Strain Fitness in Escherichia coli ECRC101 around MCAODC_04870
Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | WM_Bas09 |
---|---|---|---|---|---|
remove | |||||
983,160 | + | recQ | MCAODC_04865 | 0.55 | -1.3 |
983,160 | + | recQ | MCAODC_04865 | 0.55 | -0.5 |
983,161 | - | recQ | MCAODC_04865 | 0.55 | +1.2 |
983,161 | - | recQ | MCAODC_04865 | 0.55 | -0.1 |
983,180 | + | recQ | MCAODC_04865 | 0.56 | -0.8 |
983,181 | - | recQ | MCAODC_04865 | 0.56 | +0.7 |
983,193 | + | recQ | MCAODC_04865 | 0.57 | +0.2 |
983,197 | - | recQ | MCAODC_04865 | 0.57 | +1.2 |
983,230 | + | recQ | MCAODC_04865 | 0.59 | +0.1 |
983,230 | + | recQ | MCAODC_04865 | 0.59 | -0.3 |
983,230 | + | recQ | MCAODC_04865 | 0.59 | -0.5 |
983,231 | - | recQ | MCAODC_04865 | 0.59 | -1.3 |
983,256 | + | recQ | MCAODC_04865 | 0.60 | -0.2 |
983,256 | + | recQ | MCAODC_04865 | 0.60 | +0.2 |
983,256 | + | recQ | MCAODC_04865 | 0.60 | -0.4 |
983,256 | + | recQ | MCAODC_04865 | 0.60 | +1.5 |
983,257 | - | recQ | MCAODC_04865 | 0.60 | -0.8 |
983,257 | - | recQ | MCAODC_04865 | 0.60 | -0.5 |
983,268 | + | recQ | MCAODC_04865 | 0.61 | -0.1 |
983,288 | + | recQ | MCAODC_04865 | 0.62 | +0.0 |
983,288 | + | recQ | MCAODC_04865 | 0.62 | -1.1 |
983,288 | + | recQ | MCAODC_04865 | 0.62 | -0.7 |
983,289 | - | recQ | MCAODC_04865 | 0.62 | -0.3 |
983,334 | - | recQ | MCAODC_04865 | 0.65 | +0.4 |
983,334 | - | recQ | MCAODC_04865 | 0.65 | -0.5 |
983,526 | + | recQ | MCAODC_04865 | 0.75 | +0.3 |
983,526 | + | recQ | MCAODC_04865 | 0.75 | -0.8 |
983,526 | + | recQ | MCAODC_04865 | 0.75 | -0.2 |
983,527 | - | recQ | MCAODC_04865 | 0.75 | +0.7 |
983,527 | - | recQ | MCAODC_04865 | 0.75 | +0.0 |
983,527 | - | recQ | MCAODC_04865 | 0.75 | -0.0 |
983,527 | - | recQ | MCAODC_04865 | 0.75 | -0.5 |
983,552 | - | recQ | MCAODC_04865 | 0.77 | +0.9 |
983,617 | - | recQ | MCAODC_04865 | 0.80 | +0.5 |
983,618 | + | recQ | MCAODC_04865 | 0.80 | +0.3 |
983,619 | - | recQ | MCAODC_04865 | 0.80 | +0.2 |
983,619 | - | recQ | MCAODC_04865 | 0.80 | +0.4 |
983,691 | + | recQ | MCAODC_04865 | 0.84 | -0.2 |
983,692 | - | recQ | MCAODC_04865 | 0.84 | -0.2 |
983,910 | - | +0.0 | |||
983,927 | - | +3.4 | |||
983,938 | - | -1.6 | |||
983,938 | - | +0.9 | |||
983,998 | + | +0.8 | |||
983,998 | + | +0.7 | |||
984,048 | - | -0.2 | |||
984,063 | - | +0.2 | |||
984,130 | - | +0.2 | |||
