Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhgF and greB are separated by 96 nucleotides greB and ompR_G63V are separated by 227 nucleotides ompR_G63V and envZ overlap by 4 nucleotides
MCAODC_07555: yhgF - Protein YhgF, at 1,534,295 to 1,536,616
yhgF
MCAODC_07560: greB - transcription elongation factor GreB, at 1,536,713 to 1,537,189
greB
MCAODC_07565: ompR_G63V - two-component system response regulator OmpR, at 1,537,417 to 1,538,136
_G63V
MCAODC_07570: envZ - two-component system sensor histidine kinase EnvZ, at 1,538,133 to 1,539,485
envZ
Position (kb) 1536
1537
1538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1535.859 kb on + strand, within yhgF at 1535.859 kb on + strand, within yhgF at 1535.859 kb on + strand, within yhgF at 1535.859 kb on + strand, within yhgF at 1535.915 kb on + strand, within yhgF at 1535.915 kb on + strand, within yhgF at 1535.915 kb on + strand, within yhgF at 1535.915 kb on + strand, within yhgF at 1535.915 kb on + strand, within yhgF at 1535.994 kb on + strand, within yhgF at 1536.041 kb on - strand, within yhgF at 1536.070 kb on - strand, within yhgF at 1536.070 kb on - strand, within yhgF at 1536.124 kb on + strand, within yhgF at 1536.124 kb on + strand, within yhgF at 1536.126 kb on + strand, within yhgF at 1536.127 kb on - strand, within yhgF at 1536.127 kb on - strand, within yhgF at 1536.127 kb on - strand, within yhgF at 1536.181 kb on + strand, within yhgF at 1536.181 kb on + strand, within yhgF at 1536.181 kb on + strand, within yhgF at 1536.181 kb on + strand, within yhgF at 1536.181 kb on + strand, within yhgF at 1536.181 kb on + strand, within yhgF at 1536.182 kb on - strand, within yhgF at 1536.182 kb on - strand, within yhgF at 1536.182 kb on - strand, within yhgF at 1536.182 kb on - strand, within yhgF at 1536.182 kb on - strand, within yhgF at 1536.182 kb on - strand, within yhgF at 1536.182 kb on - strand, within yhgF at 1536.184 kb on - strand, within yhgF at 1536.184 kb on - strand, within yhgF at 1536.184 kb on - strand, within yhgF at 1536.184 kb on - strand, within yhgF at 1536.184 kb on - strand, within yhgF at 1536.184 kb on - strand, within yhgF at 1536.184 kb on - strand, within yhgF at 1536.289 kb on + strand, within yhgF at 1536.307 kb on - strand, within yhgF at 1536.307 kb on - strand, within yhgF at 1536.432 kb on + strand at 1536.454 kb on + strand at 1536.455 kb on - strand at 1536.494 kb on - strand at 1536.509 kb on - strand at 1536.521 kb on - strand at 1536.521 kb on - strand at 1536.521 kb on - strand at 1536.589 kb on + strand at 1536.589 kb on + strand at 1536.654 kb on + strand at 1536.654 kb on + strand at 1536.654 kb on + strand at 1536.654 kb on + strand at 1536.655 kb on - strand at 1536.655 kb on - strand at 1536.655 kb on - strand at 1536.655 kb on - strand at 1536.658 kb on + strand at 1536.658 kb on + strand at 1536.658 kb on + strand at 1536.658 kb on + strand at 1536.658 kb on + strand at 1536.659 kb on - strand at 1536.659 kb on - strand at 1536.659 kb on - strand at 1536.702 kb on - strand at 1536.702 kb