Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_05685 and uhpA_G97D are separated by 161 nucleotides uhpA_G97D and uhpB overlap by 1 nucleotides uhpB and uhpC are separated by 9 nucleotides
MCAODC_05685: MCAODC_05685 - hypothetical protein, at 1,147,048 to 1,148,151
_05685
MCAODC_05690: uhpA_G97D - DNA-binding response regulator UhpA, at 1,148,313 to 1,148,903
_G97D
MCAODC_05695: uhpB - signal transduction histidine-protein kinase/phosphatase UhpB, at 1,148,903 to 1,150,405
uhpB
MCAODC_05700: uhpC - MFS transporter family glucose-6-phosphate receptor UhpC, at 1,150,415 to 1,151,734
uhpC
Position (kb) 1148
1149
1150
1151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1147.976 kb on - strand, within MCAODC_05685 at 1148.039 kb on + strand, within MCAODC_05685 at 1148.040 kb on - strand, within MCAODC_05685 at 1148.058 kb on + strand at 1148.106 kb on - strand at 1148.150 kb on - strand at 1148.226 kb on + strand at 1148.226 kb on + strand at 1148.227 kb on - strand at 1148.227 kb on - strand at 1148.234 kb on + strand at 1148.235 kb on - strand at 1148.235 kb on - strand at 1148.238 kb on + strand at 1148.238 kb on + strand at 1148.239 kb on - strand at 1148.270 kb on + strand at 1148.281 kb on + strand at 1148.281 kb on + strand at 1148.332 kb on + strand at 1148.333 kb on - strand at 1148.333 kb on - strand at 1148.333 kb on - strand at 1148.398 kb on + strand, within uhpA_G97D at 1148.398 kb on + strand, within uhpA_G97D at 1148.398 kb on + strand, within uhpA_G97D at 1148.399 kb on - strand, within uhpA_G97D at 1148.399 kb on - strand, within uhpA_G97D at 1148.399 kb on - strand, within uhpA_G97D at 1148.465 kb on + strand, within uhpA_G97D at 1148.465 kb on + strand, within uhpA_G97D at 1148.466 kb on - strand, within uhpA_G97D at 1148.490 kb on - strand, within uhpA_G97D at 1148.510 kb on - strand, within uhpA_G97D at 1148.528 kb on + strand, within uhpA_G97D at 1148.528 kb on + strand, within uhpA_G97D at 1148.529 kb on - strand, within uhpA_G97D at 1148.529 kb on - strand, within uhpA_G97D at 1148.540 kb on + strand, within uhpA_G97D at 1148.540 kb on + strand, within uhpA_G97D at 1148.540 kb on + strand, within uhpA_G97D at 1148.540 kb on + strand, within uhpA_G97D at 1148.541 kb on - strand, within uhpA_G97D at 1148.541 kb on - strand, within uhpA_G97D at 1148.541 kb on - strand, within uhpA_G97D at 1148.541 kb on - strand, within uhpA_G97D at 1148.541 kb on - strand, within uhpA_G97D at 1148.541 kb on - strand, within uhpA_G97D at 1148.541 kb on - strand, within uhpA_G97D at 1148.621 kb on + strand, within uhpA_G97D at 1148.651 kb on + strand, within uhpA_G97D at 1148.652 kb on - strand, within uhpA_G97D at 1148.652 kb on - strand, within uhpA_G97D at 1148.652 kb on - strand, within uhpA_G97D at 1148.674 kb on - strand, within uhpA_G97D at 1148.818 kb on + strand, within uhpA_G97D at 1148.819 kb on - strand, within uhpA_G97D at 1148.819 kb on - strand, within uhpA_G97D at 