984,162 | + | +0.7 | |||
984,163 | - | +0.6 | |||
984,163 | - | +0.5 | |||
984,165 | - | +0.2 | |||
984,165 | - | -0.4 | |||
984,165 | - | +0.2 | |||
984,204 | + | pldA | MCAODC_04870 | 0.11 | +1.6 |
984,205 | - | pldA | MCAODC_04870 | 0.11 | +1.1 |
984,205 | - | pldA | MCAODC_04870 | 0.11 | +0.4 |
984,207 | - | pldA | MCAODC_04870 | 0.11 | +1.3 |
984,239 | - | pldA | MCAODC_04870 | 0.15 | +0.1 |
984,239 | - | pldA | MCAODC_04870 | 0.15 | -0.3 |
984,239 | - | pldA | MCAODC_04870 | 0.15 | +0.1 |
984,239 | - | pldA | MCAODC_04870 | 0.15 | +0.4 |
984,239 | - | pldA | MCAODC_04870 | 0.15 | -1.8 |
984,244 | + | pldA | MCAODC_04870 | 0.16 | +0.0 |
984,278 | + | pldA | MCAODC_04870 | 0.19 | +1.0 |
984,279 | - | pldA | MCAODC_04870 | 0.20 | -0.0 |
984,279 | - | pldA | MCAODC_04870 | 0.20 | -1.0 |
984,327 | + | pldA | MCAODC_04870 | 0.25 | -0.1 |
984,335 | + | pldA | MCAODC_04870 | 0.26 | +0.9 |
984,335 | + | pldA | MCAODC_04870 | 0.26 | -0.3 |
984,335 | + | pldA | MCAODC_04870 | 0.26 | -2.2 |
984,335 | + | pldA | MCAODC_04870 | 0.26 | -1.7 |
984,336 | - | pldA | MCAODC_04870 | 0.26 | -0.7 |
984,336 | - | pldA | MCAODC_04870 | 0.26 | +1.3 |
984,338 | + | pldA | MCAODC_04870 | 0.26 | +0.1 |
984,338 | + | pldA | MCAODC_04870 | 0.26 | -0.2 |
984,339 | - | pldA | MCAODC_04870 | 0.26 | +1.6 |
984,339 | - | pldA | MCAODC_04870 | 0.26 | +0.2 |
984,345 | + | pldA | MCAODC_04870 | 0.27 | -0.5 |
984,345 | + | pldA | MCAODC_04870 | 0.27 | -1.0 |
984,345 | + | pldA | MCAODC_04870 | 0.27 | -0.1 |
984,345 | + | pldA | MCAODC_04870 | 0.27 | -0.1 |
984,345 | + | pldA | MCAODC_04870 | 0.27 | +0.4 |
984,346 | - | pldA | MCAODC_04870 | 0.27 | -0.2 |
984,347 | + | pldA | MCAODC_04870 | 0.27 | +0.3 |
984,347 | + | pldA | MCAODC_04870 | 0.27 | -0.1 |
984,347 | + | pldA | MCAODC_04870 | 0.27 | -0.4 |
984,347 | + | pldA | MCAODC_04870 | 0.27 | -0.4 |
984,347 | + | pldA | MCAODC_04870 | 0.27 | -0.1 |
984,347 | + | pldA | MCAODC_04870 | 0.27 | +2.0 |
984,348 | - | pldA | MCAODC_04870 | 0.27 | +0.4 |
984,348 | - | pldA | MCAODC_04870 | 0.27 | -0.2 |
984,348 | - | pldA | MCAODC_04870 | 0.27 | -0.2 |
984,348 | - | pldA | MCAODC_04870 | 0.27 | +0.9 |
984,348 | - | pldA | MCAODC_04870 | 0.27 | +1.1 |
984,348 | - | pldA | MCAODC_04870 | 0.27 | +0.1 |
984,348 | - | pldA | MCAODC_04870 | 0.27 | +1.2 |
984,348 | - | pldA | MCAODC_04870 | 0.27 | -0.1 |