on - strand at 1536.739 kb on + strand at 1536.739 kb on + strand at 1536.740 kb on - strand at 1536.740 kb on - strand at 1536.740 kb on - strand at 1536.744 kb on + strand at 1536.745 kb on - strand at 1536.745 kb on - strand at 1536.745 kb on - strand at 1536.745 kb on - strand at 1536.745 kb on - strand at 1536.770 kb on - strand, within greB at 1536.840 kb on + strand, within greB at 1536.840 kb on + strand, within greB at 1536.840 kb on + strand, within greB at 1536.841 kb on - strand, within greB at 1536.841 kb on - strand, within greB at 1536.841 kb on - strand, within greB at 1536.841 kb on - strand, within greB at 1536.841 kb on - strand, within greB at 1536.878 kb on - strand, within greB at 1536.960 kb on + strand, within greB at 1536.961 kb on - strand, within greB at 1536.991 kb on + strand, within greB at 1536.991 kb on + strand, within greB at 1536.992 kb on - strand, within greB at 1536.999 kb on + strand, within greB at 1536.999 kb on + strand, within greB at 1537.000 kb on - strand, within greB at 1537.036 kb on + strand, within greB at 1537.036 kb on + strand, within greB at 1537.039 kb on + strand, within greB at 1537.039 kb on + strand, within greB at 1537.040 kb on - strand, within greB at 1537.041 kb on + strand, within greB at 1537.041 kb on + strand, within greB at 1537.041 kb on + strand, within greB at 1537.042 kb on - strand, within greB at 1537.042 kb on - strand, within greB at 1537.042 kb on - strand, within greB at 1537.048 kb on - strand, within greB at 1537.131 kb on + strand, within greB at 1537.132 kb on - strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.135 kb on + strand, within greB at 1537.136 kb on - strand, within greB at 1537.136 kb on - strand, within greB at 1537.159 kb on - strand at 1537.232 kb on + strand at 1537.233 kb on - strand at 1537.234 kb on + strand at 1537.235 kb on - strand at 1537.245 kb on + strand at 1537.246 kb on - strand at 1537.246 kb on - strand at 1537.246 kb on - strand at 1537.284 kb on + strand at 1537.284 kb on + strand at 1537.288 kb on + strand at 1537.289 kb on - strand at 1537.289 kb on - strand at 1537.289 kb on - strand at 1537.289 kb on - strand at 1537.300 kb on + strand at 1537.301 kb on - strand at 1537.343 kb on + strand at 1537.344 kb on - strand at 1537.375 kb on + strand at 1537.376 kb on - strand at 1537.376 kb on - strand at 1537.376 kb on - strand at 1537.383 kb on + strand at 1537.409 kb on + strand at 1537.410 kb on - strand at 1537.430 kb on - strand at 1537.483 kb on + strand at 1537.484 kb on - strand at 1537.570 kb on - strand, within ompR_G63V at 1537.570 kb on - strand, within ompR_G63V at 1537.570 kb on - strand, within ompR_G63V at 1537.583 kb on + strand, within ompR_G63V at 1537.583 kb on + strand, within ompR_G63V at 1537.583 kb on + strand, within ompR_G63V at 1537.583 kb on + strand, within ompR_G63V at 1537.589 kb on + strand, within ompR_G63V at 1537.589 kb on + strand, within ompR_G63V at 1537.590 kb on - strand, within ompR_G63V at 1537.590 kb on - strand, within ompR_G63V at 1537.656 