0.2 2,296,872 + MCAODC_11545 0.43 +0.2 2,296,872 + MCAODC_11545 0.43 +0.4 2,296,873 - MCAODC_11545 0.43 +0.9 2,296,873 - MCAODC_11545 0.43 +1.3 2,296,873 - MCAODC_11545 0.43 +1.2 2,296,886 + MCAODC_11545 0.45 -0.3 2,296,922 - MCAODC_11545 0.51 +0.3 2,296,990 - MCAODC_11545 0.62 +0.6 2,296,990 - MCAODC_11545 0.62 -0.3 2,296,990 - MCAODC_11545 0.62 -1.3 2,296,992 - MCAODC_11545 0.62 -1.0 2,297,015 + MCAODC_11545 0.66 +1.0 2,297,015 + MCAODC_11545 0.66 +0.9 2,297,043 + MCAODC_11545 0.71 -0.7 2,297,116 - MCAODC_11545 0.82 -0.4 2,297,116 - MCAODC_11545 0.82 -0.7 2,297,142 + MCAODC_11545 0.86 -0.1 2,297,152 + MCAODC_11545 0.88 -0.8 2,297,253 + -1.1 2,297,321 + +0.3 2,297,344 + -0.4 2,297,367 - +0.9 2,297,380 + +0.9 2,297,380 + -0.2 2,297,380 + -0.2 2,297,391 + -0.7 2,297,391 + -0.7 2,297,412 - -1.9
Or see this region's nucleotide sequence