984,348 | - | pldA | MCAODC_04870 | 0.27 | -2.2 |
984,375 | + | pldA | MCAODC_04870 | 0.31 | +0.5 |
984,375 | + | pldA | MCAODC_04870 | 0.31 | -0.1 |
984,376 | - | pldA | MCAODC_04870 | 0.31 | +0.5 |
984,376 | - | pldA | MCAODC_04870 | 0.31 | +1.1 |
984,379 | - | pldA | MCAODC_04870 | 0.31 | -1.5 |
984,389 | + | pldA | MCAODC_04870 | 0.32 | -0.0 |
984,389 | + | pldA | MCAODC_04870 | 0.32 | -0.0 |
984,389 | + | pldA | MCAODC_04870 | 0.32 | +0.3 |
984,389 | + | pldA | MCAODC_04870 | 0.32 | -0.5 |
984,389 | + | pldA | MCAODC_04870 | 0.32 | -0.9 |
984,390 | - | pldA | MCAODC_04870 | 0.32 | -2.2 |
984,390 | - | pldA | MCAODC_04870 | 0.32 | +0.2 |
984,390 | - | pldA | MCAODC_04870 | 0.32 | -0.4 |
984,390 | - | pldA | MCAODC_04870 | 0.32 | +1.9 |
984,390 | - | pldA | MCAODC_04870 | 0.32 | -0.7 |
984,390 | - | pldA | MCAODC_04870 | 0.32 | -1.1 |
984,390 | - | pldA | MCAODC_04870 | 0.32 | +0.1 |
984,406 | + | pldA | MCAODC_04870 | 0.34 | -1.9 |
984,407 | - | pldA | MCAODC_04870 | 0.34 | +0.5 |
984,407 | - | pldA | MCAODC_04870 | 0.34 | +0.9 |
984,417 | + | pldA | MCAODC_04870 | 0.35 | +0.3 |
984,443 | + | pldA | MCAODC_04870 | 0.38 | -0.2 |
984,443 | + | pldA | MCAODC_04870 | 0.38 | +0.6 |
984,443 | + | pldA | MCAODC_04870 | 0.38 | -1.2 |
984,444 | - | pldA | MCAODC_04870 | 0.39 | -0.9 |
984,498 | + | pldA | MCAODC_04870 | 0.45 | +0.3 |
984,498 | + | pldA | MCAODC_04870 | 0.45 | +1.0 |
984,498 | + | pldA | MCAODC_04870 | 0.45 | -0.3 |
984,500 | + | pldA | MCAODC_04870 | 0.45 | -0.2 |
984,501 | - | pldA | MCAODC_04870 | 0.45 | +1.4 |
984,501 | - | pldA | MCAODC_04870 | 0.45 | +0.4 |
984,501 | - | pldA | MCAODC_04870 | 0.45 | -0.0 |
984,501 | - | pldA | MCAODC_04870 | 0.45 | +0.2 |
984,578 | + | pldA | MCAODC_04870 | 0.54 | -0.1 |
984,578 | + | pldA | MCAODC_04870 | 0.54 | +0.1 |
984,579 | - | pldA | MCAODC_04870 | 0.54 | +0.2 |
984,579 | - | pldA | MCAODC_04870 | 0.54 | -0.6 |
984,579 | - | pldA | MCAODC_04870 | 0.54 | +0.9 |
984,612 | + | pldA | MCAODC_04870 | 0.58 | -0.3 |
984,642 | + | pldA | MCAODC_04870 | 0.61 | +0.7 |
984,642 | + | pldA | MCAODC_04870 | 0.61 | -2.1 |
984,642 | + | pldA | MCAODC_04870 | 0.61 | +0.6 |
984,642 | + | pldA | MCAODC_04870 | 0.61 | +0.5 |
984,643 | - | pldA | MCAODC_04870 | 0.61 | +0.3 |
984,643 | - | pldA | MCAODC_04870 | 0.61 | +0.0 |
984,644 | + | pldA | MCAODC_04870 | 0.61 | -0.5 |