kb on + strand, within ompR_G63V at 1537.657 kb on - strand, within ompR_G63V at 1537.657 kb on - strand, within ompR_G63V at 1537.738 kb on - strand, within ompR_G63V at 1537.796 kb on + strand, within ompR_G63V at 1537.826 kb on + strand, within ompR_G63V at 1537.965 kb on + strand, within ompR_G63V at 1538.104 kb on + strand at 1538.104 kb on + strand at 1538.128 kb on - strand at 1538.174 kb on + strand at 1538.174 kb on + strand at 1538.174 kb on + strand at 1538.174 kb on + strand at 1538.175 kb on - strand at 1538.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 1,535,859 + yhgF MCAODC_07555 0.67 -0.1 1,535,859 + yhgF MCAODC_07555 0.67 -0.2 1,535,859 + yhgF MCAODC_07555 0.67 -0.2 1,535,859 + yhgF MCAODC_07555 0.67 -0.8 1,535,915 + yhgF MCAODC_07555 0.70 -0.2 1,535,915 + yhgF MCAODC_07555 0.70 +0.0 1,535,915 + yhgF MCAODC_07555 0.70 -0.2 1,535,915 + yhgF MCAODC_07555 0.70 +0.7 1,535,915 + yhgF MCAODC_07555 0.70 +0.2 1,535,994 + yhgF MCAODC_07555 0.73 +0.8 1,536,041 - yhgF MCAODC_07555 0.75 -0.2 1,536,070 - yhgF MCAODC_07555 0.76 -0.3 1,536,070 - yhgF MCAODC_07555 0.76 +0.5 1,536,124 + yhgF MCAODC_07555 0.79 +0.9 1,536,124 + yhgF MCAODC_07555 0.79 +0.2 1,536,126 + yhgF MCAODC_07555 0.79 +0.1 1,536,127 - yhgF MCAODC_07555 0.79 +0.0 1,536,127 - yhgF MCAODC_07555 0.79 -1.1 1,536,127 - yhgF MCAODC_07555 0.79 +0.6 1,536,181 + yhgF MCAODC_07555 0.81 -0.3 1,536,181 + yhgF MCAODC_07555 0.81 -1.1 1,536,181 + yhgF MCAODC_07555 0.81 -0.2 1,536,181 + yhgF MCAODC_07555 0.81 -0.9 1,536,181 + yhgF MCAODC_07555 0.81 +1.3 1,536,181 + yhgF MCAODC_07555 0.81 +0.4 1,536,182 - yhgF MCAODC_07555 0.81 +0.4 1,536,182 - yhgF MCAODC_07555 0.81 +1.0 1,536,182 - yhgF MCAODC_07555 0.81 -1.5 1,536,182 - yhgF MCAODC_07555 0.81 +0.8 1,536,182 - yhgF MCAODC_07555 0.81 -1.2 1,536,182 - yhgF MCAODC_07555 0.81 +1.2 1,536,182 - yhgF MCAODC_07555 0.81 -0.2 1,536,184 - yhgF MCAODC_07555 0.81 +1.1 1,536,184 - yhgF MCAODC_07555 0.81 +0.5 1,536,184 - yhgF MCAODC_07555 0.81 -0.0 1,536,184 - yhgF MCAODC_07555 0.81 +0.2 1,536,184 - yhgF MCAODC_07555 0.81 +0.5 1,536,184 - yhgF MCAODC_07555 0.81 +0.4 1,536,184 - yhgF MCAODC_07555 0.81 +0.7 1,536,289 + yhgF MCAODC_07555 0.86 +1.2 1,536,307 - yhgF MCAODC_07555 0.87 -0.0 1,536,307 - yhgF MCAODC_07555 0.87 +0.1 1,536,432 + -0.1 1,536,454 + +0.1 1,536,455 - -0.2 1,536,494 - -1.5 1,536,509 - +0.6 1,536,521 - +1.8 1,536,521 - +0.3 1,536,521 - -0.1 1,536,589 + -0.8 1,536,589 + -0.0 1,536,654 + +0.8 1,536,654 + -0.0 1,536,654 + +0.6 1,536,654 + +0.2 1,536,655 - +0.4 1,536,655 - +0.0 1,536,655 - +0.1 1,536,655 - +0.3 1,536,658 + +0.2 1,536,658 + +1.2 1,536,658 + -0.4 1,536,658 + +0.8 1,536,658 + +0.6 1,536,659 - -0.3 1,536,659 - +0.1 1,536,659 - -2.0 1,536,702 - -0.0 1,536,702 - +1.3 1,536,739 + -1.9 1,536,739 + -0.9 1,536,740 - -0.3 1,536,740 - +0.7 1,536,740 - -0.7 1,536,744 + -0.0 1,536,745 - +0.5 1,536,745 - +0.7 1,536,745 - -0.3 1,536,745 - -0.9 1,536,745 - -0.8 1,536,770 - greB MCAODC_07560 0.12 -0.6 1,536,840 + greB MCAODC_07560 0.27 -0.2 1,536,840 + greB MCAODC_07560 0.27 -0.1 1,536,840 + greB