1148.886 kb on - strand at 1148.925 kb on + strand at 1148.926 kb on - strand at 1148.926 kb on - strand at 1148.929 kb on + strand at 1148.935 kb on + strand at 1148.984 kb on - strand at 1148.984 kb on - strand at 1149.014 kb on - strand at 1149.014 kb on - strand at 1149.027 kb on + strand at 1149.054 kb on + strand, within uhpB at 1149.116 kb on + strand, within uhpB at 1149.157 kb on - strand, within uhpB at 1149.170 kb on - strand, within uhpB at 1149.174 kb on + strand, within uhpB at 1149.174 kb on + strand, within uhpB at 1149.175 kb on - strand, within uhpB at 1149.184 kb on - strand, within uhpB at 1149.244 kb on - strand, within uhpB at 1149.363 kb on + strand, within uhpB at 1149.363 kb on + strand, within uhpB at 1149.364 kb on - strand, within uhpB at 1149.383 kb on + strand, within uhpB at 1149.383 kb on + strand, within uhpB at 1149.383 kb on + strand, within uhpB at 1149.395 kb on - strand, within uhpB at 1149.395 kb on - strand, within uhpB at 1149.395 kb on - strand, within uhpB at 1149.468 kb on - strand, within uhpB at 1149.468 kb on - strand, within uhpB at 1149.468 kb on - strand, within uhpB at 1149.484 kb on + strand, within uhpB at 1149.533 kb on - strand, within uhpB at 1149.667 kb on - strand, within uhpB at 1149.705 kb on + strand, within uhpB at 1149.705 kb on + strand, within uhpB at 1149.705 kb on + strand, within uhpB at 1149.739 kb on + strand, within uhpB at 1149.739 kb on + strand, within uhpB at 1149.740 kb on - strand, within uhpB at 1149.875 kb on - strand, within uhpB at 1149.875 kb on - strand, within uhpB at 1149.965 kb on + strand, within uhpB at 1149.966 kb on - strand, within uhpB at 1150.026 kb on + strand, within uhpB at 1150.398 kb on - strand at 1150.398 kb on - strand at 1150.398 kb on - strand at 1150.490 kb on + strand at 1150.529 kb on + strand at 1150.541 kb on + strand at 1150.542 kb on - strand at 1150.552 kb on + strand, within uhpC at 1150.552 kb on + strand, within uhpC at 1150.637 kb on + strand, within uhpC at 1150.637 kb on + strand, within uhpC at 1150.637 kb on + strand, within uhpC at 1150.638 kb on - strand, within uhpC at 1150.638 kb on - strand, within uhpC at 1150.642 kb on + strand, within uhpC at 1150.643 kb on - strand, within uhpC at 1150.643 kb on - strand, within uhpC at 1150.643 kb on - strand, within uhpC at 1150.647 kb on - strand, within uhpC at 1150.700 kb on + strand, within uhpC at 1150.701 kb on - strand, within uhpC at 1150.705 kb on + strand, within uhpC at 1150.705 kb on + strand, within uhpC at 1150.713 kb on + strand, within uhpC at 1150.713 kb on + strand, within uhpC at 1150.853 kb on + strand, within uhpC at 1150.853 kb on + strand, within uhpC at 1150.903 kb on + strand, within uhpC at 1150.990 kb on + strand, within uhpC at 1150.991 kb on - strand, within uhpC at 1150.991 kb on - strand, within uhpC at 1150.991 kb on - strand, within uhpC at 1151.049 kb on + strand, within uhpC at 1151.147 kb on + strand, within uhpC at 1151.147 kb on + strand, within uhpC at 1151.147 kb on + strand, within uhpC at 1151.147 kb on + strand, within uhpC at 1151.147 kb on + strand, within uhpC at 1151.147 kb on + strand, within uhpC at 1151.148 kb on - strand, within uhpC at 1151.148 kb on - strand, within uhpC at 1151.148 kb on - strand, within uhpC at 1151.148 kb on - strand, within uhpC at 1151.148 kb on - strand, within uhpC at 1151.148 kb on - strand, within uhpC at 1151.148 kb on - strand, within uhpC at 1151.165 kb on + strand, within uhpC at 1151.165 kb on + strand, within uhpC at 1151.165 kb on + strand, within uhpC at 1151.166 kb on - strand, within uhpC at 1151.166 kb on - strand, within uhpC at 1151.166 kb on - strand, within uhpC at 1151.167 kb on + strand, within uhpC at 1151.167 kb on + strand, within uhpC at 1151.167 kb on + strand, within uhpC at 1151.168 kb on - strand, within uhpC at 1151.189 kb on + strand, within uhpC at 1151.189 kb on + strand, within uhpC at 1151.190 kb on - strand, within uhpC at 1151.190 kb on - strand, within uhpC at 1151.190 kb on - strand, within uhpC at 1151.201 kb on + strand, within uhpC at 1151.201 kb on + strand, within uhpC at 1151.201 kb on + strand, within uhpC at 1151.201 kb on + strand, within uhpC at 1151.201 kb on + strand, within uhpC at 1151.201 kb on + strand, within uhpC at 1151.202 kb on - strand, within uhpC at 1151.202 kb on - strand, within uhpC at 1151.202 kb on - strand, within uhpC at 1151.202 kb on - strand, within uhpC at 1151.240 kb on + strand, within uhpC at 1151.240 kb on + strand, within uhpC at 1151.240 kb on + strand, within uhpC at 1151.240 kb on + strand, within uhpC at 1151.241 kb on - strand, within uhpC at 1151.241 kb on - strand, within uhpC at 1151.242 kb on + strand, within uhpC at 1151.242 kb on + strand, within uhpC at 1151.242 kb on + strand, within uhpC at 1151.243 kb on - strand, within uhpC at 1151.243 kb on - strand, within uhpC at 1151.357 kb on - strand, within uhpC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 1,147,976 - MCAODC_05685 0.84 +0.3 1,148,039 + MCAODC_05685 0.90 -0.2 1,148,040 - MCAODC_05685 0.90 -0.0 1,148,058 + -0.2 1,148,106 - +0.4 1,148,150 - +0.6 1,148,226 + -1.2 1,148,226 + +0.1 1,148,227 - +0.1 1,148,227 - +1.2 1,148,234 + +0.3 1,148,235 - -0.0 1,148,235 - -0.5 1,148,238 + -1.2 1,148,238 + +0.5 1,148,239 - -0.3 1,148,270 + -0.1 1,148,281 + -1.2 1,148,281 + -1.3 1,148,332 + +1.0 1,148,333 - +0.2 1,148,333 - -0.2 1,148,333 - -0.1 1,148,398 + uhpA_G97D MCAODC_05690 0.14 +0.8 1,148,398 + uhpA_G97D MCAODC_05690 0.14 +0.2 1,148,398 + uhpA_G97D MCAODC_05690 0.14 -0.1 1,148,399 - uhpA_G97D MCAODC_05690 0.15 +0.8 1,148,399 - uhpA_G97D MCAODC_05690 0.15 +0.9 1,148,399 - uhpA_G97D MCAODC_05690 0.15 +1.0 1,148,465 + uhpA_G97D MCAODC_05690 0.26 +0.0 1,148,465 + uhpA_G97D MCAODC_05690 0.26 +0.0 1,148,466 - uhpA_G97D MCAODC_05690 0.26 +0.0 1,148,490 - uhpA_G97D MCAODC_05690 0.30 -1.1 1,148,510 - uhpA_G97D