984,644 | + | pldA | MCAODC_04870 | 0.61 | -0.3 |
984,645 | - | pldA | MCAODC_04870 | 0.62 | -0.6 |
984,645 | - | pldA | MCAODC_04870 | 0.62 | +0.6 |
984,645 | - | pldA | MCAODC_04870 | 0.62 | -0.7 |
984,645 | - | pldA | MCAODC_04870 | 0.62 | +0.5 |
984,645 | - | pldA | MCAODC_04870 | 0.62 | +0.7 |
984,645 | - | pldA | MCAODC_04870 | 0.62 | +1.0 |
984,718 | + | pldA | MCAODC_04870 | 0.70 | -1.0 |
984,718 | + | pldA | MCAODC_04870 | 0.70 | -0.1 |
984,719 | - | pldA | MCAODC_04870 | 0.70 | -0.5 |
984,719 | - | pldA | MCAODC_04870 | 0.70 | -1.0 |
984,730 | - | pldA | MCAODC_04870 | 0.71 | -0.5 |
984,753 | - | pldA | MCAODC_04870 | 0.74 | +0.3 |
984,794 | + | pldA | MCAODC_04870 | 0.79 | +0.4 |
984,794 | + | pldA | MCAODC_04870 | 0.79 | +0.8 |
984,795 | - | pldA | MCAODC_04870 | 0.79 | +0.2 |
984,795 | - | pldA | MCAODC_04870 | 0.79 | +0.4 |
984,795 | - | pldA | MCAODC_04870 | 0.79 | -0.6 |
984,803 | + | pldA | MCAODC_04870 | 0.80 | +0.9 |
984,803 | + | pldA | MCAODC_04870 | 0.80 | +0.0 |
984,803 | + | pldA | MCAODC_04870 | 0.80 | +0.1 |
984,803 | + | pldA | MCAODC_04870 | 0.80 | +0.2 |
984,803 | + | pldA | MCAODC_04870 | 0.80 | +0.5 |
984,803 | + | pldA | MCAODC_04870 | 0.80 | -0.5 |
984,803 | + | pldA | MCAODC_04870 | 0.80 | +0.4 |
984,804 | - | pldA | MCAODC_04870 | 0.80 | -1.8 |
984,804 | - | pldA | MCAODC_04870 | 0.80 | -1.5 |
984,804 | - | pldA | MCAODC_04870 | 0.80 | -3.0 |
984,815 | + | pldA | MCAODC_04870 | 0.81 | +0.8 |
984,815 | + | pldA | MCAODC_04870 | 0.81 | +1.8 |
984,815 | + | pldA | MCAODC_04870 | 0.81 | +0.6 |
984,815 | + | pldA | MCAODC_04870 | 0.81 | +1.3 |
984,816 | - | pldA | MCAODC_04870 | 0.81 | +1.3 |
984,822 | - | pldA | MCAODC_04870 | 0.82 | -0.2 |
984,822 | - | pldA | MCAODC_04870 | 0.82 | +0.0 |
984,856 | - | pldA | MCAODC_04870 | 0.86 | -0.4 |
984,864 | + | pldA | MCAODC_04870 | 0.87 | +0.2 |
984,868 | - | pldA | MCAODC_04870 | 0.87 | +1.5 |
984,868 | - | pldA | MCAODC_04870 | 0.87 | -0.2 |
984,923 | + | +0.4 | |||
984,923 | + | +0.3 | |||
984,923 | + | +0.4 | |||
984,923 | + | -0.5 | |||
984,923 | + | +0.8 | |||
984,923 | + | -0.2 | |||
984,923 | + | +0.9 | |||
984,923 | + | +0.9 | |||
984,923 | + | +0.5 | |||
984,924 | - | +0.7 | |||
984,924 | - | -0.1 | |||
984,924 | - | +1.1 | |||
984,924 | - | +0.4 | |||
984,924 | - | +0.3 | |||
984,924 | - | +0.7 | |||
984,924 | - | -1.6 | |||
984,925 | + | +0.4 | |||