MCAODC_07560 0.27 +0.2 1,536,841 - greB MCAODC_07560 0.27 +1.1 1,536,841 - greB MCAODC_07560 0.27 -0.7 1,536,841 - greB MCAODC_07560 0.27 -0.4 1,536,841 - greB MCAODC_07560 0.27 +1.0 1,536,841 - greB MCAODC_07560 0.27 +0.6 1,536,878 - greB MCAODC_07560 0.35 -0.5 1,536,960 + greB MCAODC_07560 0.52 -0.0 1,536,961 - greB MCAODC_07560 0.52 -0.5 1,536,991 + greB MCAODC_07560 0.58 +0.2 1,536,991 + greB MCAODC_07560 0.58 +0.3 1,536,992 - greB MCAODC_07560 0.58 +0.3 1,536,999 + greB MCAODC_07560 0.60 +1.0 1,536,999 + greB MCAODC_07560 0.60 -0.4 1,537,000 - greB MCAODC_07560 0.60 -0.3 1,537,036 + greB MCAODC_07560 0.68 -0.8 1,537,036 + greB MCAODC_07560 0.68 -0.0 1,537,039 + greB MCAODC_07560 0.68 +0.7 1,537,039 + greB MCAODC_07560 0.68 +0.7 1,537,040 - greB MCAODC_07560 0.69 -0.6 1,537,041 + greB MCAODC_07560 0.69 -0.2 1,537,041 + greB MCAODC_07560 0.69 +0.6 1,537,041 + greB MCAODC_07560 0.69 -0.9 1,537,042 - greB MCAODC_07560 0.69 +1.2 1,537,042 - greB MCAODC_07560 0.69 -0.7 1,537,042 - greB MCAODC_07560 0.69 +0.9 1,537,048 - greB MCAODC_07560 0.70 +0.2 1,537,131 + greB MCAODC_07560 0.88 -0.3 1,537,132 - greB MCAODC_07560 0.88 +0.4 1,537,135 + greB MCAODC_07560 0.88 -0.2 1,537,135 + greB MCAODC_07560 0.88 +0.6 1,537,135 + greB MCAODC_07560 0.88 -0.1 1,537,135 + greB MCAODC_07560 0.88 +0.0 1,537,135 + greB MCAODC_07560 0.88 -0.1 1,537,135 + greB MCAODC_07560 0.88 +0.9 1,537,135 + greB MCAODC_07560 0.88 +1.7 1,537,135 + greB MCAODC_07560 0.88 +0.6 1,537,136 - greB MCAODC_07560 0.89 -0.1 1,537,136 - greB MCAODC_07560 0.89 -2.0 1,537,159 - -0.3 1,537,232 + +1.2 1,537,233 - +1.3 1,537,234 + -0.1 1,537,235 - -0.5 1,537,245 + -0.8 1,537,246 - +0.7 1,537,246 - -0.3 1,537,246 - +2.3 1,537,284 + +1.8 1,537,284 + -0.4 1,537,288 + -0.7 1,537,289 - -0.1 1,537,289 - +0.3 1,537,289 - +1.0 1,537,289 - +0.2 1,537,300 + +0.5 1,537,301 - +0.2 1,537,343 + +0.0 1,537,344 - +1.0 1,537,375 + -1.2 1,537,376 - +1.9 1,537,376 - +1.1 1,537,376 - +0.9 1,537,383 + -0.1 1,537,409 + +0.9 1,537,410 - -0.2 1,537,430 - -1.9 1,537,483 + +0.3 1,537,484 - -0.8 1,537,570 - ompR_G63V MCAODC_07565 0.21 +1.8 1,537,570 - ompR_G63V MCAODC_07565 0.21 -1.7 1,537,570 - ompR_G63V MCAODC_07565 0.21 -2.4 1,537,583 + ompR_G63V MCAODC_07565 0.23 +2.0 1,537,583 + ompR_G63V MCAODC_07565 0.23 +0.4 1,537,583 + ompR_G63V MCAODC_07565 0.23 +0.7 1,537,583 + ompR_G63V MCAODC_07565 0.23 +0.9 1,537,589 + ompR_G63V MCAODC_07565 0.24 +0.3 1,537,589 + ompR_G63V MCAODC_07565 0.24 -1.0 1,537,590 - ompR_G63V MCAODC_07565 0.24 -1.8 1,537,590 - ompR_G63V MCAODC_07565 0.24 -0.7 1,537,656 + ompR_G63V MCAODC_07565 0.33 +0.5 1,537,657 - ompR_G63V MCAODC_07565 0.33 +0.2 1,537,657 - ompR_G63V MCAODC_07565 0.33 -0.5 1,537,738 - ompR_G63V MCAODC_07565 0.45 +1.0 1,537,796 + ompR_G63V MCAODC_07565 0.53 -1.7 1,537,826 + ompR_G63V MCAODC_07565 0.57 -1.1 1,537,965 + ompR_G63V MCAODC_07565 0.76 +2.0 1,538,104 + +0.1 1,538,104 + -1.2 1,538,128 - -1.9 1,538,174 + -0.7 1,538,174 + +0.1 1,538,174 + -0.5 1,538,174 + -0.2 1,538,175 - +0.5 1,538,175 - -0.7
Or see this region's nucleotide sequence