MCAODC_05690 0.33 +0.2 1,148,528 + uhpA_G97D MCAODC_05690 0.36 -0.2 1,148,528 + uhpA_G97D MCAODC_05690 0.36 +0.7 1,148,529 - uhpA_G97D MCAODC_05690 0.37 -0.2 1,148,529 - uhpA_G97D MCAODC_05690 0.37 +0.4 1,148,540 + uhpA_G97D MCAODC_05690 0.38 +1.0 1,148,540 + uhpA_G97D MCAODC_05690 0.38 -0.2 1,148,540 + uhpA_G97D MCAODC_05690 0.38 -0.1 1,148,540 + uhpA_G97D MCAODC_05690 0.38 -0.4 1,148,541 - uhpA_G97D MCAODC_05690 0.39 +1.3 1,148,541 - uhpA_G97D MCAODC_05690 0.39 -0.6 1,148,541 - uhpA_G97D MCAODC_05690 0.39 +1.3 1,148,541 - uhpA_G97D MCAODC_05690 0.39 +0.8 1,148,541 - uhpA_G97D MCAODC_05690 0.39 -0.9 1,148,541 - uhpA_G97D MCAODC_05690 0.39 +0.2 1,148,541 - uhpA_G97D MCAODC_05690 0.39 +1.4 1,148,621 + uhpA_G97D MCAODC_05690 0.52 +0.7 1,148,651 + uhpA_G97D MCAODC_05690 0.57 +0.6 1,148,652 - uhpA_G97D MCAODC_05690 0.57 -0.4 1,148,652 - uhpA_G97D MCAODC_05690 0.57 -0.8 1,148,652 - uhpA_G97D MCAODC_05690 0.57 +2.5 1,148,674 - uhpA_G97D MCAODC_05690 0.61 +0.6 1,148,818 + uhpA_G97D MCAODC_05690 0.85 +0.4 1,148,819 - uhpA_G97D MCAODC_05690 0.86 +0.5 1,148,819 - uhpA_G97D MCAODC_05690 0.86 +0.3 1,148,886 - -1.1 1,148,925 + +0.3 1,148,926 - +0.1 1,148,926 - +2.0 1,148,929 + +1.1 1,148,935 + +0.5 1,148,984 - +0.9 1,148,984 - +0.2 1,149,014 - +1.5 1,149,014 - +0.6 1,149,027 + +0.9 1,149,054 + uhpB MCAODC_05695 0.10 -0.1 1,149,116 + uhpB MCAODC_05695 0.14 +0.9 1,149,157 - uhpB MCAODC_05695 0.17 +0.5 1,149,170 - uhpB MCAODC_05695 0.18 +0.3 1,149,174 + uhpB MCAODC_05695 0.18 +1.9 1,149,174 + uhpB MCAODC_05695 0.18 -0.8 1,149,175 - uhpB MCAODC_05695 0.18 -1.0 1,149,184 - uhpB MCAODC_05695 0.19 +0.6 1,149,244 - uhpB MCAODC_05695 0.23 +0.4 1,149,363 + uhpB MCAODC_05695 0.31 -0.1 1,149,363 + uhpB MCAODC_05695 0.31 +0.1 1,149,364 - uhpB MCAODC_05695 0.31 -0.1 1,149,383 + uhpB MCAODC_05695 0.32 -0.2 1,149,383 + uhpB MCAODC_05695 0.32 +1.0 1,149,383 + uhpB MCAODC_05695 0.32 +0.7 1,149,395 - uhpB MCAODC_05695 0.33 -1.8 1,149,395 - uhpB MCAODC_05695 0.33 -1.0 1,149,395 - uhpB MCAODC_05695 0.33 -0.3 1,149,468 - uhpB MCAODC_05695 0.38 +1.2 1,149,468 - uhpB MCAODC_05695 0.38 +0.3 1,149,468 - uhpB MCAODC_05695 0.38 -0.2 1,149,484 + uhpB MCAODC_05695 0.39 +0.1 1,149,533 - uhpB MCAODC_05695 0.42 -1.0 1,149,667 - uhpB MCAODC_05695 0.51 +0.9 1,149,705 + uhpB MCAODC_05695 0.53 -1.2 1,149,705 + uhpB MCAODC_05695 0.53 +1.5 1,149,705 + uhpB MCAODC_05695 0.53 -0.3 1,149,739 + uhpB MCAODC_05695 0.56 +1.2 1,149,739 + uhpB MCAODC_05695 0.56 -0.7 1,149,740 - uhpB MCAODC_05695 0.56 +0.9 1,149,875 - uhpB MCAODC_05695 0.65 +0.3 1,149,875 - uhpB MCAODC_05695 0.65 +0.4 1,149,965 + uhpB MCAODC_05695 0.71 -0.7 1,149,966 - uhpB MCAODC_05695 0.71 +0.3 1,150,026 + uhpB MCAODC_05695 0.75 +0.8 1,150,398 - -0.4 1,150,398 - -0.0 1,150,398 - -2.7 1,150,490 + +2.2 1,150,529 + -3.6 1,150,541 + +0.0 1,150,542 - -0.9 1,150,552 + uhpC MCAODC_05700 0.10 +0.2 1,150,552 + uhpC MCAODC_05700 0.10 +1.2 1,150,637 + uhpC MCAODC_05700 0.17 -1.1 1,150,637 + uhpC