984,925 | + | +1.0 | |||
984,925 | + | -0.2 | |||
984,926 | - | +0.8 | |||
984,926 | - | -0.2 | |||
984,926 | - | +1.5 | |||
984,926 | - | +0.1 | |||
984,926 | - | -2.3 | |||
984,926 | - | -1.6 | |||
984,926 | - | -1.1 | |||
984,926 | - | -0.3 | |||
984,942 | + | -0.5 | |||
984,942 | + | -2.2 | |||
984,942 | + | +0.6 | |||
984,942 | + | +0.5 | |||
984,942 | + | -0.1 | |||
984,943 | - | -1.7 | |||
984,943 | - | +0.7 | |||
984,943 | - | +0.8 | |||
984,943 | - | +0.1 | |||
984,943 | - | +0.5 | |||
985,003 | - | +0.3 | |||
985,008 | + | +1.1 | |||
985,009 | - | +0.6 | |||
985,033 | - | -0.2 | |||
985,037 | + | -1.7 | |||
985,037 | + | -0.3 | |||
985,037 | + | +0.5 | |||
985,037 | + | -1.0 | |||
985,038 | - | -0.5 | |||
985,038 | - | +0.4 | |||
985,038 | - | +0.6 | |||
985,038 | - | -0.1 | |||
985,038 | - | -0.9 | |||
985,041 | + | -0.2 | |||
985,041 | + | +0.3 | |||
985,041 | + | +2.0 | |||
985,041 | + | +0.3 | |||
985,042 | - | +1.6 | |||
985,042 | - | -0.2 | |||
985,042 | - | -1.1 | |||
985,042 | - | +1.1 | |||
985,045 | + | +0.5 | |||
985,045 | + | +1.3 | |||
985,045 | + | +0.5 | |||
985,046 | - | +0.0 | |||
985,046 | - | -0.4 | |||
985,046 | - | +0.0 | |||
985,060 | + | -1.0 | |||
985,064 | + | -2.1 | |||
985,079 | + | +0.3 | |||
985,133 | + | -0.6 | |||
985,134 | - | +0.5 | |||
985,134 | - | +0.6 | |||
985,134 | - | +0.7 | |||
985,134 | - | -0.2 | |||
985,134 | - | -0.1 | |||
985,142 | + | -0.6 | |||
985,143 | - | -0.3 | |||
985,143 | - | -2.9 | |||
985,180 | + | +0.2 | |||
985,201 | - | yigI | MCAODC_04875 | 0.12 | +0.9 |
985,201 | - | yigI | MCAODC_04875 | 0.12 | -0.1 |
985,215 | - | yigI | MCAODC_04875 | 0.15 | +0.3 |
985,245 | + | yigI | MCAODC_04875 | 0.22 | +1.0 |
985,372 | + | yigI | MCAODC_04875 | 0.49 | -0.2 |
985,379 | + | yigI | MCAODC_04875 | 0.50 | -0.1 |
985,380 | - | yigI | MCAODC_04875 | 0.51 | -2.1 |
985,380 | - | yigI | MCAODC_04875 | 0.51 | -0.6 |
985,380 | - | yigI | MCAODC_04875 | 0.51 | +0.7 |
985,417 | + | yigI | MCAODC_04875 | 0.59 | -0.6 |
985,418 | - | yigI | MCAODC_04875 | 0.59 | -0.3 |
985,464 | + | yigI | MCAODC_04875 | 0.69 | -0.5 |
985,493 | + | yigI | MCAODC_04875 | 0.75 | +0.6 |
985,493 | + | yigI | MCAODC_04875 | 0.75 | -2.5 |
985,493 | + | yigI | MCAODC_04875 | 0.75 | +0.9 |
985,494 | - | yigI | MCAODC_04875 | 0.75 | -0.4 |
985,499 | + | yigI | MCAODC_04875 | 0.76 | -0.9 |
