Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjaG and nfi are separated by 42 nucleotides nfi and hemE are separated by 9 nucleotides hemE and nudC are separated by 39 nucleotides nudC and rsd are separated by 94 nucleotides
MCAODC_03850: yjaG - Uncharacterized protein YjaG, at 777,233 to 777,823
yjaG
MCAODC_03855: nfi - deoxyribonuclease V, at 777,866 to 778,537
nfi
MCAODC_03860: hemE - uroporphyrinogen decarboxylase, at 778,547 to 779,611
hemE
MCAODC_03865: nudC - NAD(+) diphosphatase, at 779,651 to 780,424
nudC
MCAODC_03870: rsd - sigma D regulator, at 780,519 to 780,995
rsd
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 777.561 kb on + strand, within yjaG at 777.726 kb on + strand, within yjaG at 777.727 kb on - strand, within yjaG at 777.735 kb on + strand, within yjaG at 777.750 kb on - strand, within yjaG at 777.750 kb on - strand, within yjaG at 777.819 kb on - strand at 777.884 kb on - strand at 777.885 kb on + strand at 777.885 kb on + strand at 777.886 kb on - strand at 777.971 kb on + strand, within nfi at 777.971 kb on + strand, within nfi at 778.012 kb on + strand, within nfi at 778.018 kb on + strand, within nfi at 778.018 kb on + strand, within nfi at 778.018 kb on + strand, within nfi at 778.019 kb on - strand, within nfi at 778.022 kb on + strand, within nfi at 778.023 kb on - strand, within nfi at 778.075 kb on + strand, within nfi at 778.127 kb on - strand, within nfi at 778.133 kb on + strand, within nfi at 778.133 kb on + strand, within nfi at 778.134 kb on - strand, within nfi at 778.134 kb on - strand, within nfi at 778.241 kb on + strand, within nfi at 778.242 kb on - strand, within nfi at 778.242 kb on - strand, within nfi at 778.291 kb on - strand, within nfi at 778.320 kb on + strand, within nfi at 778.320 kb on + strand, within nfi at 778.320 kb on + strand, within nfi at 778.320 kb on + strand, within nfi at 778.320 kb on + strand, within nfi at 778.320 kb on + strand, within nfi at 778.321 kb on - strand, within nfi at 778.321 kb on - strand, within nfi at 778.321 kb on - strand, within nfi at 778.321 kb on - strand, within nfi at 778.351 kb on + strand, within nfi at 778.353 kb on + strand, within nfi at 778.520 kb on + strand at 778.521 kb on - strand at 778.558 kb on - strand at 778.558 kb on - strand at 779.626 kb on - strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.647 kb on - strand at 779.647 kb on - strand at 779.647 kb on - strand at 779.658 kb on + strand at 779.658 kb on + strand at 779.658 kb on + strand at 779.659 kb on - strand at 779.684 kb on - strand at 779.691 kb on - strand at 779.691 kb on - strand at 779.691 kb on - strand at 779.802 kb on + strand, within nudC at 779.802 kb on + strand, within nudC at 779.803 kb on - strand, within nudC at 779.803 kb on - strand, within nudC at 779.825 kb on + strand, within nudC at 779.862 kb on + strand, within nudC at 779.876 kb on - strand, within nudC at 779.958 kb on - strand, within nudC at 779.962 kb on + strand, within nudC at 779.962 kb on + strand, within nudC at 779.963 kb on - strand, within nudC at 780.032 kb on - strand, within nudC at 780.054 kb on + strand, within nudC at 780.054 kb on + strand, within nudC at 780.109 kb on - strand, within nudC at 780.135 kb on + strand, within nudC at 780.135 kb on + strand, within nudC at 780.135 kb on + strand, within nudC at 780.135 kb on + strand, within nudC at 780.136 kb on - strand, within nudC at 780.136 kb on - strand, within nudC at 780.139 kb on + strand, within nudC at 780.168 kb on - strand, within nudC at 780.168 kb on - strand, within nudC at 780.168 kb on - strand, within nudC at 780.221 kb on + strand, within nudC at 780.222 kb on - strand, within nudC at 780.232 kb on + strand, within nudC at 780.233 kb on - strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.255 kb on - strand, within nudC at 780.255 kb on - strand, within nudC at 780.255 kb on - strand, within nudC at 780.293 kb on + strand, within nudC at 780.293 kb on + strand, within nudC at 780.293 kb on + strand, within nudC at 780.363 kb on - strand at 780.413 kb on + strand at 780.414 kb on - strand at 780.424 kb on + strand at 780.424 kb on + strand at 780.424 kb on + strand at 780.425 kb on - strand at 780.425 kb on - strand at 780.425 kb on - strand at 780.436 kb on + strand at 780.437 kb on - strand at 780.498 kb on + strand at 780.499 kb on - strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.536 kb on + strand at 780.563 kb on + strand at 780.586 kb on + strand, within rsd at 780.586 kb on + strand, within rsd at 780.586 kb on + strand, within rsd at 780.586 kb on + strand, within rsd at 780.587 kb on - strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.597 kb on - strand, within rsd at 780.597 kb on - strand, within rsd at 780.597 kb on - strand, within rsd
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 777,561 + yjaG MCAODC_03850 0.55 +0.5 777,726 + yjaG MCAODC_03850 0.83 +1.3 777,727 - yjaG MCAODC_03850 0.84 +0.4 777,735 + yjaG MCAODC_03850 0.85 +1.1 777,750 - yjaG MCAODC_03850 0.87 -2.1 777,750 - yjaG MCAODC_03850 0.87 +0.5 777,819 - -3.1 777,884 - -1.0 777,885 + +0.1 777,885 + -0.4 777,886 - +0.6 777,971 + nfi MCAODC_03855 0.16 +0.9 777,971 + nfi MCAODC_03855 0.16 +0.1 778,012 + nfi MCAODC_03855 0.22 -0.1 778,018 + nfi MCAODC_03855 0.23 +0.4 778,018 + nfi MCAODC_03855 0.23 +0.7 778,018 + nfi MCAODC_03855 0.23 +0.8 778,019 - nfi MCAODC_03855 0.23 +0.9 778,022 + nfi MCAODC_03855 0.23 +1.1 778,023 - nfi MCAODC_03855 0.23 +0.9 778,075 + nfi MCAODC_03855 0.31 -0.6 778,127 - nfi MCAODC_03855 0.39 +0.2 778,133 + nfi MCAODC_03855 0.40 +0.2 778,133 + nfi MCAODC_03855 0.40 -2.5 778,134 - nfi MCAODC_03855 0.40 +0.3 778,134 - nfi MCAODC_03855 0.40 +1.0 778,241 + nfi MCAODC_03855 0.56 +0.0 778,242 - nfi MCAODC_03855 0.56 -0.6 778,242 - nfi MCAODC_03855 0.56 +0.1 778,291 - nfi MCAODC_03855 0.63 -0.2 778,320 + nfi MCAODC_03855 0.68 +0.8 778,320 + nfi MCAODC_03855 0.68 +0.5 778,320 + nfi MCAODC_03855 0.68 -0.2 778,320 + nfi MCAODC_03855 0.68 -0.4 778,320 + nfi MCAODC_03855 0.68 -2.4 778,320 + nfi MCAODC_03855 0.68 -0.2 778,321 - nfi MCAODC_03855 0.68 +0.4 778,321 - nfi MCAODC_03855 0.68 +0.0 778,321 - nfi MCAODC_03855 0.68 -0.1 778,321 - nfi MCAODC_03855 0.68 +0.9 778,351 + nfi MCAODC_03855 0.72 -0.7 778,353 + nfi MCAODC_03855 0.72 +0.3 778,520 + -0.7 778,521 - +1.4 778,558 - +0.8 778,558 - +0.3 779,626 - +0.1 779,646 + +1.7 779,646 + -0.3 779,646 + -0.7 779,646 + -0.5 779,646 + +0.4 779,646 + -1.4 779,647 - +0.0 779,647 - -1.5 779,647 - +1.0 779,658 + +1.5 779,658 + -0.2 779,658 + -0.3 779,659 - +1.9 779,684 - -0.3 779,691 - -2.1 779,691 - +1.0 779,691 - +1.7 779,802 + nudC MCAODC_03865 0.20 +0.8 779,802 + nudC MCAODC_03865 0.20 -0.7 779,803 - nudC MCAODC_03865 0.20 +1.0 779,803 - nudC MCAODC_03865 0.20 +0.6 779,825 + nudC MCAODC_03865 0.22 +0.5 779,862 + nudC MCAODC_03865 0.27 +0.2 779,876 - nudC MCAODC_03865 0.29 +0.9 779,958 - nudC MCAODC_03865 0.40 +0.4 779,962 + nudC MCAODC_03865 0.40 -1.3 779,962 + nudC MCAODC_03865 0.40 -0.9 779,963 - nudC MCAODC_03865 0.40 +0.1 780,032 - nudC MCAODC_03865 0.49 -1.0 780,054 + nudC MCAODC_03865 0.52 -0.1 780,054 + nudC MCAODC_03865 0.52 +1.8 780,109 - nudC MCAODC_03865 0.59 +0.2 780,135 + nudC MCAODC_03865 0.63 -0.9 780,135 + nudC MCAODC_03865 0.63 +0.4 780,135 + nudC MCAODC_03865 0.63 -1.2 780,135 + nudC MCAODC_03865 0.63 -0.5 780,136 - nudC MCAODC_03865 0.63 +0.6 780,136 - nudC MCAODC_03865 0.63 -0.9 780,139 + nudC MCAODC_03865 0.63 -0.0 780,168 - nudC MCAODC_03865 0.67 +0.4 780,168 - nudC MCAODC_03865 0.67 -0.3 780,168 - nudC MCAODC_03865 0.67 -1.4 780,221 + nudC MCAODC_03865 0.74 -1.3 780,222 - nudC MCAODC_03865 0.74 +0.4 780,232 + nudC MCAODC_03865 0.75 -0.2 780,233 - nudC MCAODC_03865 0.75 -0.7 780,254 + nudC MCAODC_03865 0.78 +0.3 780,254 + nudC MCAODC_03865 0.78 +0.1 780,254 + nudC MCAODC_03865 0.78 -0.2 780,254 + nudC MCAODC_03865 0.78 -0.0 780,254 + nudC MCAODC_03865 0.78 -1.2 780,254 + nudC MCAODC_03865 0.78 +0.0 780,255 - nudC MCAODC_03865 0.78 +1.1 780,255 - nudC MCAODC_03865 0.78 +0.6 780,255 - nudC MCAODC_03865 0.78 +0.3 780,293 + nudC MCAODC_03865 0.83 +0.2 780,293 + nudC MCAODC_03865 0.83 +1.8 780,293 + nudC MCAODC_03865 0.83 +0.7 780,363 - +0.1 780,413 + -0.6 780,414 - -1.6 780,424 + +0.5 780,424 + +0.7 780,424 + -0.1 780,425 - -0.0 780,425 - -1.6 780,425 - +1.2 780,436 + +0.5 780,437 - +0.6 780,498 + +1.4 780,499 - -0.1 780,524 + +0.2 780,524 + -1.1 780,536 + -1.0 780,563 + +0.4 780,586 + rsd MCAODC_03870 0.14 -0.8 780,586 + rsd MCAODC_03870 0.14 -0.2 780,586 + rsd MCAODC_03870 0.14 +0.3 780,586 + rsd MCAODC_03870 0.14 -0.2 780,587 - rsd MCAODC_03870 0.14 +0.6 780,592 + rsd MCAODC_03870 0.15 -0.0 780,592 + rsd MCAODC_03870 0.15 +0.3 780,592 + rsd MCAODC_03870 0.15 +0.7 780,592 + rsd MCAODC_03870 0.15 -0.1 780,592 + rsd MCAODC_03870 0.15 +0.2 780,592 + rsd MCAODC_03870 0.15 +0.8 780,593 - rsd MCAODC_03870 0.16 -1.1 780,593 - rsd MCAODC_03870 0.16 -0.1 780,593 - rsd MCAODC_03870 0.16 +0.5 780,593 - rsd MCAODC_03870 0.16 -0.8 780,593 - rsd MCAODC_03870 0.16 +0.0 780,593 - rsd MCAODC_03870 0.16 +0.8 780,593 - rsd MCAODC_03870 0.16 -0.6 780,593 - rsd MCAODC_03870 0.16 +0.9 780,593 - rsd MCAODC_03870 0.16 +0.6 780,593 - rsd MCAODC_03870 0.16 -0.8 780,596 + rsd MCAODC_03870 0.16 +0.1 780,596 + rsd MCAODC_03870 0.16 +0.4 780,596 + rsd MCAODC_03870 0.16 +0.1 780,596 + rsd MCAODC_03870 0.16 +0.6 780,596 + rsd MCAODC_03870 0.16 -0.2 780,596 + rsd MCAODC_03870 0.16 -1.1 780,596 + rsd MCAODC_03870 0.16 -0.8 780,597 - rsd MCAODC_03870 0.16 +0.9 780,597 - rsd MCAODC_03870 0.16 +0.2 780,597 - rsd MCAODC_03870 0.16 +1.1
Or see this region's nucleotide sequence