MCAODC_05700 0.17 -0.4 1,150,637 + uhpC MCAODC_05700 0.17 +1.0 1,150,638 - uhpC MCAODC_05700 0.17 +1.1 1,150,638 - uhpC MCAODC_05700 0.17 +1.2 1,150,642 + uhpC MCAODC_05700 0.17 -2.0 1,150,643 - uhpC MCAODC_05700 0.17 +0.6 1,150,643 - uhpC MCAODC_05700 0.17 -2.9 1,150,643 - uhpC MCAODC_05700 0.17 +0.5 1,150,647 - uhpC MCAODC_05700 0.18 +0.0 1,150,700 + uhpC MCAODC_05700 0.22 +0.2 1,150,701 - uhpC MCAODC_05700 0.22 +0.1 1,150,705 + uhpC MCAODC_05700 0.22 +0.0 1,150,705 + uhpC MCAODC_05700 0.22 -0.7 1,150,713 + uhpC MCAODC_05700 0.23 +0.8 1,150,713 + uhpC MCAODC_05700 0.23 +0.1 1,150,853 + uhpC MCAODC_05700 0.33 -0.4 1,150,853 + uhpC MCAODC_05700 0.33 -0.2 1,150,903 + uhpC MCAODC_05700 0.37 +1.3 1,150,990 + uhpC MCAODC_05700 0.44 +0.5 1,150,991 - uhpC MCAODC_05700 0.44 +0.9 1,150,991 - uhpC MCAODC_05700 0.44 +0.1 1,150,991 - uhpC MCAODC_05700 0.44 -0.2 1,151,049 + uhpC MCAODC_05700 0.48 +0.1 1,151,147 + uhpC MCAODC_05700 0.55 +0.2 1,151,147 + uhpC MCAODC_05700 0.55 +0.6 1,151,147 + uhpC MCAODC_05700 0.55 +1.4 1,151,147 + uhpC MCAODC_05700 0.55 +1.0 1,151,147 + uhpC MCAODC_05700 0.55 +1.2 1,151,147 + uhpC MCAODC_05700 0.55 -0.5 1,151,148 - uhpC MCAODC_05700 0.56 +1.3 1,151,148 - uhpC MCAODC_05700 0.56 +0.5 1,151,148 - uhpC MCAODC_05700 0.56 +0.7 1,151,148 - uhpC MCAODC_05700 0.56 +0.9 1,151,148 - uhpC MCAODC_05700 0.56 +0.2 1,151,148 - uhpC MCAODC_05700 0.56 -0.3 1,151,148 - uhpC MCAODC_05700 0.56 +1.6 1,151,165 + uhpC MCAODC_05700 0.57 +0.6 1,151,165 + uhpC MCAODC_05700 0.57 -1.3 1,151,165 + uhpC MCAODC_05700 0.57 -0.5 1,151,166 - uhpC MCAODC_05700 0.57 +0.4 1,151,166 - uhpC MCAODC_05700 0.57 -0.4 1,151,166 - uhpC MCAODC_05700 0.57 -0.1 1,151,167 + uhpC MCAODC_05700 0.57 -0.1 1,151,167 + uhpC MCAODC_05700 0.57 +0.7 1,151,167 + uhpC MCAODC_05700 0.57 +0.5 1,151,168 - uhpC MCAODC_05700 0.57 +0.5 1,151,189 + uhpC MCAODC_05700 0.59 +0.1 1,151,189 + uhpC MCAODC_05700 0.59 -1.1 1,151,190 - uhpC MCAODC_05700 0.59 -0.6 1,151,190 - uhpC MCAODC_05700 0.59 +0.6 1,151,190 - uhpC MCAODC_05700 0.59 +0.4 1,151,201 + uhpC MCAODC_05700 0.60 +0.9 1,151,201 + uhpC MCAODC_05700 0.60 -0.0 1,151,201 + uhpC MCAODC_05700 0.60 +1.1 1,151,201 + uhpC MCAODC_05700 0.60 +0.1 1,151,201 + uhpC MCAODC_05700 0.60 +0.5 1,151,201 + uhpC MCAODC_05700 0.60 +0.3 1,151,202 - uhpC MCAODC_05700 0.60 +0.2 1,151,202 - uhpC MCAODC_05700 0.60 -0.3 1,151,202 - uhpC MCAODC_05700 0.60 -0.5 1,151,202 - uhpC MCAODC_05700 0.60 -1.1 1,151,240 + uhpC MCAODC_05700 0.62 -0.3 1,151,240 + uhpC MCAODC_05700 0.62 +0.2 1,151,240 + uhpC MCAODC_05700 0.62 +0.4 1,151,240 + uhpC MCAODC_05700 0.62 -1.5 1,151,241 - uhpC MCAODC_05700 0.63 +0.9 1,151,241 - uhpC MCAODC_05700 0.63 -1.0 1,151,242 + uhpC MCAODC_05700 0.63 -0.3 1,151,242 + uhpC MCAODC_05700 0.63 +0.4 1,151,242 + uhpC MCAODC_05700 0.63 -0.3 1,151,243 - uhpC MCAODC_05700 0.63 +0.7 1,151,243 - uhpC MCAODC_05700 0.63 +0.4 1,151,357 - uhpC MCAODC_05700 0.71 +0.1
Or see this region's nucleotide sequence