985,552 | + | yigI | MCAODC_04875 | 0.87 | -1.2 |
985,553 | - | yigI | MCAODC_04875 | 0.88 | +0.2 |
985,572 | + | -0.0 | |||
985,572 | + | +0.0 | |||
985,572 | + | +0.3 | |||
985,572 | + | +0.2 | |||
985,572 | + | +0.5 | |||
985,572 | + | +0.5 | |||
985,572 | + | -0.6 | |||
985,573 | - | -0.5 | |||
985,574 | + | -0.5 | |||
985,575 | - | +0.0 | |||
985,575 | - | -0.1 | |||
985,596 | + | -0.4 | |||
985,596 | + | +0.6 | |||
985,596 | + | +0.2 | |||
985,596 | + | +0.4 | |||
985,596 | + | +0.4 | |||
985,596 | + | +0.9 | |||
985,596 | + | +0.5 | |||
985,596 | + | -0.2 | |||
985,596 | + | -1.0 | |||
985,597 | - | +1.5 | |||
985,597 | - | +0.6 | |||
985,597 | - | +0.4 | |||
985,597 | - | -1.0 | |||
985,597 | - | -0.2 | |||
985,597 | - | -1.3 | |||
985,597 | - | +0.7 | |||
985,597 | - | +0.9 | |||
985,597 | - | -0.1 | |||
985,598 | + | -1.8 | |||
985,599 | - | +0.1 | |||
985,603 | + | +0.3 | |||
985,603 | + | +0.8 | |||
985,604 | - | -0.5 | |||
985,616 | + | +2.4 | |||
985,616 | + | +0.3 | |||
985,617 | - | +0.4 | |||
985,617 | - | -0.6 | |||
985,690 | + | +0.4 | |||
985,691 | - | -1.6 | |||
985,691 | - | +1.0 | |||
985,694 | - | +0.4 | |||
985,715 | + | +1.0 | |||
985,715 | + | +0.7 | |||
985,716 | - | -0.3 | |||
985,726 | + | +1.6 | |||
985,726 | + | -0.1 | |||
985,726 | + | +0.2 | |||
985,737 | + | -0.2 | |||
985,737 | + | -0.8 | |||
985,737 | + | -0.4 | |||
985,738 | - | -0.9 | |||
985,738 | - | +0.7 | |||
985,738 | - | -0.3 | |||
985,738 | - | +0.2 | |||
985,752 | + | rarD | MCAODC_04880 | 0.10 | -0.1 |
985,752 | + | rarD | MCAODC_04880 | 0.10 | -0.3 |
985,755 | + | rarD | MCAODC_04880 | 0.10 | -1.0 |
985,755 | + | rarD | MCAODC_04880 | 0.10 | +0.0 |
985,755 | + | rarD | MCAODC_04880 | 0.10 | +0.6 |
985,755 | + | rarD | MCAODC_04880 | 0.10 | +0.1 |
985,755 | + | rarD | MCAODC_04880 | 0.10 | +0.9 |
985,809 | - | rarD | MCAODC_04880 | 0.17 | +0.2 |
985,849 | + | rarD | MCAODC_04880 | 0.21 | +0.2 |
985,850 | - | rarD | MCAODC_04880 | 0.21 | +0.5 |
985,931 | + | rarD | MCAODC_04880 | 0.30 | -0.0 |
985,932 | - | rarD | MCAODC_04880 | 0.30 | +0.2 |
985,955 | + | rarD | MCAODC_04880 | 0.33 | +0.2 |
985,955 | + | rarD | MCAODC_04880 | 0.33 | -0.1 |
985,956 | - | rarD | MCAODC_04880 | 0.33 | -0.6 |
985,977 | + | rarD | MCAODC_04880 | 0.35 | -1.9 |
985,977 | + | rarD | MCAODC_04880 | 0.35 | +0.9 |
Or see this region's nucleotide sequence